BAC Information

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BAC

Clone NameB6Ng01-043K05
Chromosome9 (Build37)
Map Location 121,933,486 - 122,152,253
singlet/doubletdoublet
Overlap geneLOC100040121, Snrk, Tmem16k
Upstream geneUlk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492
Downstream geneAbhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043K05.bB6Ng01-043K05.g
ACCDH869641DH869642
length780859
definitionDH869641|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K05, 5' end.DH869642|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,151,475 - 122,152,253)(121,933,486 - 121,934,346)
sequence
gaattctttggcagctccgactatggtcccagctcttggcacctgccacc
catgtgttcctgcagcgctgcagagcagctggagtaaccagtgatacagg
aatgctctgcagaacagcgatttcctgttcagcctctgccctcgtgcaac
cagatctcatcacaaccctggctgagggtctgttctagaggagaggagac
aaccattcgtccctcttcaggaggtggcggcacttcagagtgaccattgc
agggctcatttttttgagttttttaccttggtttaaatgttctttcagtg
tttaagatgttggttggggtctggtcaggcactgcctcagcggctcatgt
ttctgttacatcaccatgttggatttgctttctttgctgagcctctgtca
ctctgtcactctgtcactctgtcactctgtcccttcagcagatcgattgc
tcagtagcttcagaggggctttggcttcttttgtggaccccaaggtgcca
tgatgcagacaggaccagaagttagtagactggcattatgtgtaaaatgc
agctgcctgtatctgtccctggctaataaacactttcccagggacgggca
tacattcagagttgtaaagatgaattacagctttctaacattgttaagtg
ccaagaggggcaaagggtctgagttttttcgttttacatatattgggtaa
aagaaaaaaaaatgaatgtttcaactgaaggtgtgtgcgcctttgtgtga
gtataacatacttgcgtgtgtgtatgtgtg
gaattcctagggaatagaaggccaggacagagcagagcagactgacaaga
tacaacagaagcggcatgctgcggggccgagctttcgagtaccacagagg
gaatcccaccaaagaaactgctgatcagaggcaatggaaagagaggccag
ggtggacacagtgcaggtgtgagctagcttctgcaccctgctcaggtatt
cagtcatctgagaggtctgcctgcaagtcttcagctgggctatcctgtaa
gctgaggtatccctcagctgtctccatacctacagatagatcatttcacc
cactgagacaggcagaggcatggcgtgaggctgaggaagcacatctatgg
tgatcaaggcagagcctggggaggaagatggcagcgcacaaggccatggc
tcaggatccaggcaggatgagggggagagagaaacaagagtacagagtaa
gagtcaggcaatcaaatgtgaagctcctagcagtcagggtctgaagggcc
cctgagtacaaaggatgtacaaagggtttgagatgtacacatagattttg
aagggaagccagctagggacatattatagaccaggctggggatgtattat
agaccaggctggggatatattatacaccaggctggggatgtattatagac
caggctggggatgcattatacaccaggctggggatgtattatagaccagg
ctgtggacgtattatagaccaggctagggacatattatacaccagctggg
gacgtattatagaccaggttggggatatattatacaccagtctggggatg
tatatatcccaggctgtgggatgtatataggcaggctgtggatggtatta
tagaccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122151475_122152253
seq2: B6Ng01-043K05.b_33_812 (reverse)

seq1  CACACATACACACACGCAAGTATGTTATACTCACACAAAGGCGCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACACACGCAAGTATGTTATACTCACACAAAGGCGCACACAC  50

seq1  CTTCAGTTGAAACATTCATTTTTTTTTCTTTTACCCAATATATGTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGAAACATTCATTTTTTTTTCTTTTACCCAATATATGTAAAAC  100

seq1  G-AAAAACTCAGACCCTTTGCCCCTCTTGGCACTTAACAATGTTAGAAAG  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACTCAGACCCTTTGCCCCTCTTGGCACTTAACAATGTTAGAAAG  150

seq1  CTGTAATTCATCTTTACAACTCTGAATGTATGCCCGTCCCTGGGAAAGTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTCATCTTTACAACTCTGAATGTATGCCCGTCCCTGGGAAAGTG  200

seq1  TTTATTAGCCAGGGACAGATACAGGCAGCTGCATTTTACACATAATGCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAGCCAGGGACAGATACAGGCAGCTGCATTTTACACATAATGCCA  250

seq1  GTCTACTAACTTCTGGTCCTGTCTGCATCATGGCACCTTGGGGTCCACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTAACTTCTGGTCCTGTCTGCATCATGGCACCTTGGGGTCCACAA  300

seq1  AAGAAGCCAAAGCCCCTCTGAAGCTACTGAGCAATCGATCTGCTGAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCAAAGCCCCTCTGAAGCTACTGAGCAATCGATCTGCTGAAGGG  350

seq1  ACAGAGTGACAGAGTGACAGAGTGACAGAGTGACAGAGGCTCAGCAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGACAGAGTGACAGAGTGACAGAGTGACAGAGGCTCAGCAAAGA  400

seq1  AAGCAAATCCAACATGGTGATGTAACAGAAACATGAGCCGCTGAGGCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATCCAACATGGTGATGTAACAGAAACATGAGCCGCTGAGGCAGT  450

seq1  GCCTGACCAGACCCCAACCAACATCTTAAACACTGAAAGAACATTTAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCAGACCCCAACCAACATCTTAAACACTGAAAGAACATTTAAAC  500

