BAC Information

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BAC

Clone NameB6Ng01-050B21
Chromosome9 (Build37)
Map Location 58,394,902 - 58,458,252
singlet/doubletdoublet
Overlap geneCd276, Nptn
Upstream geneMpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik
Downstream gene2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050B21.bB6Ng01-050B21.g
ACCDH874166DH874167
length1,0911,147
definitionDH874166|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B21, 5' end.DH874167|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,457,139 - 58,458,252)(58,394,902 - 58,396,055)
sequence
gaattccaacatgtttcaaaaagaaacagaccaaccttaaataaagtaaa
attataaataaaaataaaagcaacttataatcaattccagcttttttttt
tttaagatttattttacttatgagtacactgtagctgtcttcagacacac
caaaagagggcaccagttatctcattacagatggttgtgagataccatgt
ggctgctgagaactgaactcaggacctttggaagagcagtcagtgcttaa
ctgctgagccatctctccccaaatctggcttttttttaaaatgttcttga
ggggctagagagatagctcactgcctaagagtgctgactgagctgagcat
ggtaacacgcctttaataccagcacttggggggcagaggcaacaaatttc
tgggttcgaggccagcctgatctactgagttccaggacagccaggactac
acagagaaaccctgtctcgggaaaaaaaaaaaaaaaaaagagtgctgact
gatcttccaaatgactaggttttcattttctcatatggaatcatctataa
ctccagttcaaaagaatccaatgccttcttttgatctccatggacactag
gcacatatgtgatacacagactaaaatcagcaaaaacactaatatacaca
aaataaaatgtcttaaaataaaatatagaacctgacagcaaatctaagga
atagacataattagctttggtttcatttttgtttgggggttttatttcct
gaaacagggctctatgtgactctggctgtactggaactcactatgtagac
caggctggccttgagttcacagaaatccacgtgccctgcctcccaagtac
agggattaaagtcgagctttacacctagctgagctggaagactttaataa
caagaaaagaatcagaagcccgaaatgagttctacattgtttcttacact
acagttcccagggctactcaatatcaacagcttgatgtagttctaagaga
tgaacgctctctataatattcaaaacagcaagagactgagtctaggcttt
acagtctcagaaaggttcatgactaaataaaccctgaacta
gaattcctcttttatttccagtggcttcttctgattccagggatcagccc
ccttgcagggaatctacccgatatgcagggaggttgtggctcaacctcaa
gcttgggcttgtgaccagatctgactcagggataaacccttgtccaactc
ccagttcagggatgggatgtgagccaagctgtaaccaatcagagtctttg
ctcagcttttctgcagaaaccctcagtaaagacttcctaactaaggctcc
taggaaggatatggtctgggctgttagcaatcaagtcgtcagttatcagc
aatctaaaggaactgatgcaggggctggggagatggctcggtggtggata
aagtgactgccactttatcaaagcatatcaaacaggatctgagcttagag
ccccagcacccacaccagcggttctcaacccgtgggtcacgacctcatgg
ggggggtcacacatcagatatctacattatgactcctaacagtggcacat
tgcagtaacgaagtagcaatgaaaatcattttatggtcgagggtcaccac
aacatgagaaactgtattaaaggctcgcagcattgggagggttgagaacc
actgtcctacagaaaagcagggtgtttgacttctggcttctatttacaca
cacacacacacacacacacagagccatagacaagcttgcccctgtatgaa
cacactcacatacatagatacacactcacacacacagacacacactcata
aagcatgcactgcatccaatcacacccttccaggggggaccacagacctg
ctcatccatttgaataacagctcagctccaaggaagcccgatctgacctg
actctgcccacttcccctctctcttccttgcacttgcccctcaatgcagt
gagctgcttccagcttctacagcacaagatctccttctatctcagaggga
tggttttatcatatagttgcgtcatgctgagaaggcatggtaataccgct
ttcttctgaacagtaaaggtcagaaagaacaaagtctgctacttgctgtc
agagttgcctacttgaacacctcaaaagcctcctggagatgcaactacaa
atgcttccattactcttacatccttaatcctagcaaagagactgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58457139_58458252
seq2: B6Ng01-050B21.b_43_1133 (reverse)

seq1  TAGTTTTAGGGTTTATATTTAGTCATGAAACTGTTTACTGGAAGACTGTA  50
      ||| || ||||||  |||||||||||||| |   || |||  ||||||| 
seq2  TAG-TTCAGGGTT--TATTTAGTCATGAACC---TTTCTG--AGACTGT-  41

seq1  AAAGCCTAGACTCAGTGTCTTTGCTGTTTTTGATAATTTATTAAGGAGAG  100
      |||||||||||||||| || ||||||||||  |     |||||  |||||
seq2  AAAGCCTAGACTCAGTCTC-TTGCTGTTTTGAA-----TATTATAGAGAG  85

seq1  CGTTCAATCTCTTAGAACCTACATCAAGGCTGTTGGATATTGAGGTAGCC  150
      ||||| ||||||||||| ||||||||| |||||| |||||||| ||||||
seq2  CGTTC-ATCTCTTAGAA-CTACATCAA-GCTGTT-GATATTGA-GTAGCC  130

