BAC Information

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BAC

Clone NameB6Ng01-049O11
Chromosome9 (Build37)
Map Location 10,576,787 - 10,712,617
singlet/doubletdoublet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970
Downstream geneLOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049O11.bB6Ng01-049O11.g
ACCDH874023DH874024
length189990
definitionDH874023|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O11, 5' end.DH874024|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,576,787 - 10,576,975)(10,711,623 - 10,712,617)
sequence
aagaaagacttgcagtcatcctgttgtcatttgttgatctgtctttttcc
agttcaagtacattttgctacctttatttaactgtcttaagcatgcataa
tgtctcaataaggatgtatgtacgcatgtgtgtgtgcatatttgtgtgca
tgtgtttgtgtgtgtgtgtgggtgtgaaagagagagaaa
gaattcctggagagtatacttacctaactctgccctttctttaccattga
gtaagagaatgcagatgataagaacagatgtgtcaaaatcttgatgtgtt
cagtacaataaaaaagacaaagtaagtatttagtaactgtgataattaat
tggcaaaggaagccaaactttatcaggagtactgaaagacacaacagtgt
aattattactacaaatcattgagcattaattacatgccaggaatattcta
attctttaaaaagattatgacattattcaaaattcaaaatatttctcagt
agagataaaatttcctcttttatatgtgaagttactgaggtgaaaattta
atatatcaagtctaatatttaagacattaatatttaacccaagagaaaaa
taattcaggtacttactttaactctattcaagtttttagagttgtgatga
aagaatgttgcagggatgggcagtatgactaaaatctctgtgaattagaa
acccagctagacatacctactaaagcacagttacacattatgcctttaga
cagactgataatatataccacccccaaaatggtgcttaatgtggttgagc
agcatgctaatttagctgtctgccttcttgaatgtggaatcaaaactcta
gaggcccgagtactttctcaatgctggaccacagtatggtcttacatcat
tgtgatggcttcattgagaaggaatattgacattagcttgacatgaatat
agtagatggagctgaaaacagtgatgagtcttctgttcccataatcaatt
actcagcttcactgcctgaatggcagactaccacactctacagagaacac
tttggaatagctctgcagagctgagatcacttagtcattactccatatta
taaattcattggatgtgattaaagtcaatgtctgtgtattaccaggaaat
atgtatatatttaaatctaaaatgcttagatatgataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10576787_10576975
seq2: B6Ng01-049O11.b_52_240

seq1  AAGAAAGACTTGCAGTCATCCTGTTGTCATTTGTTGATCTGTCTTTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGACTTGCAGTCATCCTGTTGTCATTTGTTGATCTGTCTTTTTCC  50

seq1  AGTTCAAGTACATTTTGCTACCTTTATTTAACTGTCTTAAGCATGCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGTACATTTTGCTACCTTTATTTAACTGTCTTAAGCATGCATAA  100

seq1  TGTCTCAATAAGGATGTATGTACGCATGTGTGTGTGCATATTTGTGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAATAAGGATGTATGTACGCATGTGTGTGTGCATATTTGTGTGCA  150

seq1  TGTGTTTGTGTGTGTGTGTGGGTGTGAAAGAGAGAGAAA  189
      |||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGTGTGTGTGTGGGTGTGAAAGAGAGAGAAA  189

seq1: chr9_10711623_10712617
seq2: B6Ng01-049O11.g_67_1056 (reverse)

seq1  ATTTATCATATCTAAGCATTTTTAGGATTTAATATTATTACATATTTCCT  50
      ||||||||||||||||||||||   ||||||| ||   ||||||||||||
seq2  ATTTATCATATCTAAGCATTTT--AGATTTAA-ATATATACATATTTCCT  47

seq1  GGTATTACACAGACATTGGACTTTAATCAACATCCAATGAATTTATAATA  100
      |||| |||||||||||| |||||||||| |||||||||||||||||||||
seq2  GGTAATACACAGACATT-GACTTTAATC-ACATCCAATGAATTTATAATA  95

