BAC Information

Click to search

BAC

Clone NameB6Ng01-044D19
Chromosome9 (Build37)
Map Location 54,386,261 - 54,541,012
singlet/doubletdoublet
Overlap gene4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850
Upstream geneAcat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2
Downstream geneDnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044D19.bB6Ng01-044D19.g
ACCDH870050DH870051
length718713
definitionDH870050|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D19, 5' end.DH870051|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,540,296 - 54,541,012)(54,386,261 - 54,386,973)
sequence
gaattctgatatataacaaaaagccctaagtcgtacttgacagcagtcag
tcagtgctggctactgttatgatacaaactcgacctagatgtaaaaagcc
atgggaggagggggtgagaggtagttcagtggacaaaaatgtttgttgga
caagtgtaagcatctgagttcaaatccccaggatccttgtgaaagccaga
gatgtcctgtggtggggagcatctgtgaccctcgcccttctgtgggaagg
tgagaggcagacaggagtcttgctggatgcttacagactagccggcctgg
tgcaagaaacataaaacagcagagatcctacttggaggtggaaggtaagg
cagggccaaagtggctaattcctttaatgccagcacttgatggaggaaga
ggcaggtaagtttctgagtttaaggccagcttgctctaaagagcaagttt
caggacagtcggtttcacagagaaaccttgtctcaaaacaaaggtggaag
gtaataaccaatacacaagcttgtctgctgatctccacacacatgttgtg
acacatacatgcccacatttaccacaggaatgtgtatgcatacacataca
tgtacactcacacaaagccaagtatggcagacgtttggaaagccccttct
ccagggaacggagtaactcttccccctcacttccattgcaccactcttct
aggatgctaaatgtgtat
gaattcacttgcgttcaaggccagcctgggttataatgtgaaatcttctc
tgaaaaataaatgagtaaataattaaaggatttaaagctaaaatagataa
gtagatagggctgggggcatggctcagtgttatagcacttacgcagcatg
tgggcggggcctaggtttgattccccaataccacaaaaaacaacaaacat
aaattattacattagtaaatagatgagcaagacttggggaaccttttaag
ttttgagcttgcggggggtctaaatcacgctagtcctagccctgtgctcc
tgaagaacaagatcaagctgttcctagagccccagatgcctgaagtgccc
cacccccagctccttgaggaacatcatagatgctcgtgaggaaggcagcc
cttggtcggatgaatctgtactggagagatgatcctctgatactcagggg
caaagctggcccgctcgtagccagcagctcaacccagcccacgtgcgcac
tgtgttacaggggcagtgatcgctgccgccattttgtcatcaaccagctg
cgaaatcgacgttaccttgtctcaggagacaccctcagccacagcaccct
ggatgagctcctacgccattaccaggaggtgcagctcgagccttttgggg
agacccttgctgctgcttgcccacgggtaggcactcttccctgtgagggt
ggggggtgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54540296_54541012
seq2: B6Ng01-044D19.b_43_760 (reverse)

seq1  ATACACATTTAGCATCCTAGAAGAGTGGTGCAATGGAAGTGA-GGGGATG  49
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  ATACACATTTAGCATCCTAGAAGAGTGGTGCAATGGAAGTGAGGGGGAAG  50

seq1  AGTTACTCCGTTCCCTGGAGAAGGGGCTTTCCAAACGTCTGCCCTACTTG  99
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTTACTCCGTTCCCTGGAGAAGGGGCTTTCCAAACGTCTGCCATACTTG  100

seq1  GCTTTGTGTGAGTGTACATGTATGTGTATGCATACACATTCCTGTGGTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTGAGTGTACATGTATGTGTATGCATACACATTCCTGTGGTAA  150

seq1  ATGTGGGCATGTATGTGTCACAACATGTGTGTGGAGATCAGCAGACAAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCATGTATGTGTCACAACATGTGTGTGGAGATCAGCAGACAAGC  200

seq1  TTGTGTCTTGGTTATTACCTTCCACCTTTGTTTTGAGACAAGGTTTCTCT  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTGGTTATTACCTTCCACCTTTGTTTTGAGACAAGGTTTCTCT  250

seq1  GTGAAACCGACTGTCCTGAAACTTGCTCTTTAGAGCAAGCTGGCCTTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACCGACTGTCCTGAAACTTGCTCTTTAGAGCAAGCTGGCCTTAAA  300

seq1  CTCAGAAACTTACCTGCCTCTTCCTCCATCAAGTGCTGGCATTAAAGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAACTTACCTGCCTCTTCCTCCATCAAGTGCTGGCATTAAAGGAA  350

seq1  TTAGCCACTTTGGCCCTGCCTTACCTTCCACCTCCAAGTAGGATCTCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCACTTTGGCCCTGCCTTACCTTCCACCTCCAAGTAGGATCTCTGC  400

