BAC Information

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BAC

Clone NameB6Ng01-048O03
Chromosome7 (Build37)9 (Build37)
Map Location 62,438,095 - 62,438,61119,941,239 - 19,942,288
singlet/doubletsingletsinglet
Overlap geneLuzp2
Upstream geneMrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048O03.bB6Ng01-048O03.g
ACCDH873308DH873309
length9511,036
definitionDH873308|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O03, 5' end.DH873309|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,438,095 - 62,438,611)(19,941,239 - 19,942,288)
sequence
gaattcatctggccctgtgatgttttgtttgacagactttttttttttca
agtgaattccattactatttcttttatttttttcttttttttttttatta
gatattttcttcatttacatttcaaatgttatccccagagccccctatag
catccccctgccctgctccccaacccatcatgtcccacttcctggccctg
gcattcccctgtactggtgcatatgatctttgcaataccaagggcctctc
ctcccattgatggccaaccaatccatcctctgctacgtgtgcaactagag
acacagctctgaagttagttcatattgttgttcctcctatagggttgcag
actcctttagctccttgggtactttctctagctccttcaataggggcctt
gtgttccatccaatagatgactgtgagcatccacttctgtatttgccagg
gattggcatagactcacaagagagagctatgtcaaggtcctatcagcaaa
atctttctggcatatacaatagtgtctggttttcatagttgtttatggga
tggatccccaggtggggcagtctctggatggtctttccttctgtcttagc
tctgaactttgtctctgtaactccttccatggatatttttttccacatta
taagaaggaacgaagtatccacactttggtcttccttcttcttgagtttc
atgtgttttgcacactgtatcttgaatattctaagtttctgggctaatat
cagtgagtgtgtatcatgtgagttcttttgagattgggttacctcactca
gggtgatatccttcacatccatccatttgcctaaaatttcatgaattcat
tgttttaatagctgagtagtactccattgtgtaaatgtaccacattttct
gttttcattcctctgctgaggtacatctgggttctttccagcttctggct
a
gaattctcaggatggaagaaataattttatagtatgaggaaataattcct
gtggttgaaaataaaccaaaaaagacaccaataaaatgtataactatgct
tttggtgaacatttcagaacagttaagattaagaagttgggaaggatcac
aataaaagttagagatttccatgccactgaagtgtgtaaattgtagcaca
atcaaattgtgcacctgagagtccacaagactggccaaaacagatgctaa
aagtaagaatgcacagaggttaggattcataatgattttgtaatgcaggg
ggtgacagatggctacaaacctatcataggccattacagtcagaagcata
ctatccatacatgcaaaaagtataaacatggacatctgtgttaggcagct
cacataggagatgactctgctttgagttccaatatcccaaatcatccttg
ggactatagtggagatcaaacaaatgtcagaccaggaaaggttggagaga
aagaaatacatgggggtatggaggtggaagtcagagcacacggccagaat
gatgagcaggtttccaagcactgtgaccatgtagaaggataaaaacagca
caagtaggaaaggctgtacttctacgtttctctgagaggctcatgagatg
gaactgtgagacaactggtagattctgtgcttctgtgttgtttggacacc
tttggagaaaacaaaatttattagaaaatttattgggaggatataattac
actatgatctcagaaataaaaaataatttaaaaagagaaaaaacatttat
tttgagtctaaccttattacaagtaaatgttctcacttggggccatagtt
ttcagtgtatgacaatgtcaaatcatgcacaattctacatatgggttcca
tgttataatctttatttataaatatatcagtgaggagtaaacttaatagc
ttgttaaacagaatatgggctggaggatggcccacagtaagagtgcaact
gctcttctgaacgtgggtgagttcaatccagcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_62438095_62438611
seq2: B6Ng01-048O03.b_129_462

seq1  TCTTTTTTTTTTTTTCATAATGTAAGCAATTCACTGTTCTAGGGTTTAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGACTCAGGATTTTTCTTCTTTTGAGAGAGTTGTGTGATCTCACTTTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTTTCAAAAATTGTCATCATACTACAAGAATATTAACTGAACCAAGCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GATGTTCAATAAAGGAAAGCTGCATTCTTTTTCTATTAGATATTTTCTTC  200
                          |   || ||||| |||||||||||||||||
seq2  --------------------TCTTTTTTTTTTTTATTAGATATTTTCTTC  30

seq1  ATTTACATTTCAAATGCTATCCCTAAAGTCCCCTATACACCCCCCCTGCC  250
      |||||||||||||||| |||||| | || ||||||||    |||||||||
seq2  ATTTACATTTCAAATGTTATCCCCAGAGCCCCCTATAGCATCCCCCTGCC  80

seq1  CTGCTCCCCAACCCACCCACTCCCTCTTCCTGGCCCTGGCATTCCCCTGT  300
      ||||||||||||||| |   |||| |||||||||||||||||||||||||
seq2  CTGCTCCCCAACCCATCATGTCCCACTTCCTGGCCCTGGCATTCCCCTGT  130

seq1  ACTGGGGCATATGATCTTCACAAGACCAAGGGCCTCTCCTCCCATTGATG  350
      ||||| ||||||||||||  ||| ||||||||||||||||||||||||||
seq2  ACTGGTGCATATGATCTTTGCAATACCAAGGGCCTCTCCTCCCATTGATG  180

seq1  GCCGACTAGGCCATCCTCTGCTACATATGCAACTAGAGACACAGCTTTTG  400
      ||| || |  |||||||||||||| | |||||||||||||||||||    
seq2  GCCAACCAATCCATCCTCTGCTACGTGTGCAACTAGAGACACAGCT----  226