seq1  TGGAGTAATGACTAAGTGATCTCAGCTCTGCAGAGCTATTCCAAAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAATGACTAAGTGATCTCAGCTCTGCAGAGCTATTCCAAAGTGTT  145

seq1  CTCTGTAGAGTGTGGTAGTCTGCCATTCAGGCAGTGAAGCTGAGTAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGAGTGTGGTAGTCTGCCATTCAGGCAGTGAAGCTGAGTAATTG  195

seq1  ATTATGGGAACAGAAGACTCATCACTGTTTTCAGCTCCATCTACTATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGGAACAGAAGACTCATCACTGTTTTCAGCTCCATCTACTATATT  245

seq1  CATGTCAAGCTAATGTCAATATTCCTTCTCAATGAAGCCATCACAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAAGCTAATGTCAATATTCCTTCTCAATGAAGCCATCACAATGAT  295

seq1  GTAAGACCATACTGTGGTCCAGCATTGAGAAAGTACTCGGGCCTCTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACCATACTGTGGTCCAGCATTGAGAAAGTACTCGGGCCTCTAGAG  345

seq1  TTTTGATTCCACATTCAAGAAGGCAGACAGCTAAATTAGCATGCTGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTCCACATTCAAGAAGGCAGACAGCTAAATTAGCATGCTGCTCA  395

seq1  ACCACATTAAGCACCATTTTGGGGGTGGTATATATTATCAGTCTGTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTAAGCACCATTTTGGGGGTGGTATATATTATCAGTCTGTCTAA  445

seq1  AGGCATAATGTGTAACTGTGCTTTAGTAGGTATGTCTAGCTGGGTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAATGTGTAACTGTGCTTTAGTAGGTATGTCTAGCTGGGTTTCTA  495

seq1  ATTCACAGAGATTTTAGTCATACTGCCCATCCCTGCAACATTCTTTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGAGATTTTAGTCATACTGCCCATCCCTGCAACATTCTTTCATC  545

seq1  ACAACTCTAAAAACTTGAATAGAGTTAAAGTAAGTACCTGAATTATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTAAAAACTTGAATAGAGTTAAAGTAAGTACCTGAATTATTTTT  595

seq1  CTCTTGGGTTAAATATTAATGTCTTAAATATTAGACTTGATATATTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGTTAAATATTAATGTCTTAAATATTAGACTTGATATATTAAAT  645

seq1  TTTCACCTCAGTAACTTCACATATAAAAGAGGAAATTTTATCTCTACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTCAGTAACTTCACATATAAAAGAGGAAATTTTATCTCTACTGA  695

seq1  GAAATATTTTGAATTTTGAATAATGTCATAATCTTTTTAAAGAATTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTTGAATTTTGAATAATGTCATAATCTTTTTAAAGAATTAGAA  745

seq1  TATTCCTGGCATGTAATTAATGCTCAATGATTTGTAGTAATAATTACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGGCATGTAATTAATGCTCAATGATTTGTAGTAATAATTACACT  795

seq1  GTTGTGTCTTTCAGTACTCCTGATAAAGTTTGGCTTCCTTTGCCAATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCTTTCAGTACTCCTGATAAAGTTTGGCTTCCTTTGCCAATTAA  845

seq1  TTATCACAGTTACTAAATACTTACTTTGTCTTTTTTATTGTACTGAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAGTTACTAAATACTTACTTTGTCTTTTTTATTGTACTGAACAC  895

seq1  ATCAAGATTTTGACACATCTGTTCTTATCATCTGCATTCTCTTACTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGATTTTGACACATCTGTTCTTATCATCTGCATTCTCTTACTCAAT  945

seq1  GGTAAAGAAAGGGCAGAGTTAGGTAAGTATACTCTCCAGGAATTC  995
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGAAAGGGCAGAGTTAGGTAAGTATACTCTCCAGGAATTC  990