BAC Information

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BAC

Clone NameB6Ng01-049A24
Chromosome9 (Build37)
Map Location 58,394,902 - 58,571,160
singlet/doubletdoublet
Overlap geneCd276, Nptn, 2410076I21Rik
Upstream geneMpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik
Downstream geneHcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049A24.bB6Ng01-049A24.g
ACCDH873432DH873433
length9901,000
definitionDH873432|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A24, 5' end.DH873433|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,570,470 - 58,571,160)(58,394,902 - 58,395,901)
sequence
gaattcaattctgagcatccacatcagcctgttcaccagcctggaactac
agctccaaggggtctggctgcgatgggcatatacacacatgtggcacaca
cgcacatgtgcactgtatgtataagttaacaaaaaccttagttaaatcgt
cagcagagtatacacgacactatctacggtgaggatgcagcatgaaatcc
gaacagtctacagtgaactgcactgtgtcctggacagctgtggccccaca
gccccctctccatgcttgtgcagtgaacccagacaccacgggctccactt
taaacagtgcagtgctgatcagtctctgtgtgagcagtccctctgtcagg
aaatcgcctagcacaatgaaagtgatgtgtcagttcccacacatttaaac
acaagaaatacgatttttctcagtaaaaacgtgatcgctcacgtttgtcc
tatataaatgttgtatgtggatcacaaaaatccgtgctatgtaaccgttt
tgtgtcacagacaaaggcttctgggtcagcataggctggtggaagttaag
tttgggaggacttagagtcacaagcagagtttaatcagcagcttaagacc
aggactcagagaggctctgagcagctcgcttaccaacgcagtcaccttta
cctctcccggaaacaagagtagctgctcctgggcagggcccgcatccagc
ttggctctggaatatagaacaagaagcaccggcctccccttggcttgagc
cctgtgtacagagatagttaaggccacggggaatggtaaagtggttcagc
gtgggaaagcaaacatgccttattcaacaggaaggatacaagggagggaa
cgttcgttcattaatgccataaaaaatgggtccaggaaaaccttttacgc
aaaggagaaggactggctgcaatttgattgtgctgagggaaaaggtaaaa
gtactaattgagccaagtccatgacattaaacttgccctg
gaattcctcttttatttccagtggcttcttctgattccagggatcagccc
ccttgcagggaatctacccgatatgcagggaggttgtggctcaacctcaa
gcttgggcttgtgaccagatctgactcagggataaacccttgtccaactc
ccagttcagggatgggatgtgagccaagctgtaaccaatcagagtctttg
ctcagcttttctgcagaaaccctcagtaaagacttcctaactaaggctcc
taggaaggatatggtctgggctgttagcaatcaagtcgtcagttatcagc
aatctaaaggaactgatgcaggggctggggagatggctcggtggtggata
aagtgactgccactttatcaaagcatatcaaacaggatctgagcttagag
ccccagcacccacaccagcggttctcaacccgtgggtcacgacctcatgg
ggggggtcacacatcagatatctacattatgactcctaacagtggcacat
tgcagtaacgaagtagcaatgaaaatcattttatggttcgagggtcacca
caacatgagaaactgtttttaaaggctcgcagcattggggagggttgaga
accactggtcctacagaaaaagcagggggtttgatttctggctttttttt
tacacacacacacacacacacaaacagagccatagaacaagcttgcccct
gtatgaacacactcacatacatagatacacactcacacacacagacacac
actcttaaagcatgcactgcatccaatcacaccctttcaggggggacaca
gaacctgcttcatccattttaaaaaaagctcaacttccaaagaagcccga
tctgaccttgacctctgcccacttcccctccttctctttcttgcacttgc
cctcaatgcagtgagctgcttcagcttctacagcacagatctctttctat
ctcagagggatggtttaccattatagtcgctcatgctgagagcatgtaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58570470_58571160
seq2: B6Ng01-049A24.b_324_1030 (reverse)

seq1  CAGGGCAAGTTTAGTGTCATGAGCTAGGGCCTCATTTGCTACTCTACCCC  50
      ||||||||||||| |||||||  || ||  |||| ||  |||| |  || 
seq2  CAGGGCAAGTTTAATGTCATGGACTTGG--CTCAATTAGTACTTTTACCT  48

seq1  TTTCCCTCAGCCACATCAAACTGCAGCCAGTCCATCTCCTTTGCTGTAAA  100
      |||||||||||   |||||| |||||||||||| ||||||||||   |||
seq2  TTTCCCTCAGCACAATCAAATTGCAGCCAGTCCTTCTCCTTTGCGTAAAA  98

