BAC Information

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BAC

Clone NameB6Ng01-048H18
Chromosome9 (Build37)
Map Location 52,303,519 - 52,404,539
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048H18.bB6Ng01-048H18.g
ACCDH873028DH873029
length1,0471,019
definitionDH873028|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H18, 5' end.DH873029|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,403,465 - 52,404,539)(52,303,519 - 52,304,555)
sequence
gaattccatgaaaatatcctttctaacatggactgcaggtgcatggtgac
aactttgctgatgtgggggtcattgtaaaagagcagatgaggcaggcaag
aagctaaacgagttccattttctcagtgtggaaactaatcactggctgtt
tgttttaatcagctacatttgacaattgttttatgcaattgtttgaagaa
ctgcacacatatgtgatgataaagatgaagcatttcaagtgttttctggt
ctgcaccactgcagttctaatgtggtttagtaatcccattctttatcttt
tctcataggtttctgatggtcaaggaagaagttccccctttccctcctag
aagtgaggaaatgtttattcaaatgatatcacctatactggatttttagg
ccattgattaaattaagagtgttaacatttcacagtgttaaaggcagggg
ctgcataccttggagagtcacatggtggtaatggtgtaaacttgccttag
catgctcatgtgactttgaacatataccgatcatgtgaaaacatgtttaa
tccatgacatgtctgtatggttaattcatgggtcctaaggaaccttatgc
atatgatatccccaaatctatgagtggaaatatatatttgcacaatttct
tgtcatatttaaaaattgagacatctatatattgggaaaggaaggaaaga
taatactatacctacaatagtgaatatgaacatataatttctacagtcaa
tactatagacagttctcatacacatgatcagtgaaagagagaagcagatg
aacagacatgagatgtcatcccactcagtcaagtcacaactggcaagaca
gacatactgttaaggatgcatacactgataattttgaatagaaaaagaaa
agcagcaggaatatgataaccaaaaagtcaggactttgtcactctgagag
gtgtagatggagcagagagtacacagactgagctctgggactttgtctgt
actgtggtgagtggctgctaacattggtagagaggaatatagttcta
gaattctccggcttgtcatgttttaataagagctcatcgggtccagcttt
gttggaaagtcaggctgttgaatgttcctgggagcttggtggtgttgagg
gaggaacctgctagcccagcaggtagctcaggtgatgtgcaaagatgggc
gaacacagctcctccttctcaggggcatcagagagaaaacagtggagaaa
ggctgaggtagtagattgacagctctgagtcctcagctggtaatttagag
taagagagagggggcgctaaagagcaagagagcatgagagctggagagag
cgagagcaagagggagagagaaagaacgaagtattttttggcatctaaat
atcaggtcttattctatttggtggggaataaatcaggaaaaggccatcac
aaaagtatttttaaatacccaagaagacacaaaaagtaaagaaaacagcc
taaaaagagatacccccaaatagcatttatagctgagtcttggagtctgg
gtacaatttaaagtttgttctctatgtatgtttttcatctgatatattct
caaattacagtgtaagttcagttgaaggggagagggtctttcatttggat
aataaaacagatggttaagtgccttggaaaccaagtcccatggcttcaca
actcactagctgcgtggccttaagccaagttccatgcccgcttggaacat
gagtatatttatttatatagctcactccaaggcaactattatactggtat
aattattattatacactgtacctgcagaagtattatttcgtctaagtggg
tactggttaggttttcggcttttaagtgaactagctactttgttttatta
taagttgctaaaaataattccaagtgggatataagtgttttataatgggt
tgttggcttaagtatctgcatgcttaactcattgctgctgtctcagtcca
gaacatggcagtaatggagtgtatagcggagaatttagagagtcatagga
tgtagctagacatggacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52403465_52404539
seq2: B6Ng01-048H18.b_41_1087 (reverse)

seq1  TAGAACTAAATTAATTCTTCTCTACCAAAATGTAGCAGCCAACTTCACCC  50
      ||||||||     |||| ||||||||||  | |||||||||   ||||| 
seq2  TAGAACTA----TATTCCTCTCTACCAATGT-TAGCAGCCA--CTCACC-  42

seq1  AACAGTACAGACAAAGTCCCAAGAAGCTTCCAGTTCTGGTGTACCTCTCT  100
       ||||||||||||||||||||   ||||  ||| ||| ||||| ||||| 
seq2  -ACAGTACAGACAAAGTCCCA--GAGCT--CAG-TCT-GTGTA-CTCTC-  83

seq1  TGCTCCATCTACACCTTCCTTCCAGAGGTGACAAAGTCCCTGACTTTTTG  150
      ||||||||||||||||  ||  |||| |||||||||| ||||||||||||
seq2  TGCTCCATCTACACCT--CT--CAGA-GTGACAAAGT-CCTGACTTTTTG  127