seq1  TGTTTTATGTTTCTTGCACCAGGCCGGCTAGTCTGTAAGCATCCAGCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGTTTCTTGCACCAGGCCGGCTAGTCTGTAAGCATCCAGCAAG  450

seq1  ACTCCTGTCTGCCTCTCACCTTCCCACAGAAGGGCGAGGGTCACAGATGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTCTGCCTCTCACCTTCCCACAGAAGGGCGAGGGTCACAGATGC  500

seq1  TCCCCACCACAGGACATCTCTGGCTTTCACAAGGATCCTGGGGATTTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCACAGGACATCTCTGGCTTTCACAAGGATCCTGGGGATTTGAA  550

seq1  CTCAGATGCTTACACTTGTCCAACAAACATTTTTGTCCACTGAACTACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGCTTACACTTGTCCAACAAACATTTTTGTCCACTGAACTACCT  600

seq1  CTCACCCCCTCCTCCCATGGCTTTTTACATCTAGGTCGAGTTTGTATCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCCTCCTCCCATGGCTTTTTACATCTAGGTCGAGTTTGTATCAT  650

seq1  AACAGTAGCCAGCACTGACTGACTGCTGTCAAGTACGACTTAGGGCTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGCCAGCACTGACTGACTGCTGTCAAGTACGACTTAGGGCTTTT  700

seq1  TGTTATATATCAGAATTC  717
      ||||||||||||||||||
seq2  TGTTATATATCAGAATTC  718

seq1: chr9_54386261_54386973
seq2: B6Ng01-044D19.g_66_778

seq1  GAATTCACTTGCGTTCAAGGCCAGCCTGGGTTATAATGTGAAATCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGCGTTCAAGGCCAGCCTGGGTTATAATGTGAAATCTTCTC  50

seq1  TGAAAAATAAATGAGTAAATAATTAAAGGATTTAAAGCTAAAATAGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATAAATGAGTAAATAATTAAAGGATTTAAAGCTAAAATAGATAA  100

seq1  GTAGATAGGGCTGGGGGCATGGCTCAGTGTTATAGCACTTACGCAGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGGGCTGGGGGCATGGCTCAGTGTTATAGCACTTACGCAGCATG  150

seq1  TGGGCGGGGCCTAGGTTTGATTCCCCAATACCACAAAAAACAACAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGGGGCCTAGGTTTGATTCCCCAATACCACAAAAAACAACAAACAT  200

seq1  AAATTATTACATTAGTAAATAGATGAGCAAGACTTGGGGAACCTTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTACATTAGTAAATAGATGAGCAAGACTTGGGGAACCTTTTAAG  250

seq1  TTTTGAGCTTGCGGGGGGTCTAAATCACGCTAGTCCTAGCCCTGTGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGCTTGCGGGGGGTCTAAATCACGCTAGTCCTAGCCCTGTGCTCC  300

seq1  TGAAGAACAAGATCAAGCTGTTCCTAGAGCCCCAGATGCCTGAAGTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACAAGATCAAGCTGTTCCTAGAGCCCCAGATGCCTGAAGTGCCC  350

seq1  CACCCCCAGCTCCTTGAGGAACATCATAGATGCTCGTGAGGAAGGCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAGCTCCTTGAGGAACATCATAGATGCTCGTGAGGAAGGCAGCC  400

seq1  CTTGGTCGGATGAATCTGTACTGGAGAGATGATCCTCTGATACTCAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCGGATGAATCTGTACTGGAGAGATGATCCTCTGATACTCAGGGG  450

seq1  CAAAGCTGGCCCGCTCGTAGCCAGCAGCTCAACCCAGCCCACGTGCGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGGCCCGCTCGTAGCCAGCAGCTCAACCCAGCCCACGTGCGCAC  500

seq1  TGTGTTACAGGGGCAGTGATCGCTGCCGCCATTTTGTCATCAACCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTACAGGGGCAGTGATCGCTGCCGCCATTTTGTCATCAACCAGCTG  550

seq1  CGAAATCGACGTTACCTTGTCTCAGGAGACACCCTCAGCCACAGCACCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCGACGTTACCTTGTCTCAGGAGACACCCTCAGCCACAGCACCCT  600

seq1  GGATGAGCTCCTACGCCATTACCAGGAGGTGCAGCTCGAGCCTTTTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGCTCCTACGCCATTACCAGGAGGTGCAGCTCGAGCCTTTTGGGG  650

seq1  AGACCCTTGCTGCTGCTTGCCCACGGGTAGGCACTCTTCCCTGTGAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTTGCTGCTGCTTGCCCACGGGTAGGCACTCTTCCCTGTGAGGGT  700

seq1  GGGGGGTGGGAGG  713
      |||||||||||||
seq2  GGGGGGTGGGAGG  713