BAC Information

Click to search

BAC

Clone NameB6Ng01-047H06
Chromosome9 (Build37)
Map Location 82,734,898 - 82,864,353
singlet/doubletdoublet
Overlap geneIrak1bp1, Phip
Upstream gene4930486G11Rik, LOC100039085
Downstream geneLOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047H06.bB6Ng01-047H06.g
ACCDH872308DH872309
length1,0121,157
definitionDH872308|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H06, 5' end.DH872309|Mus musculus domesticus DNA, BAC clone: B6Ng01-047H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,734,898 - 82,735,581)(82,863,170 - 82,864,353)
sequence
gaattcattacctatagacctgtttttgaaaaatattaaataatatcatt
tggggaaaaaatgatatcagaaaaaaaggcatctgtctacacaaaggaac
aaagaacatggaaaatgaaactgttttaatagatatttttcaaaatataa
atctcttaaaatctcactaaaattataaggaaagtagtaataatgtaaag
gccaggaaggaaaagtatgaaagcatacggtttaggccttaggtgcgcac
tatacctcttgtaaatggatcgggataacttagatggatcttattaatac
taaagcagcagctcaactaataagcaatgagggctaaaatagaataataa
taacataaagacaggaattaaacagaagagcaaacaaatacaaaataata
agatcacaggcttatcaataatcttataaaatgtaaatggtctaaatacc
ttcagcaaaagaaagtgttttgtctgggtgtggagacacaggtctgtaaa
ttcaggcagagacatggatctctgtgagttctaggactcacagactatcc
gtttgccaggactgcaaagtgatagtctgtcttttaaaaagaattttaga
ttgtgtaagagtggactccacctctatggagggaagcacactctaaatat
aagaatgttttggttacaagtaatgagatctagaagaacaaaccattcgg
ctgtgactcagctgtggataaactgtaagagtattggccacagtaaacta
cagagcaaagactgttacacacaaagaacaaaatcgttcttaatgataaa
ggagtaatgtaattaagatgatatacaagtccttccacttctaatattac
acaaagtttcagaatactcagtgcaaagataatagaatttaactaattaa
ttagttaaggatacctattttaaaagctgctggtaactttatacctttat
gatgaaatactgacactttgtactagacagtacatacaaagatggtggct
acactatgactc
gaattcagaggaactgaagtcacctggaggcaggaactgagtcagaggtc
tttggagggaggccactaagacctcagtttgttgatttactcccccagct
cagctacttttcttatactgcttaggctgcccaccacccactgtgagtta
gcccctcatcaatttgcaattaaggcacctcacatatttagcctcaggct
tctctgactgaggaaagttcttcaatgagggtccctttgcccagatgtca
catttacaactgagtttttataatacttcttgtaaagatgaagatttttg
agagagtagccacattgtagaatacctttgtattgttgaataattgtttt
tcactttgtaagtaaataagtaagttactggtaacttcaaattcagagat
gaatagaggagctattaattgaatttaattaagtatatgccctaggtagg
tatacatatatttgttatgagtatgctgattaaagtgaaagttattggat
aaaatttagagataagcttaaggaaagtggtaaggtaatagatgtcttct
ttaaactaggaatttccggtctgtatgagggtactttgaagacttgaata
taagtcttttccagtttgggagagagagcagttgagaaggtagttaggta
gtggtagcattatactgttgtttgtttgcttgtttgttttgtttttgtgc
atgtctggttttttttctttcatttttaaattctttgaaaatttcatgca
tgtgcgtgatgaattttagctaatttttgaaattgtaatttaagagtttc
aattaaataccaagctttacttggtagtttataaaattgagcttttaaaa
tgacctacaattataatgagggataaaatgtgttagtaggtataaaggaa
attagtatgtgctaaaggacagaacttcatctttttaatgtatacagtta
ttcttttgtgctagtatcatccatttttacaattagtgcactataaattt
atatgtgtactactatgtgggtatgatggtgattgtgtggtcagaacaac
ttgggggtgttcctcagtacattcacttttttcccagatatttcctgggc
tacacctccagagattacaagcccaggaatccccacctgcttgtcctcaa
tgctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_82734898_82735581
seq2: B6Ng01-047H06.b_43_726

seq1  GAATTCATTACCTATAGACCTGTTTTTGAAAAATATTAAATAATATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCTATAGACCTGTTTTTGAAAAATATTAAATAATATCATT  50

