BAC Information

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BAC

Clone NameB6Ng01-047F17
Chromosome9 (Build37)
Map Location 90,434,716 - 90,440,384
singlet/doubletdoublet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047F17.bB6Ng01-047F17.g
ACCDH872241DH872242
length5511,065
definitionDH872241|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F17, 5' end.DH872242|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,439,828 - 90,440,384)(90,434,716 - 90,435,375)
sequence
taaaactcatgacataactatattaaattagttatgatggtatcaataga
taaaaacaaatatgtcagtggcattgtgaagaaatgtatgtgtactggat
agacataagcaaaagtacaagaaaattttcaggcaaggtaaggtgctggt
ttagaggttctgttttgtttttttggattggtttggtttggtttttggtt
tggtttggcttggcttggcttggcttggcttggcttggcttggcttggct
tttcttccatcttgcatggagcctttctgagtttttagcactgaaagcct
caaatcctgggaaaactttcattggtcttccaatgattacttaaatggag
caagtatggatctgctacatcattcactcccccttcccccattttcttct
ctttgtgtgctttatccacacatcattatgactgttgataggtgataact
tatctaacgtgttggtgttttgccttttatttgtcaaccaaactggtggt
tgaatggctttcccacgaaggtaccatgggtttttagtggtatggttggt
g
gaattcagcatagcgatacactattggcttattcaaacatcagcagaaaa
attacatgtatgtgcagggtgtcagagttctgtgagttgttgactcagtt
cagatagccctgttatgcttcacattcccctttatcttatggtcaagatg
ttcccaggaaggtttaaacttcggggcatacccaggtttgtttttctttt
tttctcagccccaggcagcctctaggctcacaaacaaccagcaatttctg
ggtactttatatgacttacaggtattgaaatttcatctttctttcaaatg
gtgtcttcagtaataaagacttaccttccacttctaggggtaagccaaag
caataacagtagcaatagcctattatattttctcagtctattgggtaacc
ccggctaacaactcaaaagaagacttctcatgaatagtgttggggttttt
gttaaattatttttagctcttgaagggaacattgttgaccagataagaaa
gtttcatttaatctatatacacaaacttgtatgtggtttggtacttttag
tagacagattgcatgagtcattatgacttttccagacatcctccttgtta
tttattctcactgctccttcttcttcctaattagaacccatctctctctt
tcccgtttccatcagatgatttgtaccgtgctattcccttcttatgctcc
cctgcctcccataccagcattggtcttctggactctgtggttagctcaga
acaagcacataaacctgaagatttgtagctaggagcctcagatgacctga
aataaaatgagacgagacatctttttgggtctgtgttacctaacatgacc
ttttatagccccatccacgtttgaaattatcatttattttctttacaact
aaaaagtattctgaatatatatataatactatggataatgaaatgtttta
tatattacattcatcatcatatatgatttaatgaaatgtaattattcatg
tataatatgagaaatataataaataatattcaataatatgaataattata
ggagatggctatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90439828_90440384
seq2: B6Ng01-047F17.b_49_605 (reverse)

seq1  CACCAACCATACCACTAAAAACCCATGGTACCTTCGTGGGAAAGCCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCATACCACTAAAAACCCATGGTACCTTCGTGGGAAAGCCATTC  50

seq1  AACCACCAGTTTGGTTGACAAATAAAAGGCAAAACACCAACACGTTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCAGTTTGGTTGACAAATAAAAGGCAAAACACCAACACGTTAGAT  100

seq1  AAGTTATCACCTATCAACAGTCATAATGATGTGTGGATAAAGCACACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCACCTATCAACAGTCATAATGATGTGTGGATAAAGCACACAAA  150

seq1  GAGAAGAAAATGGGGGAAGGGGGAGTGAATGATGTAGCAGATCCATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAAATGGGGGAAGGGGGAGTGAATGATGTAGCAGATCCATACTT  200

seq1  GCTCCATTTAAGTAATCATTGGAAGACCAATGAAAGTTTTCCCAGGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTTAAGTAATCATTGGAAGACCAATGAAAGTTTTCCCAGGATTT  250

seq1  GAGGCTTTCAGTGCTAAAAACTCAGAAAGGCTCCATGCAAGATGGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTTCAGTGCTAAAAACTCAGAAAGGCTCCATGCAAGATGGAAGAA  300

