BAC Information

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BAC

Clone NameB6Ng01-048H20
Chromosome9 (Build37)3 (Build37)
Map Location 58,752,980 - 58,753,52295,809,298 - 95,809,861
singlet/doubletsingletsinglet
Overlap geneNeo1
Upstream geneUbl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4
Downstream geneLOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048H20.bB6Ng01-048H20.g
ACCDH873032DH873033
length226558
definitionDH873032|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H20, 5' end.DH873033|Mus musculus domesticus DNA, BAC clone: B6Ng01-048H20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,752,980 - 58,753,522)(95,809,298 - 95,809,861)
sequence
aactcaggtcttcacgcatgctaggcaagcactttaccaagtaagacaca
tttccagccttgctcatttttgtttggatttgttgtttgtttgtttgttt
gtttgtttgttttttaaagacaagtctaactatgtagctcaagctaacct
caaactcattctgtaacccaaataggcaccttgcaatcctcttgtctcag
cctcccaagtagctgggattataggc
gaattctagatggttgtgagatgccaggtgggtctaggagccgaacctgg
gttcttgcaagcgcagcagtgctcttactgctcggctgtctcccgaggcc
ttaactgtttcatttgtttcctataagaattctatattgttcttatgatg
aaaagttgtctttagtttaaagatgttctagtgtacacagagtcaggaga
catccttgggctgagtcctggttaaagtcgacttcatcctcataagcgtc
tacttttgcgttaggcacaagccctcacaggcacagcgcacgctaacaga
acttcacacagtcagtactaaggaaaagctggccagtggcaggaagaaaa
caaactttttgcacaaagaaaaatctctacaaagccaacgtgatcctgat
gctttcaaagggatcctgaaccgacccaagttgcaggagactggtgtatg
ggttcctttctctttgacatgcaaattacgtcatagtatctaattttctg
taataattcagggatgaacccacttgtggtagaggagaagggcaagtgct
atgttact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58752980_58753522
seq2: B6Ng01-048H20.b_128_275 (reverse)

seq1  GCCTTTAATCCCAGC-ACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTT  49
      |||| |||||||||| ||||||||||| ||| || | ||||| |   || 
seq2  GCCTATAATCCCAGCTACTTGGGAGGCTGAGACAAGAGGATTGCAAGGT-  49

seq1  CCAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATAC  99
          |||    |||  |||||| ||||||  |||  |||  | |||| | 
seq2  ----GCCTATTTGGGTTACAGAATGAGTTTGAGGTTAGCTTGAGCTACAT  95

seq1  AGAGAAACCCTGTCTCGAAAATAACAAAACCAAAACCAAAAACAAACAAA  149
      ||  | | | |||||  |||| ||||||  ||||   | |||||||||||
seq2  AGTTAGA-CTTGTCTTTAAAA-AACAAA--CAAACAAACAAACAAACAAA  141

seq1  CAAACAAAAGATGACAAAAGAAAATGGCTTTCTATGTTACAGGTGAGAAT  199
      | ||||||                                          
seq2  C-AACAAA------------------------------------------  148

seq1  GTCTAATGTAATAGCTAAGTAGGAAAATGATCAAATCAAGCATTCCTTCA  249
                                                        
seq2  --------------------------------------------------  148

seq1  AATCGCTGCTTCCTAAAACATTCGAGTTTTAATATAAAATGGAAGAGCCT  299
                                                        
seq2  --------------------------------------------------  148

seq1  AGTGAAATGAACTCCTAAGGGAAAGTAAAATTTTCTCTTATTGGTCAGTA  349
                                                        
seq2  --------------------------------------------------  148

seq1  AGCTGAAAGTAAAGCAAAAAGATATTCTTAAATGGAAACACTGAGTGTGG  399
                                                        
seq2  --------------------------------------------------  148

seq1  TGGCACATGCCTTCAATCCCAACACTCCAGAGGCAGGCGGGACGGACTTG  449
                                                        
seq2  --------------------------------------------------  148

seq1  GATGTCATGTTCGTCTATACAGTGAGTGTTAGGCCAGCGAGGGCTACACA  499
                                                        
seq2  --------------------------------------------------  148

seq1  GTGAGACCCCGTGTCAACACGAAGCCAAACAAACAAACAACAAA  543
                                                  
seq2  --------------------------------------------  148

seq1: chr3_95809298_95809861
seq2: B6Ng01-048H20.g_68_625

seq1  GAATTCTAGATGGTTGTGAGATGCCAGGTGGGTCTAGGAGCCGAACCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGATGGTTGTGAGATGCCAGGTGGGTCTAGGAGCCGAACCTGG  50

seq1  GTTCTTGCAAGCGCAGCAGTGCTCTTACTGCTCGGCTGTCTCCCGAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCAAGCGCAGCAGTGCTCTTACTGCTCGGCTGTCTCCCGAGGCC  100

seq1  TTAACTGTTTCATTTGTTTCCTATAAGAATTCTATATTGTTCTTATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTTTCATTTGTTTCCTATAAGAATTCTATATTGTTCTTATGATG  150

seq1  AAAAGTTGTCTTTAGTTTAAAGATGTTCTAGTGTACACAGAGTCAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTCTTTAGTTTAAAGATGTTCTAGTGTACACAGAGTCAGGAGA  200

seq1  CATCCTTGGGCTGAGTCCTGGTTAAAGTCGACTTCATCCTCATAAGCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGGGCTGAGTCCTGGTTAAAGTCGACTTCATCCTCATAAGCGTC  250

seq1  TACTTTTGCGTTAGGCACAAGCCCTCACAGGCACAGCGCACGCTAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGCGTTAGGCACAAGCCCTCACAGGCACAGCGCACGCTAACAGA  300

seq1  ACTTCACACAGTCAGTACTAAGGAAAAGCTGGCCAGTGGCAGGAAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACACAGTCAGTACTAAGGAAAAGCTGGCCAGTGGCAGGAAGAAAA  350

seq1  CAAAC-TTTTGCACAAAG-AAAATCTCTACAAAGCCAACGTGATCCTGAT  398
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAACTTTTTGCACAAAGAAAAATCTCTACAAAGCCAACGTGATCCTGAT  400

seq1  GCTTTCAAAGGGATCCTGAACCGACCCAAGTTGCAGGAGACTGGTGTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAGGGATCCTGAACCGACCCAAGTTGCAGGAGACTGGTGTATG  450

seq1  GGTTCCTTTCTCTTTGACATGCAAATTACGTCATAGTATCCTAATTTTTC  498
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  GGTTCCTTTCTCTTTGACATGCAAATTACGTCATAGTAT-CTAA-TTTTC  498

seq1  TGTAAATAATTCAGGGATTGAACCCACTTGTGGTTAGAGGAGAAGGGCCA  548
      ||| ||||||||||||| ||||||||||||||| ||||||||||||| ||
seq2  TGT-AATAATTCAGGGA-TGAACCCACTTGTGG-TAGAGGAGAAGGG-CA  544

seq1  AGTGTCTAGTGTTACT  564
      |||| ||| |||||||
seq2  AGTG-CTA-TGTTACT  558