seq1  TGGGGAAAAAATGATATCAGAAAAAAAGGCATCTGTCTACACAAAGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAAAATGATATCAGAAAAAAAGGCATCTGTCTACACAAAGGAAC  100

seq1  AAAGAACATGGAAAATGAAACTGTTTTAATAGATATTTTTCAAAATATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATGGAAAATGAAACTGTTTTAATAGATATTTTTCAAAATATAA  150

seq1  ATCTCTTAAAATCTCACTAAAATTATAAGGAAAGTAGTAATAATGTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAAAATCTCACTAAAATTATAAGGAAAGTAGTAATAATGTAAAG  200

seq1  GCCAGGAAGGAAAAGTATGAAAGCATACGGTTTAGGCCTTAGGTGCGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGGAAAAGTATGAAAGCATACGGTTTAGGCCTTAGGTGCGCAC  250

seq1  TATACCTCTTGTAAATGGATCGGGATAACTTAGATGGATCTTATTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTCTTGTAAATGGATCGGGATAACTTAGATGGATCTTATTAATAC  300

seq1  TAAAGCAGCAGCTCAACTAATAAGCAATGAGGGCTAAAATAGAATAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGCAGCTCAACTAATAAGCAATGAGGGCTAAAATAGAATAATAA  350

seq1  TAACATAAAGACAGGAATTAAACAGAAGAGCAAACAAATACAAAATAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAAAGACAGGAATTAAACAGAAGAGCAAACAAATACAAAATAATA  400

seq1  AGATCACAGGCTTATCAATAATCTTATAAAATGTAAATGGTCTAAATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACAGGCTTATCAATAATCTTATAAAATGTAAATGGTCTAAATACC  450

seq1  TTCAGCAAAAGAAAGTGTTTTGTCTGGGTGTGGAGACACAGGTCTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAAAAGAAAGTGTTTTGTCTGGGTGTGGAGACACAGGTCTGTAAA  500

seq1  TTCAGGCAGAGACATGGATCTCTGTGAGTTCTAGGACTCACAGACTATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCAGAGACATGGATCTCTGTGAGTTCTAGGACTCACAGACTATCC  550

seq1  GTTTGCCAGGACTGCAAAGTGATAGTCTGTCTTTTAAAAAGAATTTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCAGGACTGCAAAGTGATAGTCTGTCTTTTAAAAAGAATTTTAGA  600

seq1  TTGTGTAAGAGTGGACTCCACCTCTATGGAGGGAAGCACACTCTAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAGAGTGGACTCCACCTCTATGGAGGGAAGCACACTCTAAATAT  650

seq1  AAGAATGTTTTGGTTACAAGTAATGAGATCTAGA  684
      ||||||||||||||||||||||||||||||||||
seq2  AAGAATGTTTTGGTTACAAGTAATGAGATCTAGA  684

seq1: chr9_82863170_82864353
seq2: B6Ng01-047H06.g_66_1222 (reverse)

seq1  TCCAGCACTAGAAGGACAAGCAGGTGGGTGGATCCCTGGTGCTTGTAACC  50
      ||||||| |   |||||||||||||||  |||| ||||| |||||||| |
seq2  TCCAGCATT--GAGGACAAGCAGGTGG--GGATTCCTGG-GCTTGTAATC  45

seq1  TACTGTGAGAGTTGTAGGCCAGGGAAATTATCTGGGGAAAAAAAGTGGAT  100
      | |||   ||| ||||| |||||  || ||||||||  ||||||||| ||
seq2  T-CTG---GAGGTGTAGCCCAGG--AAATATCTGGG--AAAAAAGTGAAT  87

seq1  GGTACCTGAAGAACACCCCAAGTTTGTTCTGACCACCACAATCACACATT  150
       ||| |||| ||||||||| |  |||||||||||| ||||||||| || |
seq2  -GTA-CTGAGGAACACCCCCAAGTTGTTCTGACCA-CACAATCAC-CA-T  132

seq1  CATACCCACATAGTAAGTACACATATAAATTTTATAAGTGCACCTAATTT  200
      |||||||||||||| |||||||||||||| ||||| |||||| |||| ||
seq2  CATACCCACATAGT-AGTACACATATAAA-TTTAT-AGTGCA-CTAA-TT  177

