BAC Information

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BAC

Clone NameB6Ng01-043K06
Chromosome11 (Build37)9 (Build37)
Map Location 21,875,647 - 21,876,530119,328,058 - 119,328,792
singlet/doubletsingletsinglet
Overlap geneLOC666047
Upstream genePeli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494
Downstream geneOtx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043K06.bB6Ng01-043K06.g
ACCDH869643DH869644
length892928
definitionDH869643|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K06, 5' end.DH869644|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,875,647 - 21,876,530)(119,328,058 - 119,328,792)
sequence
gaattcaccatcttcctgactctactggtccaattcaggaccactccttg
gctgtctcttcaaatttcatataatttttctccctctccccctcttctta
cttttgagacaagatctcagtctgtaactctggctggcctggaccttgca
gtgtaagtactaggattaaaccattttctatgcctgcttctttcttcctt
tttgaaatagggtcttaaaatgttgcctaggctgcctgcaaattctaatg
tgattgctgcctcattctccccaatgaaaacctggattccagttccaggt
tttcctatttctgtaaaaaattgttctttggggtgggagagggaactgaa
gagatagctcagcagttaaaagcatccatgtttggttatcagcagtcatg
ttgagtgcctcatgactgtttgtaactccagttctaggggttccaatgcc
ctcttcttgcctccattggtaccccaatacctgtgtagattaggctagcc
ttgaactcacaagatctgtctgcctttgtctgtccagtgctgagattaaa
gcagtataccaccgtgcttggccacactggctttatttggttctggagat
aaatatcaaggcttcacgtatactagctaagcattcagccagctgacctt
catttcccagctctctcttccttccccattttcatgtatcatctcaaaga
aacagactctaaaaacgtaggggaaagtatgtggacggaaagaggaagat
taaacagaaaaatagtcatggaaggccattcaccagcattgactttactc
cgtgagttaggatttcccttgtaggaaacttggggggcaagcttgtcaag
cttcccatctataaagacagatatctgtctgcaacctagatc
gaattccagagcggaaatgaagaccatgccatttggctgcatactgcaca
ttcagagtcactgaccaccctgattttagaaggtcattgatattcctgtt
tgtcttgctgcaactgctgtaacaatgatactaatttactactgtgattt
aagaattttgggacacacacatggggtggggggaggataagatgggtttt
ctgttttactcctggttttatacctggttttggtggcatcttccctccag
gacattaaagaaatatttatttttaattgtgtgagtctgtgcttgagtcc
tttctaagagcagtgcttgctcttaaagttggagctctctttccagcact
tcaatactatttatttgtttgtttatttagagacagggtctcacagggtc
tttctgtgtagccctggttgctctagaactcactatgtaaaccaggctgg
cctagaactcgtagagatccagttgcctctgtctctgtctccttagcact
gggtgggattaaagatctgtgccactacaaccaggtgtcagtacattcag
ataaagggcagatggagggagattctggttttttgttttctttttttttt
ttcttttttaagatttattaattttgctctctccctgccccccaccccct
tttccgctgccaccttgcccctctcccaataaacctcacatggaaaataa
aagatttattaattttattattctatgtgtatgagtgttttgcctgcatg
tacatgtctggtaccctatacaaaggttgtgagaggtcatggtatccccc
tagaactggatttacctatgggttgttagaaaccatgctggatgctggaa
tataaccatagttcctttcaggagcagccatgttctaaccctgagcatcc
tctctgctttgctttcatggacttgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_21875647_21876530
seq2: B6Ng01-043K06.b_39_929 (reverse)

seq1  ATCTAGGTTGCAGACAGATATCTGTCTTTATAGATGGG-AGCCTGACATG  49
      |||||||||||||||||||||||||||||||||||||| ||| ||||| |
seq2  ATCTAGGTTGCAGACAGATATCTGTCTTTATAGATGGGAAGCTTGACAAG  50

seq1  CTTGCCCCCC-AGTTTCCTAC-ATGGAAATCCTAACTCACGGAGT-AAGT  96
      |||||||||| |||||||||| | ||||||||||||||||||||| ||||
seq2  CTTGCCCCCCAAGTTTCCTACAAGGGAAATCCTAACTCACGGAGTAAAGT  100

seq1  CAATGCTGGTG-ATGGCCTTCCATGACTATTTTTCTGTTTAATCTTCCTC  145
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGGTGAATGGCCTTCCATGACTATTTTTCTGTTTAATCTTCCTC  150

seq1  TTTCCGTCC-CATACTTTCCCCTACGTTTTTAGAGTCTGTTTCTTTGAGA  194
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTCCACATACTTTCCCCTACGTTTTTAGAGTCTGTTTCTTTGAGA  200

seq1  TGATACATG-AAATGGGGAAGGAAGAGAGAGCTGGGAAATGAAGGTCAGC  243
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGAAAATGGGGAAGGAAGAGAGAGCTGGGAAATGAAGGTCAGC  250

seq1  TGGCTGAATGCTTAGCTAGTATACGTGAAGCCTTGATATTTATCTCCAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATGCTTAGCTAGTATACGTGAAGCCTTGATATTTATCTCCAGA  300

seq1  ACCAAATAAAGCCAGTGTGGCCAAGCACGGTGGTATACTGCTTTAATCTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAAAGCCAGTGTGGCCAAGCACGGTGGTATACTGCTTTAATCTC  350

seq1  AGCACTGGACAGACAAAGGCAGACAGATCTTGTGAGTTCAAGGCTAGCCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGACAGACAAAGGCAGACAGATCTTGTGAGTTCAAGGCTAGCCT  400

seq1  AATCTACACAGGTATTGGGGTACCAATGGAGGCAAGAAGAGGGCATTGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACACAGGTATTGGGGTACCAATGGAGGCAAGAAGAGGGCATTGGA  450

