BAC Information

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BAC

Clone NameB6Ng01-049J19
Chromosome9 (Build37)
Map Location 36,639,892 - 36,640,587
singlet/doubletsinglet
Overlap geneLOC627681, Fez1
Upstream gene9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24
Downstream genePknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049J19.bB6Ng01-049J19.g
ACCDH873825DH873826
length6961,054
definitionDH873825|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J19, 5' end.DH873826|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcgaccccccccccccccacacacacacacacccgcccccaggact
ggggctagtccagactaagatcgcctttcccaccaccgcacctgagcggg
tcctggaggaaggaatcggatcccagggctcagccagacatccccaacca
ccgactagaggtggcccggtgcagcacaacgtcagcgggcaagccagcca
gcgagcgctcccccgctgctccggctgcgcctggtccccgcgctcgtgcc
cgggctcccggaggcgcgcccgcactcgggaacccgcctaacgggcgcgc
ccagggcctgaacgtcatcctgtcgtgaacactcatagcttccttagagc
acgtggacctacctttattaatatttatgaattgccgttcctcccttctt
tgatactggcccttctgcttcccacatgaatattcagaagctccgagatg
ggggcgtgcaatcgctaccaatatggattcttcagatggcccaacactag
gttttgtataaaaatgcaggcaaatggagtagatgggcaggcagatactg
acagacacactcaaagagcctctggcactttttggactgcccttcctatt
ctattaggggttgtagtggacaagccaagaggtgcgccttactccaaagt
cgttcatagcttcaaggtgagggggctggatggtgggaatattttt
gaattctgtggactgtatcctgtgtattctgtatggttttttgttgtttt
tgtttttgtttttttgctaatatccacttattagtgagtacataccatgc
atgtctgagttacctcactcagaatgatattttctcgttccatccatttg
cctgcaaaagtaaggatgtccttgttcttaatagctgagtagaattctgt
tgtgaaaatgaatcacattttctgtatccattctcctgtcatgggacatc
taggttgtttccagattttggctatcacaaataaggccactatgaacata
gtggaacacgtgccctgagggcctgcaaaaagaatgcaaacaggcaacct
caggaaatagaaggttggggggggacccccagagtccacaagagacctgg
gaggtgagagactcccaagacttacagggagggacctttgagaaatgcct
gacagtagggaaagggaacttacagagcccacctccagcaagaagacagg
gcatcaagtgagggatggggttgccatcccagtcacaactctgacccaca
attatttctgtctgaaagaactacagggatggaaataaagaggagcctga
ggaaaagaaggtctagtgacaggcccaaagtgggatccaagtcaagggga
ggttccaaggcctgacactattactgaggctctggagcactcacaaaaag
ggatctatcatgaccgccctccaaaaaacccaagcagcagcttgaagagt
cagtgcagatatttgcacccaaccaatgggcagaagcagctgacccctgt
tgttgaattagggaaggctgaaagaagcttagtagaaggtgatcctatag
aaggaccagtagtcttaagtattctggaccctcaagatctttcaacactg
gatcacaaacagcatacacagctgatatgaggccccaacacacatactgt
agaggacgttcaggtctatgttcattcaaaaattattgcaccttaacctt
caaaaaacgaagtcccaaggagttagaggtctataggcgttgtaggtgtg
gagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36639892_36640587
seq2: B6Ng01-049J19.b_41_736 (reverse)

seq1  AAAATTATTCCCACCATCCAGCCCCCTCACCTTGGAGCTATGAACGACTT  50
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAATATTCCCACCATCCAGCCCCCTCACCTTGAAGCTATGAACGACTT  50

seq1  TGGAGTAAGGCGCACCTCTTGGCTTGTCCACTACAACCCCTAATAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAGGCGCACCTCTTGGCTTGTCCACTACAACCCCTAATAGAATA  100

seq1  GGAAGGGCAGTCCAAAAAGTGCCAGAGGCTCTTTGAGTGTGTCTGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCAGTCCAAAAAGTGCCAGAGGCTCTTTGAGTGTGTCTGTCAGT  150

seq1  ATCTGCCTGCCCATCTACTCCATTTGCCTGCATTTTTATACAAAACCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCCATCTACTCCATTTGCCTGCATTTTTATACAAAACCTAG  200

seq1  TGTTGGGCCATCTGAAGAATCCATATTGGTAGCGATTGCACGCCCCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCCATCTGAAGAATCCATATTGGTAGCGATTGCACGCCCCCATC  250

seq1  TCGGAGCTTCTGAATATTCATGTGGGAAGCAGAAGGGCCAGTATCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGCTTCTGAATATTCATGTGGGAAGCAGAAGGGCCAGTATCAAAGA  300

seq1  AGGGAGGAACGGCAATTCATAAATATTAATAAAGGTAGGTCCACGTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAACGGCAATTCATAAATATTAATAAAGGTAGGTCCACGTGCTC  350

seq1  TAAGGAAGCTATGAGTGTTCACGACAGGATGACGTTCAGGCCCTGGGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGCTATGAGTGTTCACGACAGGATGACGTTCAGGCCCTGGGCGC  400

seq1  GCCCGTTAGGCGGGTTCCCGAGTGCGGGCGCGCCTCCGGGAGCCCGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTAGGCGGGTTCCCGAGTGCGGGCGCGCCTCCGGGAGCCCGGGCA  450

seq1  CGAGCGCGGGGACCAGGCGCAGCCGGAGCAGCGGGGGAGCGCTCGCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCGCGGGGACCAGGCGCAGCCGGAGCAGCGGGGGAGCGCTCGCTGGC  500

seq1  TGGCTTGCCCGCTGACGTTGTGCTGCACCGGGCCACCTCTAGTCGGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCCCGCTGACGTTGTGCTGCACCGGGCCACCTCTAGTCGGTGGT  550

seq1  TGGGGATGTCTGGCTGAGCCCTGGGATCCGATTCCTTCCTCCAGGACCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGTCTGGCTGAGCCCTGGGATCCGATTCCTTCCTCCAGGACCCG  600

seq1  CTCAGGTGCGGTGGTGGGAAAGGCGATCTTAGTCTGGACTAGCCCCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGCGGTGGTGGGAAAGGCGATCTTAGTCTGGACTAGCCCCAGTC  650

seq1  CTGGGGGCGGGTGTGTGTGTGTGTGGGGGGGGGGGGGGTCGAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCGGGTGTGTGTGTGTGTGGGGGGGGGGGGGGTCGAATTC  696