seq1  CAAGGTAAAAAACTCAAAAAAATGAGCCCTGCAATGGTCACTCTGAAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAAAAACTCAAAAAAATGAGCCCTGCAATGGTCACTCTGAAGTG  550

seq1  CCGCCACCTCCTGAAGAGGGACGAATGGTTGTCTCCTCTCCTCTAGAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCACCTCCTGAAGAGGGACGAATGGTTGTCTCCTCTCCTCTAGAACA  600

seq1  GACCCTCAGCCAGGGTTGTGATGAGATCTGGTTGCACGAGGGCAGAGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCAGCCAGGGTTGTGATGAGATCTGGTTGCACGAGGGCAGAGGCT  650

seq1  GAACAGGAAATCGCTGTTCTGCAGAGCATTCCTGTATCACTGGTTACTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAAATCGCTGTTCTGCAGAGCATTCCTGTATCACTGGTTACTCC  700

seq1  AGCTGCTCTGCAGCGCTGCAGGAACACATGGGTGGCAGGTGCCAAGAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCTGCAGCGCTGCAGGAACACATGGGTGGCAGGTGCCAAGAGCT  750

seq1  GGGACCATAGTCGGAGCTGCCAAAGAATTC  779
      ||||||||||||||||||||||||||||||
seq2  GGGACCATAGTCGGAGCTGCCAAAGAATTC  780

seq1: chr9_121933486_121934346
seq2: B6Ng01-043K05.g_69_927

seq1  GAATTCCTAGGGAATAGAAGGCCAGGACAGAGCAGAGCAGACTGACAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGGAATAGAAGGCCAGGACAGAGCAGAGCAGACTGACAAGA  50

seq1  TACAACAGAAGCGGCATGCTGCGGGGCCGAGCTTTCGAGTACCACAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGAAGCGGCATGCTGCGGGGCCGAGCTTTCGAGTACCACAGAGG  100

seq1  GAATCCCACCAAAGAAACTGCTGATCAGAGGCAATGGAAAGAGAGGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCACCAAAGAAACTGCTGATCAGAGGCAATGGAAAGAGAGGCCAG  150

seq1  GGTGGACACAGTGCAGGTGTGAGCTAGCTTCTGCACCCTGCTCAGGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACACAGTGCAGGTGTGAGCTAGCTTCTGCACCCTGCTCAGGTATT  200

seq1  CAGTCATCTGAGAGGTCTGCCTGCAAGTCTTCAGCTGGGCTATCCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCTGAGAGGTCTGCCTGCAAGTCTTCAGCTGGGCTATCCTGTAA  250

seq1  GCTGAGGTATCCCTCAGCTGTCTCCATACCTACAGATAGATCATTTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTATCCCTCAGCTGTCTCCATACCTACAGATAGATCATTTCACC  300

seq1  CACTGAGACAGGCAGAGGCATGGCGTGAGGCTGAGGAAGCACATCTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGACAGGCAGAGGCATGGCGTGAGGCTGAGGAAGCACATCTATGG  350

seq1  TGATCAAGGCAGAGCCTGGGGAGGAAGATGGCAGCGCACAAGGCCATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGGCAGAGCCTGGGGAGGAAGATGGCAGCGCACAAGGCCATGGC  400

seq1  TCAGGATCCAGGCAGGATGAGGGGGAGAGAGAAACAAGAGTACAGAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCCAGGCAGGATGAGGGGGAGAGAGAAACAAGAGTACAGAGTAA  450

seq1  GAGTCAGGCAATCAAATGTGAAGCTCCTAGCAGTCAGGGTCTGAAGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGCAATCAAATGTGAAGCTCCTAGCAGTCAGGGTCTGAAGGGCC  500

seq1  CCTGAGTACAAAGGATGTACAAAGGGTTTGAGATGTACACATAGATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTACAAAGGATGTACAAAGGGTTTGAGATGTACACATAGATTTTG  550

seq1  AAGGGAAGCCAGCTAGGGACATATTATAGACCAGGCTGGGGATGTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGCCAGCTAGGGACATATTATAGACCAGGCTGGGGATGTATTAT  600

seq1  AGACCAGGCTGGGGATATATTATACACCAGGCTGGGGATGTATTATAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGGGATATATTATACACCAGGCTGGGGATGTATTATAGAC  650

seq1  CAGGCTGGGGATGCATTATACACCAGGCTGGGGATGTATTATAGACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGGGATGCATTATACACCAGGCTGGGGATGTATTATAGACCAGG  700

seq1  CTGTGGACGTATTATAGACCAGGCTAGGGACATATTATACACCAGGCTGG  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGTGGACGTATTATAGACCAGGCTAGGGACATATTATACACCA-GCTGG  749

seq1  GGACGTATTATAGACCAGGTTGGGGATATATTATACACCAGGCTGGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGACGTATTATAGACCAGGTTGGGGATATATTATACACCAGTCTGGGGAT  799

seq1  GTATTATACACCAGGCTG-GGGATGTATTATAGGCCAGGCTGGGGAT-GT  848
      ||| ||||  |||||||| |||||||| |||||| ||||||| |||| ||
seq2  GTA-TATATCCCAGGCTGTGGGATGTA-TATAGG-CAGGCTGTGGATGGT  846

seq1  ATTATAGACCAGG  861
      |||||||||||||
seq2  ATTATAGACCAGG  859