BAC Information

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BAC

Clone NameB6Ng01-047M22
Chromosome9 (Build37)
Map Location 99,365,304 - 99,509,214
singlet/doubletdoublet
Overlap geneLOC623534, Armc8, Dbr1
Upstream geneRbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras
Downstream geneA4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M22.bB6Ng01-047M22.g
ACCDH872565DH872566
length5571,039
definitionDH872565|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M22, 5' end.DH872566|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,508,657 - 99,509,214)(99,365,304 - 99,366,350)
sequence
gaattccatcttccacaaggggagtgggaacatcttagacctagccacac
cgcccacatggcggaggactgtctgagggattgagtgcccctcaatacca
ctgacaggaactgttacaggctactcttgtgtcacaagcacccccacccc
aaatttacctaacctcaatgggaggtgtttggaggtcaaacttgggggag
gtatttagattcaggttaaatctccctatttttttttccttttacaaaag
taacaaaatgactttatttggagtgaaataattacacagattaagggagc
gatgcacttgatactctaacagcaggcacatgaatccagagtatgagcca
aattaagatctttattagggatctctctctctctctctctctctctctct
ctctctctctctctctctctctctcacacacacagggagagagacagaga
gagacagagtgagacacctagtgtggggtatcaattttgttgaaaaagag
agagagagagcgcaaaccccgttcgggggggagagtgtcaggtttttagc
tctagag
gaattcctgtctgagctggagagttcatgtttcccttactatctcctttt
aaaacaccagaagccctcacgtcccctgtttacagccccaccccctctct
ccctctttctctagctgctatcagccataagtctcataggcactgtgcca
tgtcctttcctgaaccttcctatgagaagagtggcccagctgcatttgag
gaccagagagttagacaggctcccactgggaagatggcttgcattaacag
ccaagatgccagggaaccgggactggatacaacgggtggagggaagcttg
agatacacggctgtttctcataggtgcacagtaaggacggttgggatcag
aatctgccaggcatggcttagtgtaagactctgctgagctttaattacca
gttatccctccagccccgcccccagggaacaatgcggagctggggtcaat
gtaaaagcaagaggaatttatttatttatttatttatttatttagttagt
tagttagttagtttttcaagatagggtttctctgtgtagtcctggctgtc
ctggaactcactctgtagaccaggctggcctcgaactcagaaatccacct
gcctctgcctcccaagtgctgggattaaaggtgtatgccactaccgcccg
accaagaggaatttattgttctagtgcactgggctcatcccagacccgaa
ggagaggtggcaaccccagagaagcagccattaggcacaatgtgattggc
agaacagtgtgacttttaaactgattggtccttagggaatgaggtagcaa
gaagtggccaatggctggtccactggtcttccagagggatgccagccttt
ctcttccaggaggtgaggggtgcctatatgctccctgacctgtctcttct
aggagagagggtgcctggcagattttcaacgttcctgagctgacctctac
atgggaaatctaggaaacacagagagtcatctgtgatttgactcctcaca
agaaatagcctttctacctatcacctcttctctgctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99508657_99509214
seq2: B6Ng01-047M22.b_47_603 (reverse)

seq1  CTCTAGAGCTAAAAACCAGACCTTCATGAGCTAGATGGAGGCTTTCTGCC  50
      ||||||||||||||||| |||  ||     |  ||  | || |||  || 
seq2  CTCTAGAGCTAAAAACCTGACACTCTCCCCCCCGAACG-GGGTTTGCGCT  49

seq1  ATGGCTCAGTCTGCTACAACAAAATAAATACCACATACTAGGTGGCTCAA  100
       |  |||  |||  | |||||||||  ||||| || |||||||| |||| 
seq2  CTCTCTCTCTCTTTTTCAACAAAATTGATACCCCACACTAGGTGTCTCAC  99

seq1  AGAGATGATACTTGTTTCTTATCATTTTGGGAG-GAGAGAGAGAGAGAGA  149
         |    |   ||| || | ||  | || | | ||||||||||||||||
seq2  TCTGTCTCTCTCTGTCTC-TCTCCCTGTGTGTGTGAGAGAGAGAGAGAGA  148

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCTAATAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCTAATAAAG  198

seq1  ATCTTAATTTGGCTCATACTCTGGATTCATGTGCCTGCTGTTAGAGTATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATTTGGCTCATACTCTGGATTCATGTGCCTGCTGTTAGAGTATC  248

seq1  AAGTGCATCGCTCCCTTAATCTGTGTAATTATTTCACTCCAAATAAAGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATCGCTCCCTTAATCTGTGTAATTATTTCACTCCAAATAAAGTC  298

seq1  ATTTTGTTACTTTTGTAAAAGGAAAAAAAAATAGGGAGATTTAACCTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTACTTTTGTAAAAGGAAAAAAAAATAGGGAGATTTAACCTGAA  348

seq1  TCTAAATACCTCCCCCAAGTTTGACCTCCAAACACCTCCCATTGAGGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATACCTCCCCCAAGTTTGACCTCCAAACACCTCCCATTGAGGTTA  398

seq1  GGTAAATTTGGGGTGGGGGTGCTTGTGACACAAGAGTAGCCTGTAACAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTTGGGGTGGGGGTGCTTGTGACACAAGAGTAGCCTGTAACAGT  448