seq1  AAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAACC  350

seq1  AAACCAAAAACCAAACCAAACCAATCCAAAAAAACAAAACAGAACCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAACCAAACCAAACCAATCCAAAAAAACAAAACAGAACCTCTA  400

seq1  AACCAGCACCTTACCTTGCCTGAAAATTTTCTTGTACTTTTGCTTATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCACCTTACCTTGCCTGAAAATTTTCTTGTACTTTTGCTTATGTC  450

seq1  TATCCAGTACACATACATTTCTTCACAATGCCACTGACATATTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTACACATACATTTCTTCACAATGCCACTGACATATTTGTTTTT  500

seq1  ATCTATTGATACCATCATAACTAATTTAATATAGTTATGTCATGAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGATACCATCATAACTAATTTAATATAGTTATGTCATGAGTTTT  550

seq1  AGAATTC  557
      |||||||
seq2  AGAATTC  557

seq1: chr9_90434716_90435375
seq2: B6Ng01-047F17.g_496_1131

seq1  ATGAATAGTGTTGGGGTTTTTGTTAAATTATTTTTAGCTCTTGAAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGTGTTGGGGTTTTTGTTAAATTATTTTTAGCTCTTGAAGGGAA  50

seq1  CATTGTTGACCAGATAAGAAAGTTTCATTTAATCTATATACACAAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGACCAGATAAGAAAGTTTCATTTAATCTATATACACAAACTTG  100

seq1  TATGTGGTTTGGTACTTTTAGTAGACAGATTGCATGAGTCATTATGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTTTGGTACTTTTAGTAGACAGATTGCATGAGTCATTATGACTT  150

seq1  TTCCAGACATCCTCCTTGTTATTTATTCTCACTGCTCCTTCTTCTTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACATCCTCCTTGTTATTTATTCTCACTGCTCCTTCTTCTTCCTA  200

seq1  ATTAGAACCCATCTCTCTCTTTCCCGTTTCCATCAGATGATTTGTACCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACCCATCTCTCTCTTTCCCGTTTCCATCAGATGATTTGTACCGT  250

seq1  GCTATTCCCTTCTTATGCTCCCCTGCCTCCCATACCAGCATTGGTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCCTTCTTATGCTCCCCTGCCTCCCATACCAGCATTGGTCTTCT  300

seq1  GGACTCTGTGGTTAGCTCAGAACAAGCACATAAACCTGAAGATTTGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGTGGTTAGCTCAGAACAAGCACATAAACCTGAAGATTTGTAGC  350

seq1  TAGGAGCCTCAGATGACCTGAAATAAAATGAGACGAGACATCTTTTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCCTCAGATGACCTGAAATAAAATGAGACGAGACATCTTTTTGGG  400

seq1  TCTGTGTTACCTTAACATGACCTTTTATAGCCCCATCCACGTTTTGAAAT  450
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TCTGTGTTACC-TAACATGACCTTTTATAGCCCCATCCACG-TTTGAAAT  448

seq1  TATCATTTATTTTCTTTACAACTAAAAAGTATTCTGAATATATATTATAA  500
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATCATTTATTTTCTTTACAACTAAAAAGTATTCTGAATATATA-TATAA  497

seq1  TACTATGGATAATGAAAATGTTTTATATATTTAACATTTCATCATCATAT  550
      |||||||||||||| ||||||||||||||||  ||| |||||||||||||
seq2  TACTATGGATAATG-AAATGTTTTATATATT--ACA-TTCATCATCATAT  543

seq1  ATGATATATATGAAAATGTTAATATATTTAATGTATAAATATGAGGAAAA  600
      ||||| || ||| |||||| | ||   || |||||| ||||||||  |||
seq2  ATGATTTA-ATG-AAATGTAATTA---TTCATGTAT-AATATGAG--AAA  585

seq1  TATAATAAATATAATATTTAAT-ATATTAATAATATAATTATATAGTAGT  649
      ||||||||  |||||||| ||| |||| ||||||       ||||| || 
seq2  TATAATAA--ATAATATTCAATAATATGAATAAT-------TATAGGAG-  625

seq1  ATGGCTATATT  660
      |||||||||||
seq2  ATGGCTATATT  636