BAC Information

Click to search

BAC

Clone NameB6Ng01-044N10
Chromosome3 (Build37)9 (Build37)
Map Location 94,480,054 - 94,480,844116,324,319 - 116,324,896
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767
Downstream geneSelenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044N10.bB6Ng01-044N10.g
ACCDH870478DH870479
length406572
definitionDH870478|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N10, 5' end.DH870479|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,480,054 - 94,480,844)(116,324,319 - 116,324,896)
sequence
gaattctccactaaaaccatctggacctgcttctgttaattcctgcttct
gtttcattagggagtataggtctgtttaaagtgtttatctgattttgatt
taactttagtaggtataccacctactatatcaagacaactattcattttt
ttacattttccaatggtgtagtatacgtttttttcaagtacatccttaag
attctctgggtcgggctggtgagatggctcagtgggtaagagcaaaacga
ctgctcttccaaaggtcctgagttcaaatcccagcaaccacatggtggct
cacaaccatctgtaatgggatctgactccctcttctggtgtgtctgaaga
cagctacagtgtacttacatataataaataaataaatcttaaaaaaaaaa
agattc
catgctagtgccagcagtgggggtggctttctctcttcctgatttcagtg
accgtgcagcttactctaggcagaggaaaggctggaaatccccacccagg
cttactagagtccatattccttttctacttgctcagtgtacctccgagac
atgttcctaacctctctccacctcttatttaaagtgcttgataagtgaca
aaaactgtcttaaatgatgtcacatgtgtcccttctaaactcttatctgt
gtttctaggcacaagttgtccactcagcatctctctcctgtgtcctccag
tggtaaagtcttcacaaacagagactatattcagagagtgagtttcttct
gaagggaacctggcattgcttatctcaaagataactgtttgctttgcctt
ttgatcaatatgacagtaatccctgggggtgggggtggggtggacatatt
caacataatgacagaataaaagtgggaaagagttagcatgtggccatgaa
tcttggagagaggttggtgagactgctcacttcaggtatacacggtcagt
gtcctgttagggtcttgtcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94480054_94480844
seq2: B6Ng01-044N10.b_250_449 (reverse)

seq1  GAATCTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACATT  50
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  GAATCTTTTTTTTTTT-AAGATTTATTTATTTATTATATGTAAGTACACT  49

seq1  GTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGAT  100
      |||||||||||||||||| |||||||||||||||||||| | |||| |||
seq2  GTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCCCATTACAGAT  99

seq1  GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGA  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGA  149

seq1  AGAGTAGTCG-GGTGCTCTAACCCACTGAGCCATCTCACCAGCCCAAGAG  199
      |||| |||||   |||||| |||||||||||||||||||||||||  || 
seq2  AGAGCAGTCGTTTTGCTCTTACCCACTGAGCCATCTCACCAGCCC--GAC  197

seq1  GAATCTTATAGTATAAAATTTTATAAAACAAGACTGGCTGCTGAGAGGGA  249
        |                                               
seq2  CCA-----------------------------------------------  200

seq1  GGAAGGAAGGAAGGAAGGAAAGAAGAAAGGAAGGAAAGAAGGAAGGGGAA  299
                                                        
seq2  --------------------------------------------------  200

seq1  AAGGAAAAGGAGAGGAGGGAGGGAGGAAGGAAGAGAAGGAAAGAGGAAAG  349
                                                        
seq2  --------------------------------------------------  200

seq1  AAGACAGGGAGAGAGAGAGAGGTCAGCCTATAATTAATCTAAGAGACAGT  399
                                                        
seq2  --------------------------------------------------  200

seq1  AAGTGAAAGAAAGATGAAATTTCAAGACCTGTAAGTCATGTAAAGTACTC  449
                                                        
seq2  --------------------------------------------------  200

seq1  AGAAATTTCTGGTTGTTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAAAA  499
                                                        
seq2  --------------------------------------------------  200

seq1  AAGAAAAACAAACCTGGGTATGCCCTGTAGTTAAAACATTCCTGGGAACA  549
                                                        
seq2  --------------------------------------------------  200

seq1  TCTTGACCATAAGATAAAGGGGAATGTGAAGACATAATAGGGCTATTTGA  599
                                                        
seq2  --------------------------------------------------  200

seq1  ACTGAGTCAACAACTCACAGAACTCTGACACCCTGCACGTACATGTAATC  649
                                                        
seq2  --------------------------------------------------  200

seq1  TTTCTGCTGATGTTTGAATAAGCCAATAGTGTGGTGCTATGCTGACTTCC  699
                                                        
seq2  --------------------------------------------------  200

seq1  ACACCCCTAATCCCCTTACCCCATAAAAACCCCTAGTTTTCAAGCCTCGG  749
                                                        
seq2  --------------------------------------------------  200

seq1  GGTCGAATCCACTGTCTCCTGCATGAGATACGTTTCGACCCA  791
                                                
seq2  ------------------------------------------  200

seq1: chr9_116324319_116324896
seq2: B6Ng01-044N10.g_67_644

seq1  GAATTCCATGCTAGTGCCAGCAGTGGGGGTGGCTTTCTCTCTTCCTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTAGTGCCAGCAGTGGGGGTGGCTTTCTCTCTTCCTGATT  50

seq1  TCAGTGACCGTGCAGCTTACTCTAGGCAGAGGAAAGGCTGGAAATCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACCGTGCAGCTTACTCTAGGCAGAGGAAAGGCTGGAAATCCCCA  100

seq1  CCCAGGCTTACTAGAGTCCATATTCCTTTTCTACTTGCTCAGTGTACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTTACTAGAGTCCATATTCCTTTTCTACTTGCTCAGTGTACCTC  150

seq1  CGAGACATGTTCCTAACCTCTCTCCACCTCTTATTTAAAGTGCTTGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACATGTTCCTAACCTCTCTCCACCTCTTATTTAAAGTGCTTGATAA  200

seq1  GTGACAAAAACTGTCTTAAATGATGTCACATGTGTCCCTTCTAAACTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAAACTGTCTTAAATGATGTCACATGTGTCCCTTCTAAACTCTT  250

seq1  ATCTGTGTTTCTAGGCACAAGTTGTCCACTCAGCATCTCTCTCCTGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTTTCTAGGCACAAGTTGTCCACTCAGCATCTCTCTCCTGTGTC  300

seq1  CTCCAGTGGTAAAGTCTTCACAAACAGAGACTATATTCAGAGAGTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGGTAAAGTCTTCACAAACAGAGACTATATTCAGAGAGTGAGTT  350

seq1  TCTTCTGAAGGGAACCTGGCATTGCTTATCTCAAAGATAACTGTTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAAGGGAACCTGGCATTGCTTATCTCAAAGATAACTGTTTGCTT  400

seq1  TGCCTTTTGATCAATATGACAGTAATCCCTGGGGGTGGGGGTGGGGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTGATCAATATGACAGTAATCCCTGGGGGTGGGGGTGGGGTGGA  450

seq1  CATATTCAACATAATGACAGAATAAAAGTGGGAAAGAGTTAGCATGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCAACATAATGACAGAATAAAAGTGGGAAAGAGTTAGCATGTGGC  500

seq1  CATGAATCTTGGAGAGAGGTTGGTGAGACTGCTCACTTCAGGTATACACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATCTTGGAGAGAGGTTGGTGAGACTGCTCACTTCAGGTATACACG  550

seq1  GTCAGTGTCCTGTTAGGGTCTTGTCATC  578
      ||||||||||||||||||||||||||||
seq2  GTCAGTGTCCTGTTAGGGTCTTGTCATC  578