BAC Information

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BAC

Clone NameB6Ng01-043H11
Chromosome9 (Build37)
Map Location 78,207,632 - 78,353,659
singlet/doubletdoublet
Overlap geneDppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1
Upstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2
Downstream geneSlc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043H11.bB6Ng01-043H11.g
ACCDH869520DH869521
length7931,026
definitionDH869520|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H11, 5' end.DH869521|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,352,893 - 78,353,659)(78,207,632 - 78,208,649)
sequence
gaattcatcttctacaaacccatttagcaatattatagtcactttcccat
ttaactactcatcccatggcctcagaactacattcagtctgtccccaacc
tctgctgacttcgttttttaaatatattttattaattatttttgaaattt
tcatacactgatttttttttttttatgtaagtacactgtagctgtcttca
gacactccagaagagggcatcagatttcattacggatggttgtgagccac
cacgtggtggctgggatttgaactcgggaccttcggaagagcagtcggtg
ctcttaagcactgagccatctcgccagccccaaatactgcatcttgatca
ttgtttcaggaaagatcacatttacctcccactccccacctaactcctcc
cagacccacccagaccttcttactcctccacctaactcctcccagatcca
ccccacctccctacttctccacctaactcctctcagatccaccccacctc
cctactcctccacctaactcctcccagatccaccccacctccctttcttt
catttttatcattttttaagatttattgacttttatgtgtgtaggtatta
tgcacaagtgtctgtgcatcccttttgagctcggcggagtcagaagaagg
cttcagattccctggaacaagaagagttctagaaagactgttagctgcca
tgtgggtactaggaattaagtcgaatcctctggaagagcagctagtgctc
ttaacttgctgagccgggtttttttgtttttgttttttgtttt
gaattcacagtattttcctgaatttccctttttctgggagcgattgcaca
cactctcatgggcaaggtcaatctttgctgttgtaggaagtgtggtgtgc
attggggggtgggctttgagcaaatacagagcattcaccctcccaaggtc
agattttgaatactggcttctcagttcagtattggacatcaagcatcagt
taacattaccatagacaacctttcattgctgactgcttttctccaggatt
cacgagcattcactgaatgctgcacctacgggctcaggaaaaaaaaaaaa
aaagtttgcctgggtgggggcgttgagaaactgttaatctctctgcattt
ctcctgggagtgaaattggtgccaccttgcctgaaggaaagtggttacag
ttggcaaaagtaagagcaagtgaggtttgtttatctgggctttgggagtg
gtgctggagacttaagccagggccctgagcatcccagacaggtggttcac
ttacccaccaatcccaggagcttcctgcttttagaacagcagttttcccc
ctagaaatttagcctacagacatgaaaacaaaacaacagtactcaatgaa
ttccacacacctgtaaagacaaaaggtccgaatacccaatggcccttcaa
aaagagctaattaaatggaatatctgacatggggaaagaggaacatatta
tacatttataactggaactctgttataactgaaactctggctggttggtg
ggtcatgcctataatcccaacaacctggagactaaggagagagggttgcc
acaagtttcaaggccagactggtctacataacaatgagaccctgtctcaa
aaaccaaaacagggtcagcaagatggctcagcttgcagccaggccttgac
gtcctgaatcttagccccttgaacccttcaaatgaaaggagaggtccaac
tcccagcaagatattcctctgatccctaccttcttcagagagggagaggt
ggtatactgagaggggggatggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78352893_78353659
seq2: B6Ng01-043H11.b_44_812 (reverse)

seq1  ACCCGGCTCAGC-AGTTAAGAGCACTGGCTGCTCTTCCAGAGGATTCGAC  49
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  ACCCGGCTCAGCAAGTTAAGAGCACTAGCTGCTCTTCCAGAGGATTCGAC  50

seq1  TTAATTCCTAGTACCCACATGGCAGCTAACAGTC-TTCTAGAACTCTTCT  98
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAATTCCTAGTACCCACATGGCAGCTAACAGTCTTTCTAGAACTCTTCT  100