seq1  CTGGGAACTGTAGTTGTAAGAAACAATGTAAGAACTCATTTCGGGCTTCT  200
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  CTGGGAACTGTAG-TGTAAGAAACAATGT-AGAACTCATTTCGGGCTTCT  178

seq1  GATTCTTTTCTTTGTTATTAAAGTCTTCCAGTTCAGCTAGGTGTAAAGCT  250
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  GATTCTTTTC-TTGTTATTAAAGTCTTCCAGCTCAGCTAGGTGTAAAGCT  227

seq1  TGACTTTAATCCCTGTACTTGGGAGGCAGGGCACGTGGATTTCTGTGAAC  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTTAATCCCTGTACTTGGGAGGCAGGGCACGTGGATTTCTGTGAAC  277

seq1  TCAAGGCCAGCCTGGTCTACATAGTGAGTTCCAGTACAGCCAGAGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGCCTGGTCTACATAGTGAGTTCCAGTACAGCCAGAGTCACA  327

seq1  TAGAGCCCTGTTTCAGGAAATAAAACCCCCAAACAAAAATGAAACCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCTGTTTCAGGAAATAAAACCCCCAAACAAAAATGAAACCAAAG  377

seq1  CTAATTATGTCTATTCCTTAGATTTGCTGTCAGGTTCTATATTTTATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATGTCTATTCCTTAGATTTGCTGTCAGGTTCTATATTTTATTTT  427

seq1  AAGACATTTTATTTTGTGTATATTAGTGTTTTTGCTGATTTTAGTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTTATTTTGTGTATATTAGTGTTTTTGCTGATTTTAGTCTGTG  477

seq1  TATCACATATGTGCCTAGTGTCCATGGAGATCAAAAGAAGGCATTGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACATATGTGCCTAGTGTCCATGGAGATCAAAAGAAGGCATTGGATT  527

seq1  CTTTTGAACTGGAGTTATAGATGATTCCATATGAGAAAATGAAAACCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAACTGGAGTTATAGATGATTCCATATGAGAAAATGAAAACCTAG  577

seq1  TCATTTGGAAGATCAGTCAGCACTCTTTTTTTTTTTTTTTTTTCCCGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGAAGATCAGTCAGCACTCTTTTTTTTTTTTTTTTTTCCCGAGA  627

seq1  CAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCAGTAGATCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCAGTAGATCAGGC  677

seq1  TGGCCTCGAACTCAGAAATTTGTTGCCTCTGCCTCCCAAGTGCTGGTATT  750
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TGGCCTCGAACCCAGAAATTTGTTGCCTCTGCCCCCCAAGTGCTGGTATT  727

seq1  AAAGGCGTGTTACCATGCTCAGCTCAGTCAGCACTCTTAGGCAGTGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTGTTACCATGCTCAGCTCAGTCAGCACTCTTAGGCAGTGAGCT  777

seq1  ATCTCTCTAGCCCCTCAAGAACATTTTAAAAAAAAGCCAGATTTGGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTAGCCCCTCAAGAACATTTTAAAAAAAAGCCAGATTTGGGGAG  827

seq1  AGATGGCTCAGCAGTTAAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGCAGTTAAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTC  877

seq1  AGTTCTCAGCAGCCACATGGTATCTCACAACCATCTGTAATGAGATAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGCAGCCACATGGTATCTCACAACCATCTGTAATGAGATAACT  927

seq1  GGTGCCCTCTTTTGGTGTGTCTGAAGACAGCTACAGTGTACTCATAAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTCTTTTGGTGTGTCTGAAGACAGCTACAGTGTACTCATAAGTA  977

seq1  AAATAAATCTTAAAAAAAAAAAAGCTGGAATTGATTATAAGTTGCTTTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATCTTAAAAAAAAAAAAGCTGGAATTGATTATAAGTTGCTTTTA  1027

seq1  TTTTTATTTATAATTTTACTTTATTTAAGGTTGGTCTGTTTCTTTTTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTATAATTTTACTTTATTTAAGGTTGGTCTGTTTCTTTTTGAA  1077

seq1  ACATGTTGGAATTC  1114
      ||||||||||||||
seq2  ACATGTTGGAATTC  1091

seq1: chr9_58394902_58396055
seq2: B6Ng01-050B21.g_65_1211

seq1  GAATTCCTCTTTTATTTCCAGTGGCTTCTTCTGATTCCAGGGATCAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTTATTTCCAGTGGCTTCTTCTGATTCCAGGGATCAGCCC  50

seq1  CCTTGCAGGGAATCTACCCGATATGCAGGGAGGTTGTGGCTCAACCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGGGAATCTACCCGATATGCAGGGAGGTTGTGGCTCAACCTCAA  100

seq1  GCTTGGGCTTGTGACCAGATCTGACTCAGGGATAAACCCTTGTCCAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCTTGTGACCAGATCTGACTCAGGGATAAACCCTTGTCCAACTC  150