seq1  ACCCCTAGAACTGGAGTTACAAACAGTCATGAGGCACTCAACATGACTGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAGAACTGGAGTTACAAACAGTCATGAGGCACTCAACATGACTGC  500

seq1  TGATAACCAAACATGGATGCTTTTAACTGCTGAGCTATCTCTTCAGTTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACCAAACATGGATGCTTTTAACTGCTGAGCTATCTCTTCAGTTCC  550

seq1  CTCTCCCACCCCAAAGAACAATTTTTTACAGAAATAGGAAAACCTGGAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCACCCCAAAGAACAATTTTTTACAGAAATAGGAAAACCTGGAAC  600

seq1  TGGAATCCAGGTTTTCATTGGGGAGAATGAGGCAGCAATCACATTAGAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCAGGTTTTCATTGGGGAGAATGAGGCAGCAATCACATTAGAAT  650

seq1  TTGCAGGCAGCCTAGGCAACATTTTAAGACCCTATTTCAAAAAGGAAGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCAGCCTAGGCAACATTTTAAGACCCTATTTCAAAAAGGAAGAA  700

seq1  AGAAGCAGGCATAGAAAATGGTTTAATCCTAGTACTTACACTGCAAGGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGCATAGAAAATGGTTTAATCCTAGTACTTACACTGCAAGGTC  750

seq1  CAGGCCAGCCAGAGTTACAGACTGAGATCTTGTCTCAAAAGTAAGAAGAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCCAGAGTTACAGACTGAGATCTTGTCTCAAAAGTAAGAAGAG  800

seq1  GGGGAGAGGGAGAAAAATTATATGAAATTTGAAGAGACAGCCAAGGAGTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGGGAGAAAAATTATATGAAATTTGAAGAGACAGCCAAGGAGTG  850

seq1  GTCCTGAATTGGACCAGTAGAGTCAGGAAGATGGTGAATTC  884
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAATTGGACCAGTAGAGTCAGGAAGATGGTGAATTC  891

seq1: chr9_119328058_119328792
seq2: B6Ng01-043K06.g_259_991

seq1  GTTTTCTGTTTTACTCCTGGTTTTATACCTGGTTTTGGTGGCATCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTTTACTCCTGGTTTTATACCTGGTTTTGGTGGCATCTTCCC  50

seq1  TCCAGGACATTAAAGAAATATTTATTTTTAATTGTGTGAGTCTGTGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACATTAAAGAAATATTTATTTTTAATTGTGTGAGTCTGTGCTTG  100

seq1  AGTCCTTTCTAAGAGCAGTGCTTGCTCTTAAAGTTGGAGCTCTCTTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTCTAAGAGCAGTGCTTGCTCTTAAAGTTGGAGCTCTCTTTCCA  150

seq1  GCACTTCAATACTATTTATTTGTTTGTTTATTTAGAGACAGGGTCTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCAATACTATTTATTTGTTTGTTTATTTAGAGACAGGGTCTCACA  200

seq1  GGGTCTTTCTGTGTAGCCCTGGTTGCTCTAGAACTCACTATGTAAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTCTGTGTAGCCCTGGTTGCTCTAGAACTCACTATGTAAACCAG  250

seq1  GCTGGCCTAGAACTCGTAGAGATCCAGTTGCCTCTGTCTCTGTCTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTAGAACTCGTAGAGATCCAGTTGCCTCTGTCTCTGTCTCCTTA  300

seq1  GCACTGGGTGGGATTAAAGATCTGTGCCACTACAACCAGGTGTCAGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGTGGGATTAAAGATCTGTGCCACTACAACCAGGTGTCAGTACA  350

seq1  TTCAGATAAAGGGCAGATGGAGGGAGATTCTGGTTTTTTGTTTTCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAAAGGGCAGATGGAGGGAGATTCTGGTTTTTTGTTTTCTTTTT  400

seq1  TTTTTTTCTTTTTTAAGATTTATTAATTTTGCTCTCTCCCTGCCCCCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTTAAGATTTATTAATTTTGCTCTCTCCCTGCCCCCCAC  450

seq1  CCCCTTTTCCGCTGCCACCTTGCCCCTCTCCCAATAAACCTCACATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTCCGCTGCCACCTTGCCCCTCTCCCAATAAACCTCACATGGAA  500

seq1  AATAAAAGATTTATTAATTTTATTATTCTATGTGTATGAGTGTTTTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGATTTATTAATTTTATTATTCTATGTGTATGAGTGTTTTGCCT  550

seq1  GCATGTACATGTCTGGTACCCTATACAAAGGTTGTGAGAGGTCATGGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACATGTCTGGTACCCTATACAAAGGTTGTGAGAGGTCATGGTAT  600

seq1  -CCCCTAGAACTGGAGTTACAGAT-GGCTGTTAGTAACCATGC-GGGTGC  647
       |||||||||||||| ||||  || || |||||| |||||||| || |||
seq2  CCCCCTAGAACTGGATTTACCTATGGGTTGTTAGAAACCATGCTGGATGC  650

seq1  TGGAATAGAACC-TAGGTCCTTTGCAGGAGCAGCCAGTGCTCTAACCACT  696
      ||||||| |||| ||| |||||| |||||||||||| || ||||||| ||
seq2  TGGAATATAACCATAGTTCCTTT-CAGGAGCAGCCA-TGTTCTAACC-CT  697

seq1  GAGCCATCCCTTCTGCCTTTGCAGTTCATGGACTTGTGA  735
      ||| |||||  |||| ||||||  |||||||||||||||
seq2  GAG-CATCCTCTCTG-CTTTGC-TTTCATGGACTTGTGA  733