BAC Information

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BAC

Clone NameB6Ng01-047M10
Chromosome9 (Build37)
Map Location 80,757,922 - 80,758,970
singlet/doubletsinglet
Overlap genenone
Upstream geneFilip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M10.bB6Ng01-047M10.g
ACCDH872541DH872542
length1,1411,028
definitionDH872541|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M10, 5' end.DH872542|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcttggatgtggagaaagaggaacactcctccatttttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgctccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatatggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaactcattcacaaa
ggaactcacacaatatatactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaaatgtggacactatgcccctccttagaagtggaaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccagggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggataacaggctccaat
ggagagctagagaagtagcagagctaaactgatctgcaccctatagtgac
cacatatgactacagtacctcggagctctgactctagctgctatgtatca
agatgctagtcgcatcctgggaagaagtcatgaactgcacttatatgcca
gttaggacgtcaggcaaaggggatgggttggttggggaatg
gaattccataactagaaaatgaagaaggggagatgtgatcttgttcactc
agcatttcataatcaaaggcaagataaagaagagcctgactatgtttttt
aaaaaatatattatgaagcataatcctaccatgtccttgtaaggaaaaat
tggaaaactcacctacagacctgtttctctcaatgactgaacaagaaaat
gtaggagacaaagatgcagaagctagtgcacacattcaatgtggtggcag
agtttacacattaagtatagttgcttaattacttgctgtggagactgcca
cagtgatggtgggtatgaaaatgtacagaaacttgtgcttgattacagaa
gtgctttgtagaatttcactaagggaaaatatgatgaattaatacagacc
cctgataggtagacacagagtaaagagctgggtaacacaggtagtttcct
cctcaccctcctgacatctgctaaagtaactggggtctgaccacattgct
ttgttactgctacatgtatttcattatctctggagtggcttgagtaactt
tggagctctaatcaggtggcatgtgatttcatccatccctgacgtgctat
ctacttagttgtccatggacaaaggctgtcatctcctaggaatagaagca
aagagagagccattaatttaactgtatttccacataaaagtatgaacctc
tatgtttatcactggtgaactacacagacacttgagttagatggcaagat
tttttccattaaaagtaggcattcactaaatgcctggacaaatgctagtg
gcagtttgctctctgctatagaaccaagttctggtatgataagtgtgtga
atcatcacaaatgaatcatcttctgactatactgtgcctttcttaacttt
gatttcgcttatcattaactttgatttgtaataaaatgtacttctcttgt
ggaaattctatattttcatttagaaacaattatacattactaaatgaaac
ctgtagagtagagagctgatagcatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80757922_80758970
seq2: B6Ng01-047M10.g_69_1096 (reverse)

seq1  AAGATGCTATTCAAGGCTCTCTTACTCTACAGTTTTTCATTTTAATGTTA  50
      ||||||||| |||  |||||| ||||||||||  |||||||    |  ||
seq2  AAGATGCTA-TCA--GCTCTC-TACTCTACAG-GTTTCATT----TAGTA  41

seq1  ATGTATTATTTTGTTTTCTAAAATGAAAATTATTAGAATTTCCAACAAGA  100
      |||||| |||    ||||| ||||||||||   |||||||||| ||||||
seq2  ATGTATAATT---GTTTCT-AAATGAAAAT--ATAGAATTTCC-ACAAGA  84

seq1  G-AGTACATTTTATTAACAAATCAAAGTTAATGATAAGCGAAATCAAAGT  149
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGTACATTTTATT-ACAAATCAAAGTTAATGATAAGCGAAATCAAAGT  133

seq1  TAAAGAAAGGCAACAAGTATAGTCAGAAGATGATTCATTTGTGATGATTC  199
      | ||||||||||   |||||||||||||||||||||||||||||||||||
seq2  T-AAGAAAGGCA--CAGTATAGTCAGAAGATGATTCATTTGTGATGATTC  180

seq1  AACCACAC-TATCATACCAGAACTTGGTTCTATAGCAGAGAGCAAACTGC  248
      |  ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  A--CACACTTATCATACCAGAACTTGGTTCTATAGCAGAGAGCAAACTGC  228

seq1  CACTAGCATTTGTCCAGGCATTTAGTGAATGCCTACTTTTAATGGAAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACTAGCATTTGTCCAGGCATTTAGTGAATGCCTACTTTTAATGGAA-AA  277

seq1  AATCTTGCCATCTAACTCAAGTGTCTGTGTAGTTCACCAGTGATAAACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCCATCTAACTCAAGTGTCTGTGTAGTTCACCAGTGATAAACAT  327

seq1  AGAGGTTCATACTTTTATGTGGAAATACAGTTAAATTAATGGCTCTCTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCATACTTTTATGTGGAAATACAGTTAAATTAATGGCTCTCTCT  377

seq1  TTGCTTCTATTCCTAGGAGATGACAGCCTTTGTCCATGGACAACTAAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTATTCCTAGGAGATGACAGCCTTTGTCCATGGACAACTAAGTA  427

seq1  GATAGCACGTCAGGGATGGATGAAATCACATGCCACCTGATTAGAGCTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCACGTCAGGGATGGATGAAATCACATGCCACCTGATTAGAGCTCC  477

seq1  AAAGTTACTCAAGCCACTCCAGAGATAATGAAATACATGTAGCAGTAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACTCAAGCCACTCCAGAGATAATGAAATACATGTAGCAGTAACA  527

seq1  AAGCAATGTGGTCAGACCCCAGTTACTTTAGCAGATGTCAGGAGGGTGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGTGGTCAGACCCCAGTTACTTTAGCAGATGTCAGGAGGGTGAG  577

seq1  GAGGAAACTACCTGTGTTACCCAGCTCTTTACTCTGTGTCTACCTATCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACTACCTGTGTTACCCAGCTCTTTACTCTGTGTCTACCTATCAG  627

seq1  GGGTCTGTATTAATTCATCATATTTTCCCTTAGTGAAATTCTACAAAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTATTAATTCATCATATTTTCCCTTAGTGAAATTCTACAAAGCA  677

seq1  CTTCTGTAATCAAGCACAAGTTTCTGTACATTTTCATACCCACCATCACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTAATCAAGCACAAGTTTCTGTACATTTTCATACCCACCATCACT  727

seq1  GTGGCAGTCTCCACAGCAAGTAATTAAGCAACTATACTTAATGTGTAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGTCTCCACAGCAAGTAATTAAGCAACTATACTTAATGTGTAAAC  777

seq1  TCTGCCACCACATTGAATGTGTGCACTAGCTTCTGCATCTTTGTCTCCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACCACATTGAATGTGTGCACTAGCTTCTGCATCTTTGTCTCCTA  827

seq1  CATTTTCTTGTTCAGTCATTGAGAGAAACAGGTCTGTAGGTGAGTTTTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTGTTCAGTCATTGAGAGAAACAGGTCTGTAGGTGAGTTTTCC  877

seq1  AATTTTTCCTTACAAGGACATGGTAGGATTATGCTTCATAATATATTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCCTTACAAGGACATGGTAGGATTATGCTTCATAATATATTTTT  927

seq1  TAAAAAACATAGTCAGGCTCTTCTTTATCTTGCCTTTGATTATGAAATGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACATAGTCAGGCTCTTCTTTATCTTGCCTTTGATTATGAAATGC  977

seq1  TGAGTGAACAAGATCACATCTCCCCTTCTTCATTTTCTAGTTATGGAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAACAAGATCACATCTCCCCTTCTTCATTTTCTAGTTATGGAATT  1027

seq1  C  1049
      |
seq2  C  1028