BAC Information

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BAC

Clone NameB6Ng01-047F14
Chromosome9 (Build37)
Map Location 84,180,228 - 84,320,148
singlet/doubletdoublet
Overlap geneEG666669
Upstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
Downstream geneLOC666672, BC023892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047F14.bB6Ng01-047F14.g
ACCDH872237DH872238
length946974
definitionDH872237|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F14, 5' end.DH872238|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,319,177 - 84,320,148)(84,180,228 - 84,181,230)
sequence
gaattccatctgactccaaattcatgaagatacaaagttgtagtataatt
cagtttgaaagtaaatctaacgttcctatatgttttgttttgatttatgc
gcacttaatcatatgattttttttacaatacacagacagaaaacccaatc
atcaaagcaagatgaagtggataactaaattagcaagtaatttttaagat
ggcaagttttgatcctgagttaatgaaataccgaatagactatttccgtt
tgactaacttgaaaaagtaaattttattctccttctcaacaaatgacata
ccccaacagttattcaaaacttaattaaacctataactcatgttcatacc
atcataattcaaccacccaacttctaacaatgccattctccaaaataagc
ttgatcctggtgaatggctcccaaacagagtttctggcatcctactataa
agagtatatgcaatcagacagactaggtaaattctagtaagtcttaggga
taggatgacattgtttacattgtctaatgagaggaaacaacaataggcat
gacaaatcgatagtaaagcataaggaggtccagagtgaaatatgtggtgg
tgtttatggccagacatgccccatttccagtaaagctgtacaaccaagac
tcagctgtcctgtttgaatacactgagccacagatctcctgataaagtgc
catgtggagcctgtgacccagatcattggtacctatcatcagtacatgtg
acaaatcacctttaaccctgagctagctatccctcagtgtcagaaaagca
gaggaggggaagaaagtagagagaaagggaaacattgatggttgagagga
gacatcatacagagcaaagagagaaatataactgttctttcagtatcagt
cccactagagctgtcagtagctgtggcagtacatatttctgtatgc
gaattcttgggcttggatctgtagatgtctttctggcaaccttggtcccc
tcccactgtccagatgaatagaacccagagagtacattgatgtatgggct
gtcggttttctagattttttttctattctgcttttttttttcaaatatag
acttttttccatttaaatctcatttcttctcttatttcactatgttggga
caaaggaggcagtcatcccttgagtactttgtatcttgttggtcactaga
tatccatcccagttcatcttcagagttctgacttccaggaaatccaggac
cacaaatagaacatcactgttttgttttgttttgtttttgtttttccctc
tcaactctgagtacaggatgaccttcattttatttcttaataatgtccct
actctttcaaagtacgatcccaattagagagacctgtattatgtatttct
acccactttttttttgtgtgtgcatgtatacattcatgtatacaccttca
tagttatgattgcatgcctggaggccagagattgatgattcgtgtcttcc
tcaatgactctccaccttactttctgagacagaaagacactgaccctgag
gttcactgatccagctagatggcctagccgacaagcttcagggatcctct
tgtttccatatccaccacctcgtgattaaaagtctctgtcacttggattc
tggaaatcaaatctggtcttcatgtttctatagttagcactttattgact
gagccaagtctctagtgcttttactggtatttctgtatgaccactacata
gtagtcttaagggtctcatctctgatatctcattgtatgtgacttgatga
gaactgtccatcatcctccacagctcacataataaagtgttgctcccagt
cagagctctgttgggcatatgtgagctatgggagttgtcactgagcagct
tgaagtgcatagctctactacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84319177_84320148
seq2: B6Ng01-047F14.b_47_992 (reverse)

seq1  GCATAACAGAAAATTATGTACTGCCCACAGCTACTGACAGCTCTTAGGTT  50
      |||| |||||||  ||||||||| ||||||||||||||||||| |||  |
seq2  GCAT-ACAGAAA--TATGTACTG-CCACAGCTACTGACAGCTC-TAG--T  43

seq1  GGGACTGATAACTTGAAAAGAACAGTGTATATTTCTCTTCCTTTGCTTCT  100
      ||||||||| |||   |||||||||| |||||||||||  |||||| |||
seq2  GGGACTGAT-ACT--GAAAGAACAGT-TATATTTCTCT--CTTTGC-TCT  86