seq1  GGTTCTCCTGGA-CCACTCTTTATGGCATCTGATG-ACAGACGTCCCTTC  148
      |||| ||||||| ||| | |||||||||| | ||| ||  |||| || ||
seq2  GGTTTTCCTGGACCCATTTTTTATGGCAT-TAATGAACGAACGTTCCCTC  147

seq1  CTTGGTATCCTTCCTGTTGATGAAGGCATGTCTGC-TTCCCACGCTGAGC  197
      | | ||||||||||||||||  ||||||||| ||| |||||||||||| |
seq2  CCTTGTATCCTTCCTGTTGAATAAGGCATGTTTGCTTTCCCACGCTGAAC  197

seq1  CACTTTACCATTCCCCGTGGCC-TGACTATCTCTGTACACA-GGCTC-AG  244
      |||||||||||||||||||||| | |||||||||||||||| ||||| ||
seq2  CACTTTACCATTCCCCGTGGCCTTAACTATCTCTGTACACAGGGCTCAAG  247

seq1  CCAATGGGAGGCCGCTGCTTCTTGTTCTATA-TACAGAGCCAAGCTGGAT  293
      |||| ||||||||| |||||||||||||||| | ||||||||||||||||
seq2  CCAAGGGGAGGCCGGTGCTTCTTGTTCTATATTCCAGAGCCAAGCTGGAT  297

seq1  GC-GGCCCTG-CCAGGAGCAGCTACTCTTGTTT-CAGGAGAGGTAAAGGT  340
      || ||||||| |||||||||||||||||||||| | ||||||||||||||
seq2  GCGGGCCCTGCCCAGGAGCAGCTACTCTTGTTTCCGGGAGAGGTAAAGGT  347

seq1  GACTGCGTTGGT-AGCGAGCTGCTCAGAGCCTCTCTGAGTCCTGGTCTT-  388
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  GACTGCGTTGGTAAGCGAGCTGCTCAGAGCCTCTCTGAGTCCTGGTCTTA  397

seq1  AGCTGCTGATTAAACTCTGCTTGTGACTCTAAGTCCT-CCAAACTTAACT  437
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCTGCTGATTAAACTCTGCTTGTGACTCTAAGTCCTCCCAAACTTAACT  447

seq1  TCCACCAGCCTATGCTGA-CCAGAAGCC-TTGTCTGTGACAC-AAACGGT  484
      |||||||||||||||||| ||||||||| ||||||||||||| |||||||
seq2  TCCACCAGCCTATGCTGACCCAGAAGCCTTTGTCTGTGACACAAAACGGT  497

seq1  TACATAGCACGGA-TTTTGTGATCCACATACAACATTTATATAGGAC-AA  532
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TACATAGCACGGATTTTTGTGATCCACATACAACATTTATATAGGACAAA  547

seq1  CGTGAGCGATCACG-TTTTACTGAGAAAAATCGTATTTCTTGTGTTTAAA  581
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CGTGAGCGATCACGTTTTTACTGAGAAAAATCGTATTTCTTGTGTTTAAA  597

seq1  TGTGTGGGAACTGACACATCACTTTCATTGTGCTAGGCGATTTCCTGACA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGAACTGACACATCACTTTCATTGTGCTAGGCGATTTCCTGACA  647

seq1  GAGGGACTGCTCACACAGAGACTGATCAGCACTGCACTGTTTAAAGTGGA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACTGCTCACACAGAGACTGATCAGCACTGCACTGTTTAAAGTGGA  697

seq1  GCCCGTGGTG  691
      ||||||||||
seq2  GCCCGTGGTG  707

seq1: chr9_58394902_58395901
seq2: B6Ng01-049A24.g_64_1063

seq1  GAATTCCTCTTTTATTTCCAGTGGCTTCTTCTGATTCCAGGGATCAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTTATTTCCAGTGGCTTCTTCTGATTCCAGGGATCAGCCC  50

seq1  CCTTGCAGGGAATCTACCCGATATGCAGGGAGGTTGTGGCTCAACCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGGGAATCTACCCGATATGCAGGGAGGTTGTGGCTCAACCTCAA  100

seq1  GCTTGGGCTTGTGACCAGATCTGACTCAGGGATAAACCCTTGTCCAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCTTGTGACCAGATCTGACTCAGGGATAAACCCTTGTCCAACTC  150

