BAC Information

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BAC

Clone NameB6Ng01-049M07
Chromosome9 (Build37)
Map Location 110,066,654 - 110,217,947
singlet/doubletdoublet
Overlap geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103
Upstream geneFbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30
Downstream geneScap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049M07.bB6Ng01-049M07.g
ACCDH873936DH873937
length956984
definitionDH873936|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M07, 5' end.DH873937|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,066,654 - 110,067,603)(110,216,953 - 110,217,947)
sequence
gaattcaactaaggtcctctggaagagtagtcagtattcttaaccactga
gccaattctacagccccaagaattttcttaaaaggtattccttcattctt
taatatcaaagatattgttaatatttaatgtttgtattaattttgatggt
taatgtggctgaacctataagctagcaatggagactgaagggctaaaggc
tgggtatgacagaaaacaaatacctggtagtagtaatgacaagaaggcta
agtttttgagcagtgggcagcatctatttagaattctttttaactaattc
aggcaatttttggcttgattcagttttattgacagtgatgagagaaaggt
gtgtttttaaagcactattactgtgtgtgtgtataatgtgtgtaagggtg
ggtgcactcatgccatgcacgtgtagcggagacaagggacacttggaaaa
gtcaggtctcctacttgtgcatgagttctaggatgtgaactctgtcaggc
ttttgtggcaacttctttttatccatgattctagaccataatttatttta
aaaaaaatttaataaatatttgtaatatatatcccttagtgcttgaaata
gtctatctaatcaaagagacttggctctaatttgtttactttgtttaatt
tgctttatagctatgacacttgggtccacagtaatgatgttgatgctgaa
attgaagatgcaccaattccaaaaagcccctggaaaggtaattggatatg
taaaaaaagaagttactcttggctaggcaaagtggtgcaaaccctttaac
cccagcactaggaggcagaagctgcagatctctgaattcaagccagcatg
gttctacatctcagttccaagacaacagcatgtagaggagtccctgttgt
agaatgtgttgactaggcacactttgatgcaagacttagtgtatgttaaa
atactc
gaattcattatcccattgtgtctgcctcccgagtgctaggattacaggca
tgtaccaccatgcccagctctacaaatgtttatctgggacaaagtgacac
caagggaggctggagaaggcaaagaactgtatgactgtctttggccatct
ggaaaaacacacacacacacacacacacacacaagtaatttttactttac
tccaattcaagtcttttctatggcctaccaggtactaaggtaaaatttag
gggctacaaaaactgaacaagccttgagtccctgaagagacattataaag
atctgtcacggtggtccatacctatagtcccaactaccatagaaacagga
gaatagaaagctggaggccagcatggggaaggcagtctcaatccagaagc
tgaggcccctggatgaacaagtcagaatggcaggcgagagaggcctcccc
agcacatcctgagctgcaagaggaagttgagcagcatccaagcatcttgg
tgaggggcgtggcctatgggttgctggaatacaggcagaattgacagatc
tctgacacatggtgacccacccacccccaccttccttggggggatgttgc
aagctgtcatttcccagcagcgtgaagaggagtggagcacagtgcccaga
gcaaccgcctacacacacacacacacacacacacacacacacactgggat
caggtataacccgccccctgcagtcaatgttaagaccaagaccgtggagc
taggggagtaagtcacacagagacattctagccatggcaaaggggtatat
ctgaaaaggtagggcggtgggggcagcttttgtctcggacctcctttgtg
aagagaagactagcagtcattaggggctgatgttcagaaggctgagagca
cagcatagacagttctcagacggacacttctcttgctgttgtaagactca
cacgaagatttaagctgcaggtcatttttccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110066654_110067603
seq2: B6Ng01-049M07.b_47_1002

seq1  GAATTCAACTAAGGTCCTCTGGAAGAGTAGTCAGTATTCTTAACCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAAGGTCCTCTGGAAGAGTAGTCAGTATTCTTAACCACTGA  50

seq1  GCCAATTCTACAGCCCCAAGAATTTTCTTAAAAGGTATTCCTTCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTCTACAGCCCCAAGAATTTTCTTAAAAGGTATTCCTTCATTCTT  100

seq1  TAATATCAAAGATATTGTTAATATTTAATGTTTGTATTAATTTTGATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCAAAGATATTGTTAATATTTAATGTTTGTATTAATTTTGATGGT  150

seq1  TAATGTGGCTGAACCTATAAGCTAGCAATGGAGACTGAAGGGCTAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGGCTGAACCTATAAGCTAGCAATGGAGACTGAAGGGCTAAAGGC  200