seq1  GTAATGAATGTCTTCCTCTTCAACCATTCAATTGTTTCCCTTTTCCTCTT  150
      || ||| ||||| ||||| ||||||| |||| |||||||||||  ||| |
seq2  GT-ATG-ATGTC-TCCTC-TCAACCA-TCAA-TGTTTCCCTTT--CTC-T  127

seq1  CTACTTTCTTCCCCTCCTCTGGCTTTTCTTGACACTGGAGGGATAGCTAG  200
      |||||||||||||||||||| ||||||| ||||||| |||||||||||||
seq2  CTACTTTCTTCCCCTCCTCT-GCTTTTC-TGACACT-GAGGGATAGCTAG  174

seq1  CTCAGGGTTAAAGGTGATTTGTCACATGTACTGATGATAGGTACCAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTTAAAGGTGATTTGTCACATGTACTGATGATAGGTACCAATGA  224

seq1  TCTGGGTCACAGGCTCCACATGGCACCTTATCAGGAGATCTGTGGCTCAG  300
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTGGGTCACAGGCTCCACATGGCACTTTATCAGGAGATCTGTGGCTCAG  274

seq1  TGTATTCAAACAGGACAGCTGAGTCTTGGTTGTACAGCTTTACTGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCAAACAGGACAGCTGAGTCTTGGTTGTACAGCTTTACTGGAAAT  324

seq1  GGGGCATGTCTGGCCATAAACACCACCACATATTTCACTCTGGACCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGTCTGGCCATAAACACCACCACATATTTCACTCTGGACCTCCT  374

seq1  TATGCTTTACTATCGATTTGTCATGCCTATTGTTGTTTCCTCTCATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTACTATCGATTTGTCATGCCTATTGTTGTTTCCTCTCATTAGA  424

seq1  CAATGTAAACAATGTCATCCTATCCCTAAGACTTACTAGAATTTACCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAACAATGTCATCCTATCCCTAAGACTTACTAGAATTTACCTAG  474

seq1  TCTGTCTGATTGCATATACTCTTTATAGTAGGATGCCAGAAACTCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGATTGCATATACTCTTTATAGTAGGATGCCAGAAACTCTGTTT  524

seq1  GGGAGCCATTCACCAGGATCAAGCTTATTTTGGAGAATGGCATTGTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCATTCACCAGGATCAAGCTTATTTTGGAGAATGGCATTGTTAGA  574

seq1  AGTTGGGTGGTTGAATTATGATGGTATGAACATGAGTTATAGGTTTAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTGGTTGAATTATGATGGTATGAACATGAGTTATAGGTTTAATT  624

seq1  AAGTTTTGAATAACTGTTGGGGTATGTCATTTGTTGAGAAGGAGAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGAATAACTGTTGGGGTATGTCATTTGTTGAGAAGGAGAATAAA  674

seq1  ATTTACTTTTTCAAGTTAGTCAAACGGAAATAGTCTATTCGGTATTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTTTTCAAGTTAGTCAAACGGAAATAGTCTATTCGGTATTTCAT  724

seq1  TAACTCAGGATCAAAACTTGCCATCTTAAAAATTACTTGCTAATTTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAGGATCAAAACTTGCCATCTTAAAAATTACTTGCTAATTTAGTT  774

seq1  ATCCACTTCATCTTGCTTTGATGATTGGGTTTTCTGTCTGTGTATTGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTCATCTTGCTTTGATGATTGGGTTTTCTGTCTGTGTATTGTAA  824

seq1  AAAAAATCATATGATTAAGTGCGCATAAATCAAAACAAAACATATAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCATATGATTAAGTGCGCATAAATCAAAACAAAACATATAGGAA  874

seq1  CGTTAGATTTACTTTCAAACTGAATTATACTACAACTTTGTATCTTCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGATTTACTTTCAAACTGAATTATACTACAACTTTGTATCTTCATG  924

seq1  AATTTGGAGTCAGATGGAATTC  972
      ||||||||||||||||||||||
seq2  AATTTGGAGTCAGATGGAATTC  946

seq1: chr9_84180228_84181230
seq2: B6Ng01-047F14.g_67_1040

seq1  GAATTCTTGGGCTTGGATCTGTAGATGTCTTTCTGGCAACCTTGGTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCTTGGATCTGTAGATGTCTTTCTGGCAACCTTGGTCCCC  50

seq1  TCCCACTGTCCAGATGAATAGAACCCAGAGAGTACATTGATGTATGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGTCCAGATGAATAGAACCCAGAGAGTACATTGATGTATGGGCT  100

