BAC Information

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BAC

Clone NameB6Ng01-048L16
Chromosome9 (Build37)
Map Location 25,919,894 - 26,020,831
singlet/doubletdoublet
Overlap genenone
Upstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L16.bB6Ng01-048L16.g
ACCDH873202DH873203
length588953
definitionDH873202|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L16, 5' end.DH873203|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,919,894 - 25,920,487)(26,020,266 - 26,020,831)
sequence
ctcaaacatatttataattgctgttttgaaacaatttttcaaaacatttt
gaaaaaactttcatttttgaatagggttcaaacaaagtttaagttcccaa
gcctcactgggtgactgacatcatggatggcagttgagtcatgaatgcag
ggcaaatcactctatcacagttgaatacatcaactaatgacaacaggata
tgtgtatcacacaaaaaaaaaagttcctaagaaagtcccctattcctaaa
tcctgattagtggaaaattgttactgtaacttggcatagatatttatggt
tttcaggtttacaagctctgttataattcatctcagtgtcacagttccgc
tcccaagtctgttctgcatccttgaaagatcaatagtgcttgattacagt
gaatttttgttttctatattggcttggtatttgagttgggttggatctaa
gtggaaattatagcagtattatgcatcacctaagttgcttttgttgagaa
atattacaattagggtgctacttttcagaggagatatattatcttgatta
tttgtgttgtttgtgtttttgtagaggggttaaggtat
gaattccattcatttcatattcttcttttacacatttaactcttttccct
gagtgcattataattttttgtttattgaaaattaatgttcatacactata
ttctgattatagtttccctcctcctactttttccggttcttcttcacatt
cccttccattcagatccactttctgtcttttcttaaaaaacagtcatcta
aataataataatacattgcaaatcaatgaaatatgatgtaattcaataca
atatatcattaagaatttataacaagaaaaagcaaacaaacaagaaccct
cctccccccaaaagcacatatagttgtagaaacacacatccacagagtaa
tcccattagaacacaaaaccagaagccattatatacatgcaaagaacttg
taaagtggggaaaaggcctgattcaacatcatgaggctagggaccaccaa
atatcccattgagttcattctgtattggctacctatggctcgacctactc
ttacaagaggtttgtgtttctactgagaatccaggagctaagaaaatctt
tttatattttcagcatttggtgttcatatttgttcccatctgttacagaa
gaaacctcctctgattgtggatatgcaagacacttatatatgagtataga
aattgtggctttgagaattttttttattgctaggttccttcagcagaaga
gcagtattcagttttcccttagattcctggatcatctagtctcagttctt
ggccaccacagaaacagaaccagctatgtgttctatctcatagaatgtgt
cttatatcaaatcagatattggttggttacttccacgagatttgtgtcac
tattacaccagcacattttaaaggcagatactgttgtagactgaaggttt
aaattttttttgtgtttactttctctgtggtagtatatatagggtctcag
tac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_25919894_25920487
seq2: B6Ng01-048L16.b_47_640

seq1  GAATTCCTCAAACATATTTATAATTGCTGTTTTGAAACAATTTTTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAACATATTTATAATTGCTGTTTTGAAACAATTTTTCAAAA  50

seq1  CATTTTGAAAAAACTTTCATTTTTGAATAGGGTTCAAACAAAGTTTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAAAAACTTTCATTTTTGAATAGGGTTCAAACAAAGTTTAAGT  100

seq1  TCCCAAGCCTCACTGGGTGACTGACATCATGGATGGCAGTTGAGTCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCCTCACTGGGTGACTGACATCATGGATGGCAGTTGAGTCATGA  150

seq1  ATGCAGGGCAAATCACTCTATCACAGTTGAATACATCAACTAATGACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGGCAAATCACTCTATCACAGTTGAATACATCAACTAATGACAAC  200

seq1  AGGATATGTGTATCACACAAAAAAAAAAGTTCCTAAGAAAGTCCCCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGTGTATCACACAAAAAAAAAAGTTCCTAAGAAAGTCCCCTATT  250