seq1  TGGGTATGACAGAAAACAAATACCTGGTAGTAGTAATGACAAGAAGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGACAGAAAACAAATACCTGGTAGTAGTAATGACAAGAAGGCTA  250

seq1  AGTTTTTGAGCAGTGGGCAGCATCTATTTAGAATTCTTTTTAACTAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGAGCAGTGGGCAGCATCTATTTAGAATTCTTTTTAACTAATTC  300

seq1  AGGCAATTTTTGGCTTGATTCAGTTTTATTGACAGTGATGAGAGAAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATTTTTGGCTTGATTCAGTTTTATTGACAGTGATGAGAGAAAGGT  350

seq1  GTGTTTTTAAAGCACTATTACTGTGTGTGTGTATAATGTGTGTAAGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTAAAGCACTATTACTGTGTGTGTGTATAATGTGTGTAAGGGTG  400

seq1  GGTGCACTCATGCCATGCACGTGTAGCGGAGACAAGGGACACTTGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACTCATGCCATGCACGTGTAGCGGAGACAAGGGACACTTGGAAAA  450

seq1  GTCAGGTCTCCTACTTGTGCATGAGTTCTAGGATGTGAACTCTGTCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTCTCCTACTTGTGCATGAGTTCTAGGATGTGAACTCTGTCAGGC  500

seq1  TTTTGTGGCAACTTC-TTTTATCCATGATTCTAGACCATAATTTATTTT-  548
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  TTTTGTGGCAACTTCTTTTTATCCATGATTCTAGACCATAATTTATTTTA  550

seq1  AAAAAAATTTAAT-AATATTTGTAATATATAT-CCTTAGTGCTTG-AATA  595
      ||||||||||||| |||||||||||||||||| |||||||||||| ||||
seq2  AAAAAAATTTAATAAATATTTGTAATATATATCCCTTAGTGCTTGAAATA  600

seq1  GTCTATCTAATC-AAGAGACTTGGCTCTAATTTGTTTAC-TTGTTTAA-T  642
      |||||||||||| |||||||||||||||||||||||||| |||||||| |
seq2  GTCTATCTAATCAAAGAGACTTGGCTCTAATTTGTTTACTTTGTTTAATT  650

seq1  TGCTTTATAGCTATGACACTTGGGTCCACAGTAATGATGTTGATGCTGAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATAGCTATGACACTTGGGTCCACAGTAATGATGTTGATGCTGAA  700

seq1  ATTGAAGATGCACCAATCCCAGAAAAGCCCTGG-AAGGTAA-TGGATATG  740
      ||||||||||||||||| ||| |||  |||||| ||||||| ||||||||
seq2  ATTGAAGATGCACCAATTCCAAAAAGCCCCTGGAAAGGTAATTGGATATG  750

seq1  TAAAAAAAGAAGTTACTCTTGGCTAGGCAAAGTGGTGCAAA-CCTTTAAC  789
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAAAAAAGAAGTTACTCTTGGCTAGGCAAAGTGGTGCAAACCCTTTAAC  800

seq1  CCCAGCACTAGGAGGCAGAAGCTGCAGATCTCTGAATTCAAGGCCAGCAT  839
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCAGCACTAGGAGGCAGAAGCTGCAGATCTCTGAATTCAA-GCCAGCAT  849

seq1  GG-TCTACATACTCAGTTCCAAGACAACAGCCATGTAGA-GAGTCCCTGT  887
      || ||||||| ||||||||||||||||||| |||||||| ||||||||||
seq2  GGTTCTACAT-CTCAGTTCCAAGACAACAG-CATGTAGAGGAGTCCCTGT  897

seq1  TGTAGAAACGTGTTGACTAGGCACACATATGATGCATAGACATAACGTGT  937
      ||||| || ||||||||||||||||| | ||||||| |||| ||  ||||
seq2  TGTAG-AATGTGTTGACTAGGCACAC-TTTGATGCA-AGACTTA--GTGT  942

seq1  ATG-TAAAATACTC  950
      ||| ||||||||||
seq2  ATGTTAAAATACTC  956

seq1: chr9_110216953_110217947
seq2: B6Ng01-049M07.g_69_1052 (reverse)

seq1  GGGGGGAAAATGACCTGCAGGCTTAAATATCTCTGTGTGAGTCTTTAACA  50
      ||||| ||||||||||||| ||||||  ||||  |||||||||||  |||
seq2  GGGGGAAAAATGACCTGCA-GCTTAA--ATCTTCGTGTGAGTCTT--ACA  45