seq1  GTTAATCATATTCTTGCTTGCTTTTCTTTATCTATTCAAAATTATCAGTG  200
      ||| ||||||||| ||| ||||||||||| ||||||||||||||||||||
seq2  GTT-ATCATATTCCTGC-TGCTTTTCTTTTTCTATTCAAAATTATCAGTG  175

seq1  TATGCATCCCTAAACAGTATGTCTGTCTTGCCAGTTGTGACTTGACTGAG  250
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  TATGCAT-CCTTAACAGTATGTCTGTCTTGCCAGTTGTGACTTGACTGAG  224

seq1  TGGGATGACATCTCATGTTCTTGTTCATCTTGCTTCTCTCTTTCACTGAT  300
      ||||||||||||||||||   |||||||| ||||||||||||||||||||
seq2  TGGGATGACATCTCATGT--CTGTTCATC-TGCTTCTCTCTTTCACTGAT  271

seq1  CATGTGTATGAGAACTGTCTATAGTATTGACTGTAGAAATTATATGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATGAGAACTGTCTATAGTATTGACTGTAGAAATTATATGTTCA  321

seq1  TATTCACTATTGTAGGTATAGTATTATCTTTCCTTCCTTTCCCAATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTATTGTAGGTATAGTATTATCTTTCCTTCCTTTCCCAATATAT  371

seq1  AGATGTCTCAATTTTTAAATATGACAAGAAATTGTGC-AATATATATTTC  449
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGATGTCTCAATTTTTAAATATGACAAGAAATTGTGCAAATATATATTTC  421

seq1  CACTCATAGATTTGGGGATATCATATGCATAAGGTTCCTTAGGACCCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATAGATTTGGGGATATCATATGCATAAGGTTCCTTAGGACCCATG  471

seq1  AATTAACCATACAGACATGTCATGGATTAAACATGTTTTCACATGATCGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACCATACAGACATGTCATGGATTAAACATGTTTTCACATGATCGG  521

seq1  TATATGTTCAAAGTCACATGAGCATGCTAAGGCAAGTTTACACCATTACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTCAAAGTCACATGAGCATGCTAAGGCAAGTTTACACCATTACC  571

seq1  ACCATGTGACTCTCCAAGGTATGCAGCCCCTGCCTTTAACACTGTGAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGACTCTCCAAGGTATGCAGCCCCTGCCTTTAACACTGTGAAAT  621

seq1  GTTAACACTCTTAATTTAATCAATGGCCTAAAAATCCAGTATAGGTGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACACTCTTAATTTAATCAATGGCCTAAAAATCCAGTATAGGTGATA  671

seq1  TCATTTGAATAAACATTTCCTCACTTCTAGGAGGGAAAGGGGGAACTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAATAAACATTTCCTCACTTCTAGGAGGGAAAGGGGGAACTTCT  721

seq1  TCCTTGACCATCAGAAACCTATGAGAAAAGATAAAGAATGGGATTACTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACCATCAGAAACCTATGAGAAAAGATAAAGAATGGGATTACTAA  771

seq1  ACCACATTAGAACTGCAGTGGTGCAGACCAGAAAACACTTGAAATGCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTAGAACTGCAGTGGTGCAGACCAGAAAACACTTGAAATGCTTC  821

seq1  ATCTTTATCATCACATATGTGTGCAGTTCTTCAAACAATTGCATAAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCATCACATATGTGTGCAGTTCTTCAAACAATTGCATAAAACA  871

seq1  ATTGTCAAATGTAGCTGATTAAAACAAACAGCCAGTGATTAGTTTCCACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAAATGTAGCTGATTAAAACAAACAGCCAGTGATTAGTTTCCACA  921

seq1  CTGAGAAAATGGAACTCGTTTAGCTTCTTGCCTGCCTCATCTGCTCTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAATGGAACTCGTTTAGCTTCTTGCCTGCCTCATCTGCTCTTTT  971

seq1  ACAATGACCCCCACATCAGCAAAGTTGTCACCATGCACCTGCAGTCCATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACCCCCACATCAGCAAAGTTGTCACCATGCACCTGCAGTCCATG  1021

seq1  TTAGAAAGGATATTTTCATGGAATTC  1075
      ||||||||||||||||||||||||||
seq2  TTAGAAAGGATATTTTCATGGAATTC  1047

seq1: chr9_52303519_52304555
seq2: B6Ng01-048H18.g_69_1087

seq1  GAATTCTCCGGCTTGTCATGTTTTAATAAGAGCTCATCGGGTCCAGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGGCTTGTCATGTTTTAATAAGAGCTCATCGGGTCCAGCTTT  50

seq1  GTTGGAAAGTCAGGCTGTTGAATGTTCCTGGGAGCTTGGTGGTGTTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAAGTCAGGCTGTTGAATGTTCCTGGGAGCTTGGTGGTGTTGAGG  100