seq1  TGTTCCAGGGAATCTGAAGCCTTCTTCTGGCTCCGCCGAGCTCAAAAGGG  148
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGTTCCAGGGAATCTGAAGCCTTCTTCTGACTCCGCCGAGCTCAAAAGGG  150

seq1  ATGCACAGACACTTGTGCATAATACCTACACACATAAAAGTCAATAAATC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGACACTTGTGCATAATACCTACACACATAAAAGTCAATAAATC  200

seq1  TTAAAAAATGATAAAAATGAAAGAAAGGGAGGTGGGGTGGATCTGGGAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATGATAAAAATGAAAGAAAGGGAGGTGGGGTGGATCTGGGAGG  250

seq1  AGTTAGGTGGAGGAGTAGGGAGGTGGGGTGGATCTGAGAGGAGTTAGGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGTGGAGGAGTAGGGAGGTGGGGTGGATCTGAGAGGAGTTAGGTG  300

seq1  GAGAAGTAGGGAGGTGGGGTGGATCTGGGAGGAGTTAGGTGGAGGAGTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAGGGAGGTGGGGTGGATCTGGGAGGAGTTAGGTGGAGGAGTAA  350

seq1  GAAGGTCTGGGTGGGTCTGGGAGGAGTTAGGTGGGGAGTGGGAGGTAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCTGGGTGGGTCTGGGAGGAGTTAGGTGGGGAGTGGGAGGTAAAT  400

seq1  GTGATCTTTCCTGAAACAATGATCAAGATGCAGTATTTGGGGCTGGCGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTTTCCTGAAACAATGATCAAGATGCAGTATTTGGGGCTGGCGAG  450

seq1  ATGGCTCAGTGCTTAAGAGCACCGACTGCTCTTCCGAAGGTCCCGAGTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTGCTTAAGAGCACCGACTGCTCTTCCGAAGGTCCCGAGTTC  500

seq1  AAATCCCAGCCACCACGTGGTGGCTCACAACCATCCGTAATGAAATCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGCCACCACGTGGTGGCTCACAACCATCCGTAATGAAATCTGA  550

seq1  TGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATAAAAA  600

seq1  AAAAAAAATCAGTGTATGAAAATTTCAAAAATAATTAATAAAATATATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCAGTGTATGAAAATTTCAAAAATAATTAATAAAATATATTT  650

seq1  AAAAAACGAAGTCAGCAGAGGTTGGGGACAGACTGAATGTAGTTCTGAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACGAAGTCAGCAGAGGTTGGGGACAGACTGAATGTAGTTCTGAGG  700

seq1  CCATGGGATGAGTAGTTAAATGGGAAAGTGACTATAATATTGCTAAATGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGATGAGTAGTTAAATGGGAAAGTGACTATAATATTGCTAAATGG  750

seq1  GTTTGTAGAAGATGAATTC  767
      |||||||||||||||||||
seq2  GTTTGTAGAAGATGAATTC  769

seq1: chr9_78207632_78208649
seq2: B6Ng01-043H11.g_68_1093

seq1  GAATTCACAGTATTTTCCTGAATTTCCCTTTTTCTGGGAGCGATTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTATTTTCCTGAATTTCCCTTTTTCTGGGAGCGATTGCACA  50

seq1  CACTCTCATGGGCAAGGTCAATCTTTGCTGTTGTAGGAAGTGTGGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATGGGCAAGGTCAATCTTTGCTGTTGTAGGAAGTGTGGTGTGC  100

seq1  ATTGGGGGGTGGGCTTTGAGCAAATACAGAGCATTCACCCTCCCAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGGGTGGGCTTTGAGCAAATACAGAGCATTCACCCTCCCAAGGTC  150

seq1  AGATTTTGAATACTGGCTTCTCAGTTCAGTATTGGACATCAAGCATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGAATACTGGCTTCTCAGTTCAGTATTGGACATCAAGCATCAGT  200