seq1  CCAGTTCAGGGATGGGATGTGAGCCAAGCTGTAACCAATCAGAGTCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCAGGGATGGGATGTGAGCCAAGCTGTAACCAATCAGAGTCTTTG  200

seq1  CTCAGCTTTTCTGCAGAAACCCTCAGTAAAGACTTCCTAACTAAGGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTTTCTGCAGAAACCCTCAGTAAAGACTTCCTAACTAAGGCTCC  250

seq1  TAGGAAGGATATGGTCTGGGCTGTTAGCAATCAAGTCGTCAGTTATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGATATGGTCTGGGCTGTTAGCAATCAAGTCGTCAGTTATCAGC  300

seq1  AATCTAAAGGAACTGATGCAGGGGCTGGGGAGATGGCTCGGTGGTGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAGGAACTGATGCAGGGGCTGGGGAGATGGCTCGGTGGTGGATA  350

seq1  AAGTGACTGCCACTTTATCAAAGCATATCAAACAGGATCTGAGCTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGCCACTTTATCAAAGCATATCAAACAGGATCTGAGCTTAGAG  400

seq1  CCCCAGCACCCACACCAGCGGTTCTCAACCCGTGGGTCACGACCTCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACCCACACCAGCGGTTCTCAACCCGTGGGTCACGACCTCATGG  450

seq1  GGGGGGTCACACATCAGATATCTACATTATGACTCCTAACAGTGGCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTCACACATCAGATATCTACATTATGACTCCTAACAGTGGCACAT  500

seq1  TGCAGTAACGAAGTAGCAATGAAAATCATTTTATGGTCGAGGGTCACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAACGAAGTAGCAATGAAAATCATTTTATGGTCGAGGGTCACCAC  550

seq1  AACATGAGAAACTGTATTAAAGGCTCGCAGCATTGGGAGGGTTGAGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAGAAACTGTATTAAAGGCTCGCAGCATTGGGAGGGTTGAGAACC  600

seq1  ACTGTCCTACAGAAAAGCAGGGTGTTTGACTTCTGGCTTCTATTTACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTACAGAAAAGCAGGGTGTTTGACTTCTGGCTTCTATTTACACA  650

seq1  CACACACACACACACACACAGAGCCATAGACAAGCTTGCCCCTGTATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGAGCCATAGACAAGCTTGCCCCTGTATGAA  700

seq1  CACACTCACATACATAGATACACACTCACACACACAGACACACACTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACATACATAGATACACACTCACACACACAGACACACACTCATA  750

seq1  AAGCATGCACTGCATCCAATCACACCCTTCCAGGGGGGACCACAGACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCACTGCATCCAATCACACCCTTCCAGGGGGGACCACAGACCTG  800

seq1  CTCATCCATTTGAATAACAGCTCAGCTCCAAGGAAGCCCGATCTGACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCATTTGAATAACAGCTCAGCTCCAAGGAAGCCCGATCTGACCTG  850

seq1  ACTCTGCCCACTTCCCCTCCTCTCCTTCCTTGCACTTGCCCCTCAATGCA  900
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  ACTCTGCCCACTTCCCCT-CTCT-CTTCCTTGCACTTGCCCCTCAATGCA  898

seq1  GTGAGCTGCTTCCAGCTTCTACAGCACAAGATCCTCCTTCCTATCTCAGA  950
      |||||||||||||||||||||||||||||||| |||||| ||||||||| 
seq2  GTGAGCTGCTTCCAGCTTCTACAGCACAAGAT-CTCCTT-CTATCTCAG-  945

seq1  AGGGATGGTTTTTACCATTATAGTCGC-TCATGCTGAGAAGGCATGGTAA  999
      |||||||| ||||| || |||||| || ||||||||||||||||||||||
seq2  AGGGATGG-TTTTATCA-TATAGTTGCGTCATGCTGAGAAGGCATGGTAA  993

seq1  AACCGCTTTCTCCTGAACAGT-AAGGTCAGAAAGAACAAAGTCTGCCACT  1048
       |||||||||| ||||||||| |||||||||||||||||||||||| |||
seq2  TACCGCTTTCTTCTGAACAGTAAAGGTCAGAAAGAACAAAGTCTGCTACT  1043

seq1  TGCTGTTCAGTGTGCCTTACCTG-ACACCTC-AGAGCCTCCCTGAGTAGC  1096
      ||||| |||| ||  | ||| || ||||||| | |||||||  |||  ||
seq2  TGCTG-TCAGAGTTGCCTACTTGAACACCTCAAAAGCCTCCTGGAGATGC  1092

seq1  AACTACGAGTGCTTCCATTAACTCTTACATCCTTAATCCTAGCGAAGAAG  1146
      |||||| | |||||||||| ||||||||||||||||||||||| ||| ||
seq2  AACTACAAATGCTTCCATT-ACTCTTACATCCTTAATCCTAGCAAAG-AG  1140

seq1  ACTTGCCC  1154
      || |||||
seq2  AC-TGCCC  1147