BAC Information

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BAC

Clone NameB6Ng01-048J23
Chromosome9 (Build37)
Map Location 108,920,087 - 109,054,413
singlet/doubletdoublet
Overlap genePfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik
Upstream geneIhpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1
Downstream geneFbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048J23.bB6Ng01-048J23.g
ACCDH873127DH873128
length389827
definitionDH873127|Mus musculus domesticus DNA, BAC clone: B6Ng01-048J23, 5' end.DH873128|Mus musculus domesticus DNA, BAC clone: B6Ng01-048J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,920,087 - 108,920,474)(109,053,587 - 109,054,413)
sequence
tctaggtagacttaagaggcagaggcatgcagatctctgtgagttcaagg
ccagactggtctacagagtgagttccaggccaaccagggctacacacaga
gaagccctatctaaaataataaccttataaataataataataataataat
aagcctgttacatgctgtttgggtgccctgttgcatgtttgtttgagaag
cttctccccttctctgaacgctttcggaattctcactgatggtggttttc
agcatttaattatggtttttccttatatggacttggttgtgatttatctt
gcttgccggtcactgctgcatgacaaaacttttcctgggaagacactaca
cactcacatacacactctcacacactccactcaccacac
gaattctttctctgagagtgttgacaggggtttgggctacctcacctcag
gagctaaacagaacatggtgtggcttgcactgagcatagttctcctggga
ccttcctgagctgtttgacttagggtaggaatcatggctagagctgtggc
agcattgttgacctggctgcagcacagctgtgcaggtagataaggttttc
tgagtgctaggggcccatatgatgccctgggagagggatggtggggaccc
taacaccactgggaaagaacacaggattggccatgtctgtggttcttgag
gacattactcttggcttgtctcagcgttatgacaccagattcccactgtg
cagtccctggtggtttatgcaagaatttcttctcttgtgtactctgactt
gctagacagacagctgctgagccattgtaggaaagaaccaggtgaatgct
ggaacctcaatgtgagtttcttgattgtccttcattctctcaactatttt
ctattttaaaaggtaatagagcctaatggagtaaacattaatccattctt
gatgttggttggttctgtttgtctgggagaaggtcttaccctgtagtcct
agctggcctggaactatgtagaccaggctaacctctgactcaacagatct
gcctgcctctgcctcttgagtgccggaactaaaggtatggcccaatatac
ccagccaagttgtttttactttgatagaccatgtctcaatgtttataaac
attgtctcctacagcaaactgaaaatgtaacatagtgaacaagatgatct
tagggttggaggtttttggggttttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108920087_108920474
seq2: B6Ng01-048J23.b_47_441

seq1  GAATTCTCTAGGTAGACTTAAGAGGCAGAGGCAGGCAGATCTCTGTGAGT  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCTCTAGGTAGACTTAAGAGGCAGAGGCATGCAGATCTCTGTGAGT  50

seq1  TCAAGGCCAGACTGGTCTACAGAGTGAGTTCCAGGCCAACCAGGGCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGACTGGTCTACAGAGTGAGTTCCAGGCCAACCAGGGCTACA  100

seq1  CACAGAGAAGCCCTATCTAAAATAATAACCTTATAAATAATAATAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAGCCCTATCTAAAATAATAACCTTATAAATAATAATAATAAT  150

seq1  AATAATAAGCCTGTTACATGCTGTTTGGGTGCCCTGTTGCATGTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAGCCTGTTACATGCTGTTTGGGTGCCCTGTTGCATGTTTGTTT  200

seq1  GAGAAGCTTCTCCCCTTCTCTGAACGCTTTCGGAATTCTCACTGATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTTCTCCCCTTCTCTGAACGCTTTCGGAATTCTCACTGATGGTG  250

seq1  GTTTTCAGCATTTAATTATGGTTTTTCCTTATATGGACTTGGTTGTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGCATTTAATTATGGTTTTTCCTTATATGGACTTGGTTGTGATT  300

seq1  TATCTTGCTTGCCGGTCACTGCTGCATGACAAAACTTTTCCTGGGAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCTTGCCGGTCACTGCTGCATGACAAAACTTTTCCTGGGAAGAC  350