seq1  CCAGTTCAGGGATGGGATGTGAGCCAAGCTGTAACCAATCAGAGTCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCAGGGATGGGATGTGAGCCAAGCTGTAACCAATCAGAGTCTTTG  200

seq1  CTCAGCTTTTCTGCAGAAACCCTCAGTAAAGACTTCCTAACTAAGGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTTTCTGCAGAAACCCTCAGTAAAGACTTCCTAACTAAGGCTCC  250

seq1  TAGGAAGGATATGGTCTGGGCTGTTAGCAATCAAGTCGTCAGTTATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGATATGGTCTGGGCTGTTAGCAATCAAGTCGTCAGTTATCAGC  300

seq1  AATCTAAAGGAACTGATGCAGGGGCTGGGGAGATGGCTCGGTGGTGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAGGAACTGATGCAGGGGCTGGGGAGATGGCTCGGTGGTGGATA  350

seq1  AAGTGACTGCCACTTTATCAAAGCATATCAAACAGGATCTGAGCTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGCCACTTTATCAAAGCATATCAAACAGGATCTGAGCTTAGAG  400

seq1  CCCCAGCACCCACACCAGCGGTTCTCAACCCGTGGGTCACGACCTCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACCCACACCAGCGGTTCTCAACCCGTGGGTCACGACCTCATGG  450

seq1  GGGGGGTCACACATCAGATATCTACATTATGACTCCTAACAGTGGCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTCACACATCAGATATCTACATTATGACTCCTAACAGTGGCACAT  500

seq1  TGCAGTAACGAAGTAGCAATGAAAATCATTTTATGG-TCGAGGGTCACCA  549
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCAGTAACGAAGTAGCAATGAAAATCATTTTATGGTTCGAGGGTCACCA  550

seq1  CAACATGAGAAACTG-TATTAAAGGCTCGCAGCATT-GGGAGGGTTGAGA  597
      ||||||||||||||| | |||||||||||||||||| |||||||||||||
seq2  CAACATGAGAAACTGTTTTTAAAGGCTCGCAGCATTGGGGAGGGTTGAGA  600

seq1  ACCACT-GTCCTACAG-AAAAGCAGGGTGTTTGACTTCTGGC-TTCTATT  644
      |||||| ||||||||| |||||||||| |||||| ||||||| || | ||
seq2  ACCACTGGTCCTACAGAAAAAGCAGGGGGTTTGATTTCTGGCTTTTTTTT  650

seq1  TACACACACACACACACACACACACAGAGCCATAG-ACAAGCTTGCCCCT  693
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  TACACACACACACACACACACAAACAGAGCCATAGAACAAGCTTGCCCCT  700

seq1  GTATGAACACACTCACATACATAGATACACACTCACACACACAGACACAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACACACTCACATACATAGATACACACTCACACACACAGACACAC  750

seq1  ACTCATAAAGCATGCACTGCATCCAATCACACCCTTCCAGGGGGGACCAC  793
      |||| ||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ACTCTTAAAGCATGCACTGCATCCAATCACACCCTTTCAGGGGGGA-CAC  799

seq1  AG-ACCTGC-TCATCCATTTGAATAACAGCTCAGC-TCCAAGGAAGCCCG  840
      || |||||| |||||||||| || || |||||| | ||||| ||||||||
seq2  AGAACCTGCTTCATCCATTTTAAAAAAAGCTCAACTTCCAAAGAAGCCCG  849

seq1  ATCTGACC-TGA-CTCTGCCCACTTCCCCTCCTCTCCTTCCTTGCACTTG  888
      |||||||| ||| ||||||||||||||||||||   ||| ||||||||||
seq2  ATCTGACCTTGACCTCTGCCCACTTCCCCTCCTTCTCTTTCTTGCACTTG  899

seq1  CCCCTCAATGCAGTGAGCTGCTTCCAGCTTCTACAGCACAAGATCCTCCT  938
       |||||||||||||||||||||| ||||||||||||||| |||||   ||
seq2  -CCCTCAATGCAGTGAGCTGCTT-CAGCTTCTACAGCAC-AGATC--TCT  944

seq1  TCCTATCTCAGAAGGGATGGTTTTTACCATTATAGTCGCTCATGCTGAGA  988
      | ||||||||| ||||||||  ||||||||||||||||||||||||||||
seq2  TTCTATCTCAG-AGGGATGG--TTTACCATTATAGTCGCTCATGCTGAGA  991

seq1  AGGCATGGTAAA  1000
        |||| |||||
seq2  --GCAT-GTAAA  1000