seq1  GTAAAAAATGGATGATACTAAGCACCAAAAGAATAACTGTATACATTAAA  250
      || |||||||||||||||| |||| |||||||||||||||||||||||||
seq2  GT-AAAAATGGATGATACT-AGCA-CAAAAGAATAACTGTATACATTAAA  224

seq1  AAGATGAAGTTTCTGTCCTTTAGCACATACTAATTTCCTTTATACCTACT  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAG-TTCTGTCCTTTAGCACATACTAATTTCCTTTATACCTACT  273

seq1  AACACATTTTATCCCTCATTATAATTGTAGGTCATTTTAAAAGCTCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTTATCCCTCATTATAATTGTAGGTCATTTTAAAAGCTCAATT  323

seq1  TTATAAACTACCAAGTAAAGCTTGGTATTTAATTGAAACTCTTAAATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACTACCAAGTAAAGCTTGGTATTTAATTGAAACTCTTAAATTAC  373

seq1  AATTTCAAAAATTAGCTAAAATTCATCACGCACATGCATGAAATTTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAAATTAGCTAAAATTCATCACGCACATGCATGAAATTTTCAA  423

seq1  AGAATTTAAAAATGAAAGAAAAAAAACCAGACATGCACAAAAACAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAAAAATGAAAGAAAAAAAACCAGACATGCACAAAAACAAAACA  473

seq1  AACAAGCAAACAAACAACAGTATAATGCTACCATTACCTAACTACCTTCT  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACAAGCAAACAAACAACAGTATAATGCTACCACTACCTAACTACCTTCT  523

seq1  CAACTGCTCTCTCTCCCAAACTGGAAAAGACTTATATTCAAGTCTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTCTCTCTCCCAAACTGGAAAAGACTTATATTCAAGTCTTCAAA  573

seq1  GTACCCTCATACAGACCGGAAATTCCTAGTTTAAAGAAGACATCTATTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTCATACAGACCGGAAATTCCTAGTTTAAAGAAGACATCTATTAC  623

seq1  CTTACCACTTTCCTTAAGCTTATCTCTAAATTTTATCCAATAACTTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACTTTCCTTAAGCTTATCTCTAAATTTTATCCAATAACTTTCAC  673

seq1  TTTAATCAGCATACTCATAACAAATATATGTATACCTACCTAGGGCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAGCATACTCATAACAAATATATGTATACCTACCTAGGGCATAT  723

seq1  ACTTAATTAAATTCAATTAATAGCTCCTCTATTCATCTCTGAATTTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTAAATTCAATTAATAGCTCCTCTATTCATCTCTGAATTTGAAG  773

seq1  TTACCAGTAACTTACTTATTTACTTACAAAGTGAAAAACAATTATTCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGTAACTTACTTATTTACTTACAAAGTGAAAAACAATTATTCAAC  823

seq1  AATACAAAGGTATTCTACAATGTGGCTACTCTCTCAAAAATCTTCATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAGGTATTCTACAATGTGGCTACTCTCTCAAAAATCTTCATCTT  873

seq1  TACAAGAAGTATTATAAAAACTCAGTTGTAAATGTGACATCTGGGCAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAGTATTATAAAAACTCAGTTGTAAATGTGACATCTGGGCAAAG  923

seq1  GGACCCTCATTGAAGAACTTTCCTCAGTCAGAGAAGCCTGAGGCTAAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTCATTGAAGAACTTTCCTCAGTCAGAGAAGCCTGAGGCTAAATA  973

seq1  TGTGAGGTGCCTTAATTGCAAATTGATGAGGGGCTAACTCACAGTGGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTGCCTTAATTGCAAATTGATGAGGGGCTAACTCACAGTGGGTG  1023

seq1  GTGGGCAGCCTAAGCAGTATAAGAAAAGTAGCTGAGCTGGGGGAGTAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGCCTAAGCAGTATAAGAAAAGTAGCTGAGCTGGGGGAGTAAAT  1073

seq1  CAACAAACTGAGGTCTTAGTGGCCTCCCTCCAAAGACCTCTGACTCAGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACTGAGGTCTTAGTGGCCTCCCTCCAAAGACCTCTGACTCAGTT  1123

seq1  CCTGCCTCCAGGTGACTTCAGTTCCTCTGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCAGGTGACTTCAGTTCCTCTGAATTC  1157