seq1  GAGGAACCTGCTAGCCCAGCAGGTAGCTCAGGTGATGTGCAAAGATGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACCTGCTAGCCCAGCAGGTAGCTCAGGTGATGTGCAAAGATGGGC  150

seq1  GAACACAGCTCCTCCTTCTCAGGGGCATCAGAGAGAAAACAGTGGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGCTCCTCCTTCTCAGGGGCATCAGAGAGAAAACAGTGGAGAAA  200

seq1  GGCTGAGGTAGTAGATTGACAGCTCTGAGTCCTCAGCTGGTAATTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGTAGTAGATTGACAGCTCTGAGTCCTCAGCTGGTAATTTAGAG  250

seq1  TAAGAGAGAGGGGGCGCTAAAGAGCAAGAGAGCATGAGAGCTGGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGAGGGGGCGCTAAAGAGCAAGAGAGCATGAGAGCTGGAGAGAG  300

seq1  CGAGAGCAAGAGGGAGAGAGAAAGAACGAAGTATTTTTTGGCATCTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCAAGAGGGAGAGAGAAAGAACGAAGTATTTTTTGGCATCTAAAT  350

seq1  ATCAGGTCTTATTCTATTTGGTGGGGAATAAATCAGGAAAAGGCCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTCTTATTCTATTTGGTGGGGAATAAATCAGGAAAAGGCCATCAC  400

seq1  AAAAGTATTTTTAAATACCCAAGAAGACACAAAAAGTAAAGAAAACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATTTTTAAATACCCAAGAAGACACAAAAAGTAAAGAAAACAGCC  450

seq1  TAAAAAGAGATACCCCCAAATAGCATTTATAGCTGAGTCTTGGAGTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGATACCCCCAAATAGCATTTATAGCTGAGTCTTGGAGTCTGG  500

seq1  GTACAATTTAAAGTTTGTTCTCTATGTATGTTTTTCATCTGATATATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTTAAAGTTTGTTCTCTATGTATGTTTTTCATCTGATATATTCT  550

seq1  CAAATTACAGTGTAAGTTCAGTTGAAGGGGAGAGGGTCTTTCATTTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTACAGTGTAAGTTCAGTTGAAGGGGAGAGGGTCTTTCATTTGGAT  600

seq1  AATAAAACAGATGGTTAAGTGCCTTGGAAACCAAGTCCCATGGCTTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAGATGGTTAAGTGCCTTGGAAACCAAGTCCCATGGCTTCACA  650

seq1  ACTCACTAGCTGCGTGGCCTTAAGCCAAGTTCCATGCCCGCTTGGAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTAGCTGCGTGGCCTTAAGCCAAGTTCCATGCCCGCTTGGAACAT  700

seq1  GAGTATATTTATTTATATAGCTCACTCCAAGGCAACTATTATACTGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATATTTATTTATATAGCTCACTCCAAGGCAACTATTATACTGGTAT  750

seq1  AATTATTATTATACACTGTACCTGCAGAAGTATTATTTCGTTCTTAGT-G  799
      |||||||||||||||||||||||||||||||||||||||| ||| ||| |
seq2  AATTATTATTATACACTGTACCTGCAGAAGTATTATTTCG-TCTAAGTGG  799

seq1  GTACTGGTTA-GTTTTCGGCTTTTTAAGTGAACTAGCTACTTTGTTTTAT  848
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  GTACTGGTTAGGTTTTCGGC-TTTTAAGTGAACTAGCTACTTTGTTTTAT  848

seq1  TATAAGTTGCTAAAAATAATTCCAAGTTGGATATTAAGTGTTTTTATATT  898
      ||||||||||||||||||||||||||| ||||| |||||| ||||||| |
seq2  TATAAGTTGCTAAAAATAATTCCAAGTGGGATA-TAAGTG-TTTTATAAT  896

seq1  TGTTTGTTGGCTTAAATATCTCCATGCCTTTAACTACATTTGCTGCTGTT  948
       | |||||||||||| ||||| |||||  |||||| || ||||||||| |
seq2  GGGTTGTTGGCTTAAGTATCTGCATGC--TTAACT-CA-TTGCTGCTG-T  941

seq1  CTCAGTCACAGAACCATGGCAGTTAATGGTAGTGTATAAGCCGAGAAATT  998
      ||||||| ||||| |||||||| |||||| ||||||| ||| ||| ||||
seq2  CTCAGTC-CAGAA-CATGGCAG-TAATGG-AGTGTAT-AGCGGAG-AATT  985

seq1  TAGAGAAGTCAATAGGTATTGGTAGCTAGGACAT-GACAA  1037
      ||||| |||| ||||| ||  ||||||| ||||| |||||
seq2  TAGAG-AGTC-ATAGG-AT--GTAGCTA-GACATGGACAA  1019