seq1  GTCGGTTTTCTAGATTTTTTTTCTATTCTGCTTTTTTTTTTCAAATATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTTTTCTAGATTTTTTTTCTATTCTGCTTTTTTTTTTCAAATATAG  150

seq1  ACTTTTTTCCATTTAAATCTCATTTCTTCTCTTATTTCACTATGTTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTCCATTTAAATCTCATTTCTTCTCTTATTTCACTATGTTGGGA  200

seq1  CAAAGGAGGCAGTCATCCCTTGAGTACTTTGTATCTTGTTGGTCACTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGGCAGTCATCCCTTGAGTACTTTGTATCTTGTTGGTCACTAGA  250

seq1  TATCCATCCCAGTTCATCTTCAGAGTTCTGACTTCCAGGAAATCCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATCCCAGTTCATCTTCAGAGTTCTGACTTCCAGGAAATCCAGGAC  300

seq1  CACAAATAGAACATCACTGTTTTGTTTTGTTTTGTTTTTGTTTTTCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAGAACATCACTGTTTTGTTTTGTTTTGTTTTTGTTTTTCCCTC  350

seq1  TCAACTCTGAGTACAGGATGACCTTCATTTTATTTCTTAATAATGTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTGAGTACAGGATGACCTTCATTTTATTTCTTAATAATGTCCCT  400

seq1  ACTCTTTCAAAGTACGATCCCAATTAGAGAGACCTGTATTATGTATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCAAAGTACGATCCCAATTAGAGAGACCTGTATTATGTATTTCT  450

seq1  ACCCACTTTTTTTTTGTGTGTGCATGTATACATTCATGTATACACCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTTTTTTTTGTGTGTGCATGTATACATTCATGTATACACCTTCA  500

seq1  TAGTTATGATTGCATGCCTGGAGGCCAGAGATTGATGATTCGTGTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGATTGCATGCCTGGAGGCCAGAGATTGATGATTCGTGTCTTCC  550

seq1  TCAATGACTCTCCACCTTACTTTCTGAGACAGAAAGACACTGACCCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACTCTCCACCTTACTTTCTGAGACAGAAAGACACTGACCCTGAG  600

seq1  GTTCACTGATCCAGCTAGATGGCCTAGCCGACAAGCTTCAGGGATCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGATCCAGCTAGATGGCCTAGCCGACAAGCTTCAGGGATCCTCT  650

seq1  TGTTTCCATATCCACCACCTCGTGATTAAAAGTCTCTGTCACTTGGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCATATCCACCACCTCGTGATTAAAAGTCTCTGTCACTTGGATTC  700

seq1  TGGAAATCAAAATCTGGTCTTCATGTTTCTATAGTTAGCACTTTATTGAC  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATC-AAATCTGGTCTTCATGTTTCTATAGTTAGCACTTTATTGAC  749

seq1  TGAGCCAAGTCTCTAGTGCTTTTACTGGTATTTCTGTTATGACCACTACA  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAGCCAAGTCTCTAGTGCTTTTACTGGTATTTCTG-TATGACCACTACA  798

seq1  TAAGTAGTCTTTAAGGGTCTCATCTCTGATATCTCATTGTATGGTGACTT  850
      | ||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  T-AGTAGTC-TTAAGGGTCTCATCTCTGATATCTCATTGTAT-GTGACTT  845

seq1  GGATGAGAACTGTCCATTCATCCTCCACAGGCTCACATAATTAAAGTGTT  900
       ||||||||||||||| |||||||||||| |||||||||| |||||||||
seq2  -GATGAGAACTGTCCA-TCATCCTCCACA-GCTCACATAA-TAAAGTGTT  891

seq1  TGGCCCCCAGTCAGAGGCTCTGTTTGGGCATATGGTGAGGCCTTAATTGG  950
        || |||||||||| |||||| |||||||||| |||||  ||  ||   
seq2  --GCTCCCAGTCAGA-GCTCTG-TTGGGCATAT-GTGAG--CT--AT---  929

seq1  GGAAGTATGTCACTGGAAGCAGGCTTTGACAGTGCATAGCCTCTACCTAC  1000
      || ||| ||||||||  |||||   |||| ||||||||| ||||| ||||
seq2  GGGAGT-TGTCACTG--AGCAG--CTTGA-AGTGCATAG-CTCTA-CTAC  971

seq1  TTC  1003
      |||
seq2  TTC  974