BAC Information

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BAC

Clone NameB6Ng01-047N14
Chromosome9 (Build37)
Map Location 17,609,353 - 17,610,096
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710, LOC100040508
Downstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047N14.bB6Ng01-047N14.g
ACCDH872593DH872594
length6401,197
definitionDH872593|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N14, 5' end.DH872594|Mus musculus domesticus DNA, BAC clone: B6Ng01-047N14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagactctttctgcagacaactgaattaatggctaatgctttat
tgttttatggtagtgcttaattagttactgaataggttaaactccttgct
gctatctggaatctaagaacactggaaaaaggctttagctatgttacaat
acaatcttaaaagacatttactataaggtaatgcttaatagagtgcacgt
gaatttatacactagactaacgtggtggaaatttgattattatgggttag
ggaaaaaacgccataattccgggagggaaatttccatggaactcttatcc
tcgtgaaacagcttccaggcttttcgcctgtcaaactgacccaaactgga
gagctgactttcgccagacatccaggaggagagtcctagaaattcatttc
tcatgagcagctttttggcatttctgcctcacaagctgactccaccagag
tgccctggcaattcatggcttttgaaagaagtaaagtttatttttaatct
cctttgattttactcctatattttcccctatatgacacgtgcaaaccaat
ggcttaaaaaaataccacataaatcaggtgttttagtcagaagagcttaa
tgattagagaaattaaacagcagatgctactaaatactgt
gaattctctgtttagatctgttccccgctttttaatagggttatttggtt
ctctggagtctaacttcttgagttctttgtatatattgggtattggtcct
ctatcggatgtaggattagtaaaggtcttttctcaatatgttggttgtca
ttttgtcctgttgacagtgttctttgccttacagaatccttgaagtttta
ggaggtcccgtttgtagattcttgattttagagcataagccattagtgtt
ctgttcaggaactttcccctgtgcccatttgttctaggttcttccctact
attagacttctattagaattttactcttctattagacttagtgtctctgg
ttttatgtggaggtcattgatctacttagacttgagctttgtatagggag
ataacaatggatcaatttgcatttttctacatgttgaccacaagttgaac
cagcaccatttgttgaaactgctgtctttttttccattgaacagttttag
ctctaatttaagtatctgaaaataccctaacaatatagccagagccacaa
atttgctatttagcccttaggtcacaggcttaaacatctcagatgagttt
atattaactgttgtagaaggactgggtctatgtcttgtacttttaaattt
tttgttttaatagaagaaatttatatgaatgaataccttgatttttatca
aaataaattctgtatcaaaataagaaattatgacatcaacttagtaagaa
ttataaaattttccatcaaattagattatggctatacaataaattctagc
tatttcttccctgttccaattatgaccatttctaaactccttaaaaaggc
aaccttagaataacacttccagcccaaagcccagggaactgggacatgac
tctcatcatttctttttaaaaaatattttttatatatgtatttctcatac
attagatgctatcccaaagtccccatacacccctcacacactcctaccac
cattcccattttggctgcattcctgactgggcatataagttgcagtcaat
gggccttcttcagtgatgctgactaggcatcttgatactatgcagctaga
tcaagatctcggaaccgtagttaaggtgttgcacctcaggtgcaatctaa
gccttgacttcttgatccataggtgcgcgtgtgcctctcatcactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17609353_17610096
seq2: B6Ng01-047N14.b_45_777 (reverse)

seq1  ATTTTATGTATGCTTTCACTCCATATATTCTATATATGTT-CATAAGCAG  49
      ||||||||| ||| |||||||||||||||||| ||| ||| |||||||||
seq2  ATTTTATGT-TGC-TTCACTCCATATATTCTA-ATAAGTTCCATAAGCAG  47

seq1  ACACA-CACATGTCTTGTTTTAATATCTCATAACGTTATGCTTGTATCTT  98
      ||||| ||||| || ||||||||||||||||                   
seq2  ACACACCACAT-TC-TGTTTTAATATCTCAT---NNNNNNNNNNNNNNNN  92

seq1  GACAGTATTTAGTAGCATCTGCTTGTTTAATTTTCTCTAATCATTAAGCT  148
       ||||||||||||||||||||| ||||||| |||||||||||||||||| 
seq2  NACAGTATTTAGTAGCATCTGC-TGTTTAA-TTTCTCTAATCATTAAGC-  139

seq1  TCTTCTGACTAAAACACCCTGATTTATGTGGTATTTTTTTAAGCCATTGG  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTCTGACTAAAACA-CCTGATTTATGTGGTATTTTTTTAAGCCATTGG  188

seq1  TTTGCACGTGTCATATAGGGGAAAATATAGGAGTAAAATCAAAGGAGATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACGTGTCATATAGGGGAAAATATAGGAGTAAAATCAAAGGAGATT  238

seq1  AAAAATAAAACTTTACTTCTTTCAAAAGCCATGAATTGCCAGGGCACTCT  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAT-AAACTTTACTTCTTTCAAAAGCCATGAATTGCCAGGGCACTCT  287

seq1  GGTGGAGTCAGCTTGTGAGGCAGAAATGCCAAAAAGCTGCTCATGAGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTCAGCTTGTGAGGCAGAAATGCCAAAAAGCTGCTCATGAGAAA  337

seq1  TGAATTTCTAGGACTCTCCTCCTGGATGTCTGGCGAAAGTCAGCTCTCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCTAGGACTCTCCTCCTGGATGTCTGGCGAAAGTCAGCTCTCCA  387

seq1  GTTTGGGTCAGTTTGACAGGCGAAAAGCCTGGAAGCTGTTTCACGAGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTCAGTTTGACAGGCGAAAAGCCTGGAAGCTGTTTCACGAGGAT  437

seq1  AAGAGTTCCATGGAAATTTCCCTCCCGGAATTATGGCGTTTTTTCCCTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCCATGGAAATTTCCCTCCCGGAATTATGGCGTTTTTTCCCTAA  487

seq1  CCCATAATAATCAAATTTCCACCACGTTAGTCTAGTGTATAAATTCACGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAATAATCAAATTTCCACCACGTTAGTCTAGTGTATAAATTCACGT  537

seq1  GCACTCTATTAAGCATTACCTTATAGTAAATGTCTTTTAAGATTGTATTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTATTAAGCATTACCTTATAGTAAATGTCTTTTAAGATTGTATTG  587

seq1  TAACATAGCTAAAGCCTTTTTCCAGTGTTCTTAGATTCCAGATAGCAGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGCTAAAGCCTTTTTCCAGTGTTCTTAGATTCCAGATAGCAGCA  637

seq1  AGGAGTTTAACCTATTCAGTAACTAATTAAGCACTACCATAAAACAATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTAACCTATTCAGTAACTAATTAAGCACTACCATAAAACAATAA  687

seq1  AGCATTAGCCATTAATTCAGTTGTCTGCAGAAAGAGTCTGGAATTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGCCATTAATTCAGTTGTCTGCAGAAAGAGTCTGGAATTC  733