seq1  ACTACACACACACACACACACACACACACA-------CACCACAC  388
      ||||||||| |||| |||||| | ||||||       ||||||||
seq2  ACTACACACTCACATACACACTCTCACACACTCCACTCACCACAC  395

seq1: chr9_109053587_109054413
seq2: B6Ng01-048J23.g_66_892 (reverse)

seq1  CCAAAACCCCAAAAACCTCCAACCCTAAGATCATCTTGTTCACTATGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCCCAAAAACCTCCAACCCTAAGATCATCTTGTTCACTATGTTA  50

seq1  CATTTTCAGTTTGCTGTAGGAGACAATGTTTATAAACATTGAGACATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGTTTGCTGTAGGAGACAATGTTTATAAACATTGAGACATGGT  100

seq1  CTATCAAAGTAAAAACAACTTGGCTGGGTATATTGGGCCATACCTTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAAGTAAAAACAACTTGGCTGGGTATATTGGGCCATACCTTTAGT  150

seq1  TCCGGCACTCAAGAGGCAGAGGCAGGCAGATCTGTTGAGTCAGAGGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCACTCAAGAGGCAGAGGCAGGCAGATCTGTTGAGTCAGAGGTTAG  200

seq1  CCTGGTCTACATAGTTCCAGGCCAGCTAGGACTACAGGGTAAGACCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACATAGTTCCAGGCCAGCTAGGACTACAGGGTAAGACCTTCT  250

seq1  CCCAGACAAACAGAACCAACCAACATCAAGAATGGATTAATGTTTACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACAAACAGAACCAACCAACATCAAGAATGGATTAATGTTTACTCC  300

seq1  ATTAGGCTCTATTACCTTTTAAAATAGAAAATAGTTGAGAGAATGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCTCTATTACCTTTTAAAATAGAAAATAGTTGAGAGAATGAAGGA  350

seq1  CAATCAAGAAACTCACATTGAGGTTCCAGCATTCACCTGGTTCTTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGAAACTCACATTGAGGTTCCAGCATTCACCTGGTTCTTTCCTA  400

seq1  CAATGGCTCAGCAGCTGTCTGTCTAGCAAGTCAGAGTACACAAGAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTCAGCAGCTGTCTGTCTAGCAAGTCAGAGTACACAAGAGAAGA  450

seq1  AATTCTTGCATAAACCACCAGGGACTGCACAGTGGGAATCTGGTGTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGCATAAACCACCAGGGACTGCACAGTGGGAATCTGGTGTCATA  500

seq1  ACGCTGAGACAAGCCAAGAGTAATGTCCTCAAGAACCACAGACATGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGAGACAAGCCAAGAGTAATGTCCTCAAGAACCACAGACATGGCCA  550

seq1  ATCCTGTGTTCTTTCCCAGTGGTGTTAGGGTCCCCACCATCCCTCTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGTTCTTTCCCAGTGGTGTTAGGGTCCCCACCATCCCTCTCCCA  600

seq1  GGGCATCATATGGGCCCCTAGCACTCAGAAAACCTTATCTACCTGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCATATGGGCCCCTAGCACTCAGAAAACCTTATCTACCTGCACAG  650

seq1  CTGTGCTGCAGCCAGGTCAACAATGCTGCCACAGCTCTAGCCATGATTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCAGCCAGGTCAACAATGCTGCCACAGCTCTAGCCATGATTCC  700

seq1  TACCCTAAGTCAAACAGCTCAGGAAGGTCCCAGGAGAACTATGCTCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAAGTCAAACAGCTCAGGAAGGTCCCAGGAGAACTATGCTCAGTG  750

seq1  CAAGCCACACCATGTTCTGTTTAGCTCCTGAGGTGAGGTAGCCCAAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACACCATGTTCTGTTTAGCTCCTGAGGTGAGGTAGCCCAAACCC  800

seq1  CTGTCAACACTCTCAGAGAAAGAATTC  827
      |||||||||||||||||||||||||||
seq2  CTGTCAACACTCTCAGAGAAAGAATTC  827