seq1  TCCTGTCAGTGGTATTGAGGGGCACTCAATCCCTCAGACAGTCCTCCGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCAGTGGTATTGAGGGGCACTCAATCCCTCAGACAGTCCTCCGCC  498

seq1  ATGTGGGCGGTGTGGCTAGGTCTAAGATGTTCCCACTCCCCTTGTGGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCGGTGTGGCTAGGTCTAAGATGTTCCCACTCCCCTTGTGGAAG  548

seq1  ATGGAATTC  558
      |||||||||
seq2  ATGGAATTC  557

seq1: chr9_99365304_99366350
seq2: B6Ng01-047M22.g_66_1104

seq1  GAATTCCTGTCTGAGCTGGAGAGTTCATGTTTCCCTTACTATCTCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTGAGCTGGAGAGTTCATGTTTCCCTTACTATCTCCTTTT  50

seq1  AAAACACCAGAAGCCCTCACGTCCCCTGTTTACAGCCCCACCCCCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCAGAAGCCCTCACGTCCCCTGTTTACAGCCCCACCCCCTCTCT  100

seq1  CCCTCTTTCTCTAGCTGCTATCAGCCATAAGTCTCATAGGCACTGTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCTCTAGCTGCTATCAGCCATAAGTCTCATAGGCACTGTGCCA  150

seq1  TGTCCTTTCCTGAACCTTCCTATGAGAAGAGTGGCCCAGCTGCATTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCCTGAACCTTCCTATGAGAAGAGTGGCCCAGCTGCATTTGAG  200

seq1  GACCAGAGAGTTAGACAGGCTCCCACTGGGAAGATGGCTTGCATTAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGAGTTAGACAGGCTCCCACTGGGAAGATGGCTTGCATTAACAG  250

seq1  CCAAGATGCCAGGGAACCGGGACTGGATACAACGGGTGGAGGGAAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGCCAGGGAACCGGGACTGGATACAACGGGTGGAGGGAAGCTTG  300

seq1  AGATACACGGCTGTTTCTCATAGGTGCACAGTAAGGACGGTTGGGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACGGCTGTTTCTCATAGGTGCACAGTAAGGACGGTTGGGATCAG  350

seq1  AATCTGCCAGGCATGGCTTAGTGTAAGACTCTGCTGAGCTTTAATTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCAGGCATGGCTTAGTGTAAGACTCTGCTGAGCTTTAATTACCA  400

seq1  GTTATCCCTCCAGCCCCGCCCCCAGGGAACAATGCGGAGCTGGGGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCTCCAGCCCCGCCCCCAGGGAACAATGCGGAGCTGGGGTCAAT  450

seq1  GTAAAAGCAAGAGGAATTTATTTATTTATTTATTTATTTATTTAGTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGCAAGAGGAATTTATTTATTTATTTATTTATTTATTTAGTTAGT  500

seq1  TAGTTAGTTAGTTTTTCAAGATAGGGTTTCTCTGTGTAGTCCTGGCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTTAGTTTTTCAAGATAGGGTTTCTCTGTGTAGTCCTGGCTGTC  550

seq1  CTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCT  600

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTATGCCACTACCGCCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTATGCCACTACCGCCCG  650

seq1  ACCAAGAGGAATTTATTGTTCTAGTGCACTGGGCTCATCCCAGACCCGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGGAATTTATTGTTCTAGTGCACTGGGCTCATCCCAGACCCGAA  700

seq1  GGAGAGGTGGCAACCCCAGAGAAGCAGCCATTAGGCACAATGTGATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTGGCAACCCCAGAGAAGCAGCCATTAGGCACAATGTGATTGGC  750

seq1  AGAACAGTGTGACTTTTAAACTGATTGGTCCTTAGGGAATGAGGTAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTGTGACTTTTAAACTGATTGGTCCTTAGGGAATGAGGTAGCAA  800

seq1  GAAGTGGCCAATGGCTGGTCCACTGGTCTTCCAGAGGGATGCCAGCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCCAATGGCTGGTCCACTGGTCTTCCAGAGGGATGCCAGCCTTT  850

seq1  CTCTTCCAGGAGGTGAGGGGTGCCTATATGCTCCCTGACCTGTCTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGGAGGTGAGGGGTGCCTATATGCTCCCTGACCTGTCTCTTCT  900

seq1  AGGAGGAGAGGGGTGCCTGGCAGAATTTTCCAACGTTCCTGAGCTGACCT  950
      |||| |||| ||||||||||||||  ||| ||||||||||||||||||||
seq2  AGGA-GAGA-GGGTGCCTGGCAGA--TTTTCAACGTTCCTGAGCTGACCT  946

seq1  CTACATTGGGAAAACCAGGAAACCACAGAGAAGTCCATCTGTGATTTGAC  1000
      ||||| ||||||| | |||||| ||||||| ||| |||||||||||||||
seq2  CTACA-TGGGAAATCTAGGAAA-CACAGAG-AGT-CATCTGTGATTTGAC  992

seq1  T-CTCACAAGAAATAGCCTTTCTACACTATCACCTCTTCTCTGCTCTG  1047
      | ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCTCACAAGAAATAGCCTTTCTAC-CTATCACCTCTTCTCTGCTCTG  1039