seq1  TAACATTACCATAGACAACCTTTCATTGCTGACTGCTTTTCTCCAGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTACCATAGACAACCTTTCATTGCTGACTGCTTTTCTCCAGGATT  250

seq1  CACGAGCATTCACTGAATGCTGCACCTACGGGCTCAGGAAAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGCATTCACTGAATGCTGCACCTACGGGCTCAGGAAAAAAAAAAAA  300

seq1  AAAGTTTGCCTGGGTGGGGGCGTTGAGAAACTGTTAATCTCTCTGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGCCTGGGTGGGGGCGTTGAGAAACTGTTAATCTCTCTGCATTT  350

seq1  CTCCTGGGAGTGAAATTGGTGCCACCTTGCCTGAAGGAAAGTGGTTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGAGTGAAATTGGTGCCACCTTGCCTGAAGGAAAGTGGTTACAG  400

seq1  TTGGCAAAAGTAAGAGCAAGTGAGGTTTGTTTATCTGGGCTTTGGGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAAAGTAAGAGCAAGTGAGGTTTGTTTATCTGGGCTTTGGGAGTG  450

seq1  GTGCTGGAGACTTAAGCCAGGGCCCTGAGCATCCCAGACAGGTGGTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGAGACTTAAGCCAGGGCCCTGAGCATCCCAGACAGGTGGTTCAC  500

seq1  TTACCCACCAATCCCAGGAGCTTCCTGCTTTTAGAACAGCAGTTTTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACCAATCCCAGGAGCTTCCTGCTTTTAGAACAGCAGTTTTCCCC  550

seq1  CTAGAAATTTAGCCTACAGACATGAAAACAAAACAACAGTACTCAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATTTAGCCTACAGACATGAAAACAAAACAACAGTACTCAATGAA  600

seq1  TTCCACACACCTGTAAAGACAAAAGGTCCGAATACCCAATGGCCCTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACACCTGTAAAGACAAAAGGTCCGAATACCCAATGGCCCTTCAA  650

seq1  AAAGAGCTAATTAAATGGAATATCTGACATGGGGAAAGAGGAACATATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTAATTAAATGGAATATCTGACATGGGGAAAGAGGAACATATTA  700

seq1  TACATTTATAACTGGAACTCTGTTATAACTGAAACTCTGGCTGGTTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATAACTGGAACTCTGTTATAACTGAAACTCTGGCTGGTTGGTG  750

seq1  GGTCATGCCTATAATCCCAACAACCTGGAGACTAAGGAGAGAGGGTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGCCTATAATCCCAACAACCTGGAGACTAAGGAGAGAGGGTTGCC  800

seq1  ACAAG-TTCAAGGCCAGACTGGTCTACATAACAATGAGACCCTGTCTCAA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTCAAGGCCAGACTGGTCTACATAACAATGAGACCCTGTCTCAA  850

seq1  AAACC-AAACAGGGTCAGCAAGATGGCTCAGCTTGCAGCCAGGCCCTGAC  898
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACCAAAACAGGGTCAGCAAGATGGCTCAGCTTGCAGCCAGGCCTTGAC  900

seq1  GTCCTGAATCTTAGCCCC-TGAA-CCTTCAGATGAAAGGAGAGGTCCAAC  946
      |||||||||||||||||| |||| |||||| |||||||||||||||||||
seq2  GTCCTGAATCTTAGCCCCTTGAACCCTTCAAATGAAAGGAGAGGTCCAAC  950

seq1  T-CCAGCAAGATA-TCCTCTGATCCCTACCTTCTCCAGAGAGGGAGAGG-  993
      | ||||||||||| |||||||||||||||||||| |||||||||||||| 
seq2  TCCCAGCAAGATATTCCTCTGATCCCTACCTTCTTCAGAGAGGGAGAGGT  1000

seq1  GGTATACCGAGA-GGGGGAGGGGGAG  1018
      ||||||| |||| |||||| ||||||
seq2  GGTATACTGAGAGGGGGGATGGGGAG  1026