seq1  ACAGCAAGAGGAAGTTGTTCCCGGTCTGAG-ACTGTCTATGCTGTGCTCC  99
      ||||||||| |||| |||   | ||||||| ||||||||||||||||| |
seq2  ACAGCAAGA-GAAG-TGT---CCGTCTGAGAACTGTCTATGCTGTGCT-C  89

seq1  TCAGCCTTTCTGAACATCAGCCCCTAATTGACTGCTAGTCTTTCTCTTTC  149
      |||||| |||||||||||||||||||| |||||||||||| ||||| |||
seq2  TCAGCC-TTCTGAACATCAGCCCCTAA-TGACTGCTAGTC-TTCTC-TTC  135

seq1  ACAAAGGA-GTCCGAGAC-AAAGCTGCCCCCACCGCCCTACCTTTTCAGA  197
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  ACAAAGGAGGTCCGAGACAAAAGCTGCCCCCACCGCCCTACCTTTTCAGA  185

seq1  TATACCCTTTTGCCATGGCTAGAATGTCTCTGTGTGACTTACT-CCCTAG  246
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  TATACCCCTTTGCCATGGCTAGAATGTCTCTGTGTGACTTACTCCCCTAG  235

seq1  CTCCACGGTCTTGGTCTTAACATTTGACTGCA-GGGGCGGGTTATACCTG  295
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  CTCCACGGTCTTGGTCTTAACA-TTGACTGCAGGGGGCGGGTTATACCTG  284

seq1  ATCCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGCGGTTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGCGGTTGC  334

seq1  TCTGGGCACTGTGCTCCACTCCTCCTCACGCTGCTGGGAAATGACAGCTT  395
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGGGCACTGTGCTCCACTCCTCTTCACGCTGCTGGGAAATGACAGCTT  384

seq1  GCAACATCCCCCCAAGGAAGGTGGGGGTGGGTGGGTCACCATGTGTCAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCCCCCCAAGGAAGGTGGGGGTGGGTGGGTCACCATGTGTCAGA  434

seq1  GATCTGTCAATTCTGCCTGTATTCCAGCAACCCATAGGCCACGCCCCTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCAATTCTGCCTGTATTCCAGCAACCCATAGGCCACGCCCCTCA  484

seq1  CCAAGATGCTTGGATGCTGCTCAACTTCCTCTTGCAGCTCAGGATGTGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGCTTGGATGCTGCTCAACTTCCTCTTGCAGCTCAGGATGTGCT  534

seq1  GGGGAGGCCTCTCTCGCCTGCCATTCTGACTTGTTCATCCAGGGGCCTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGCCTCTCTCGCCTGCCATTCTGACTTGTTCATCCAGGGGCCTCA  584

seq1  GCTTCTGGATTGAGACTGCCTTCCCCATGCTGGCCTCCAGCTTTCTATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGATTGAGACTGCCTTCCCCATGCTGGCCTCCAGCTTTCTATTC  634

seq1  TCCTGTTTCTATGGTAGTTGGGACTATAGGTATGGACCACCGTGACAGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTCTATGGTAGTTGGGACTATAGGTATGGACCACCGTGACAGAT  684

seq1  CTTTATAATGTCTCTTCAGGGACTCAAGGCTTGTTCAGTTTTTGTAGCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAATGTCTCTTCAGGGACTCAAGGCTTGTTCAGTTTTTGTAGCCC  734

seq1  CTAAATTTTACCTTAGTACCTGGTAGGCCATAGAAAAGACTTGAATTGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTTACCTTAGTACCTGGTAGGCCATAGAAAAGACTTGAATTGGA  784

seq1  GTAAAGTAAAAATTACTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTAAAAATTACTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTCC  834

seq1  AGATGGCCAAAGACAGTCATACAGTTCTTTGCCTTCTCCAGCCTCCCTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCAAAGACAGTCATACAGTTCTTTGCCTTCTCCAGCCTCCCTTG  884

seq1  GTGTCACTTTGTCCCAGATAAACATTTGTAGAGCTGGGCATGGTGGTACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTTTGTCCCAGATAAACATTTGTAGAGCTGGGCATGGTGGTACA  934

seq1  TGCCTGTAATCCTAGCACTCGGGAGGCAGACACAATGGGATAATGAATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAATCCTAGCACTCGGGAGGCAGACACAATGGGATAATGAATTC  984