seq1  CCTAAATCCTGATTAGTGGAAAATTGTTACTGTAACTTGGCATAGATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCCTGATTAGTGGAAAATTGTTACTGTAACTTGGCATAGATATT  300

seq1  TATGGTTTTCAGGTTTACAAGCTCTGTTATAATTCATCTCAGTGTCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTCAGGTTTACAAGCTCTGTTATAATTCATCTCAGTGTCACAG  350

seq1  TTCCGCTCCCAAGTCTGTTCTGCATCCTTGAAAGATCAATAGTGCTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCTCCCAAGTCTGTTCTGCATCCTTGAAAGATCAATAGTGCTTGAT  400

seq1  TACAGTGAATTTTTGTTTTCTATATTGGCTTGGTATTTGAGTTGGGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGAATTTTTGTTTTCTATATTGGCTTGGTATTTGAGTTGGGTTGG  450

seq1  ATCTAAGTGGAAATTATAGCAGTATTATGCATCACCTAAGTTGCTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTGGAAATTATAGCAGTATTATGCATCACCTAAGTTGCTTTTGT  500

seq1  TGAGAAATATTACAATTAGGGTGCTACTTTTCAGAGGAGATATATTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATATTACAATTAGGGTGCTACTTTTCAGAGGAGATATATTATCT  550

seq1  TGATTATTTGTGTTGTTTGTGTTTTTGTAGAGGGGTTAAGGTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTGTGTTGTTTGTGTTTTTGTAGAGGGGTTAAGGTAT  594

seq1: chr9_26020266_26020831
seq2: B6Ng01-048L16.g_67_632 (reverse)

seq1  ATGCTGAAAATATAAAAAGATTTTCTTAGCTCCTGGATTCTCAGTAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAAATATAAAAAGATTTTCTTAGCTCCTGGATTCTCAGTAGAAA  50

seq1  CACAAACCTCTTGTAAGAGTAGGTCGAGCCATAGGTAGCCAATACAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCTCTTGTAAGAGTAGGTCGAGCCATAGGTAGCCAATACAGAAT  100

seq1  GAACTCAATGGGATATTTGGTGGTCCCTAGCCTCATGATGTTGAATCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAATGGGATATTTGGTGGTCCCTAGCCTCATGATGTTGAATCAGG  150

seq1  CCTTTTCCCCACTTTACAAGTTCTTTGCATGTATATAATGGCTTCTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCCCACTTTACAAGTTCTTTGCATGTATATAATGGCTTCTGGTT  200

seq1  TTGTGTTCTAATGGGATTACTCTGTGGATGTGTGTTTCTACAACTATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCTAATGGGATTACTCTGTGGATGTGTGTTTCTACAACTATATG  250

seq1  TGCTTTTGGGGGGAGGAGGGTTCTTGTTTGTTTGCTTTTTCTTGTTATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGGGGGGAGGAGGGTTCTTGTTTGTTTGCTTTTTCTTGTTATAA  300

seq1  ATTCTTAATGATATATTGTATTGAATTACATCATATTTCATTGATTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAATGATATATTGTATTGAATTACATCATATTTCATTGATTTGCA  350

seq1  ATGTATTATTATTATTTAGATGACTGTTTTTTAAGAAAAGACAGAAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATTATTATTTAGATGACTGTTTTTTAAGAAAAGACAGAAAGTG  400

seq1  GATCTGAATGGAAGGGAATGTGAAGAAGAACCGGAAAAAGTAGGAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAATGGAAGGGAATGTGAAGAAGAACCGGAAAAAGTAGGAGGAGG  450

seq1  GAAACTATAATCAGAATATAGTGTATGAACATTAATTTTCAATAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATAATCAGAATATAGTGTATGAACATTAATTTTCAATAAACAAA  500

seq1  AAATTATAATGCACTCAGGGAAAAGAGTTAAATGTGTAAAAGAAGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAATGCACTCAGGGAAAAGAGTTAAATGTGTAAAAGAAGAATAT  550

seq1  GAAATGAATGGAATTC  566
      ||||||||||||||||
seq2  GAAATGAATGGAATTC  566