seq1  GGGGGTGGGTACTG--GTTAGTTCATATTGTTGTTCCTCATATAGGGTTG  448
                 |||  ||||||||||||||||||||||| ||||||||||
seq2  -----------CTGAAGTTAGTTCATATTGTTGTTCCTCCTATAGGGTTG  265

seq1  CAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGGC  498
      ||||| |||||||||||||||||||||||||||||||||||| | |||||
seq2  CAGACTCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTTCAATAGGGGC  315

seq1  CCTGTGTTCCATCCAATAG  517
      | |||||||||||||||||
seq2  CTTGTGTTCCATCCAATAG  334

seq1: chr9_19941239_19942288
seq2: B6Ng01-048O03.g_68_1103 (reverse)

seq1  AGTTGCTGGGATTTGAACTCA-CCACGTTCAGAAGAGCAGTTGGCACTCT  49
      |||||||||   ||||||||| |||||||||||||||||||| |||||||
seq2  AGTTGCTGG--ATTGAACTCACCCACGTTCAGAAGAGCAGTT-GCACTCT  47

seq1  TAACTGCTGGGCCATCTCTCCAGCCCATGTTCTTGGTTTTAACAAGCTAT  99
      | |||| ||||||||| ||||||||||| ||||    |||||||||||||
seq2  T-ACTG-TGGGCCATC-CTCCAGCCCATATTCT---GTTTAACAAGCTAT  91

seq1  TAAGTTTACTTCCTCACTGATATATTTTTATAAATAAAGATTATAACATG  149
      ||||||||| ||||||||||||||  ||||||||||||||||||||||||
seq2  TAAGTTTAC-TCCTCACTGATATA--TTTATAAATAAAGATTATAACATG  138

seq1  GAAACCCATATGTAGAATTGTGCATGATTTGACATTGTCATGACACTGAA  199
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  G-AACCCATATGTAGAATTGTGCATGATTTGACATTGTCAT-ACACTGAA  186

seq1  AACTATGGACCACAAGTGAGAACATTTTACTTGTAATAA-GTTAGACTTC  248
      |||||||| || |||||||||||| |||||||||||||| ||||||| ||
seq2  AACTATGG-CCCCAAGTGAGAACA-TTTACTTGTAATAAGGTTAGAC-TC  233

seq1  AAAATAAATGTTTTTTCTTCTTTTTAAATTATTTTTTATTTCTGAGATCA  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAATAAATGTTTTTTC-TCTTTTTAAATTATTTTTTATTTCTGAGATCA  282

seq1  TAGTGTAATTATATCCT-CCAATAAATTTTCTAATAAATTTTGTTTTCTC  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGTGTAATTATATCCTCCCAATAAATTTTCTAATAAATTTTGTTTTCTC  332

seq1  CAAAGGTGTCCAAACAACACAGAAGCACAGAATCTACCAGTTGTCTCACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTGTCCAAACAACACAGAAGCACAGAATCTACCAGTTGTCTCACA  382

seq1  GTTCCATCTCATGAGCCTCTCAGAG-AACGTAGAAGTACAGCCTTTCCTA  446
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTCCATCTCATGAGCCTCTCAGAGAAACGTAGAAGTACAGCCTTTCCTA  432

seq1  CTTGTGCTGTTTTTATCCTTCTACATGGTCACAGTGCTTGGAAACCTGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTGTTTTTATCCTTCTACATGGTCACAGTGCTTGGAAACCTGCT  482

seq1  CATCATTCTGGCCGTGTGCTCTGACTTCCACCTCCATACCCCCATGTATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCTGGCCGTGTGCTCTGACTTCCACCTCCATACCCCCATGTATT  532

seq1  TCTTTCTCTCCAACCTTTCCTGGTCTGACATTTGTTTGATCTCCACTATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCCAACCTTTCCTGGTCTGACATTTGTTTGATCTCCACTATA  582

seq1  GTCCCAAGGATGATTTGGGATATTGGAACTCAAAGCAGAGTCATCTCCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGGATGATTTGGGATATTGGAACTCAAAGCAGAGTCATCTCCTA  632

seq1  TGTGAGCTGCCTAACACAGATGTCCATGTTTATACTTTTTGCATGTATGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGCCTAACACAGATGTCCATGTTTATACTTTTTGCATGTATGG  682

seq1  ATAGTATGCTTCTGACTGTAATGGCCTATGATAGGTTTGTAGCCATCTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATGCTTCTGACTGTAATGGCCTATGATAGGTTTGTAGCCATCTGT  732

seq1  CACCCCCTGCATTACAAAATCATTATGAATCCTAACCTCTGTGCATTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTGCATTACAAAATCATTATGAATCCTAACCTCTGTGCATTCTT  782

seq1  ACTTTTAGCATCTGTTTTGGCCAGTCTTGTGGACTCTCAGGTGCACAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGCATCTGTTTTGGCCAGTCTTGTGGACTCTCAGGTGCACAATT  832

seq1  TGATTGTGCTACAATTTACACACTTCAGTGGCATGGAAATCTCTAACTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTGCTACAATTTACACACTTCAGTGGCATGGAAATCTCTAACTTT  882

seq1  TATTGTGATCCTTCCCAACTTCTTAATCTTAACTGTTCTGAAATGTTCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGATCCTTCCCAACTTCTTAATCTTAACTGTTCTGAAATGTTCAC  932

seq1  CAAAAGCATAGTTATACATTTTATTGGTGTCTTTTTTGGTTTATTTTCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCATAGTTATACATTTTATTGGTGTCTTTTTTGGTTTATTTTCAA  982

seq1  CCACAGGAATTATTTCCTCATACTATAAAATTATTTCTTCCATCCTGAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAATTATTTCCTCATACTATAAAATTATTTCTTCCATCCTGAGA  1032

seq1  ATTC  1050
      ||||
seq2  ATTC  1036