BAC Information

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BAC

Clone NameB6Ng01-050E08
Chromosome9 (Build37)
Map Location 79,723,788 - 79,857,594
singlet/doubletdoublet
Overlap geneFilip1, LOC100041218, LOC666490
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a
Downstream geneSenp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050E08.bB6Ng01-050E08.g
ACCDH874268DH874269
length7051,037
definitionDH874268|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E08, 5' end.DH874269|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,723,788 - 79,724,492)(79,856,534 - 79,857,594)
sequence
gaattctacgggtgatgtcacttttctccgaagagaacgggccatcacag
ctttttactgacataattaattatctggaacttgattctgggccagaaaa
ttctcaaggcacagcccctgaagaattaactctgctgtgttccccatcct
tcaacttttaaagagacaggataccatgtcttttcctttctcggacactg
ataatggtatttttgttcggtgatatcaagtcacagcaagtgaactgggg
caccattctgtgatttcacaaggaagaccttccgttcaatgggccacaaa
ctccaaaggtcagagtagatcagggacacaaagcacagcgtttagggctc
agtctcaagtgctacaggaatgcatctcaatgactgaatagattctgggg
gaaactcatgaatccccagccagaagaatgagatccacaccaaagctaac
gaagttaaccatccataaggtgaaaggttggtttatcagccacaaaagca
gaaagcattagcagtttaaaccacacacaagatgagaaagtaccagggca
atgatggttgtactatgagaattttcacatatgtttttatatagatccaa
atgaacgcatgcgatattcattagaaaaattgccctgctattgagatttg
agattatgtaaatgagctgccacctgtctctgcaacaggggtgggggttg
ggggg
gaattcaggagatggaattcagatattcatgcttccaaagcaactttgtt
ttggaaacattagcttttgtatgttgtgtgtgtgtgtgtgtgtgtgcccc
aggctagccttgaacttgacatgtaggaggcacaggcctgtaatctctgc
tacaggaggctgacataagggaataaaaattattattttttaaatttgca
attaaaatacagttaattaaataatctctcccctttgttttccttcccta
actttctcattccctctcaaatggatgaccttattttctttattattgtt
atatatgaatatgcacatacatatataaatgcaaccggccaaatccattt
agtgttgcttgcatgtgtacgatttcaggctgaccactacatattgagta
agcaatcagggggcgcatccctcagaagagataatcctctctttcttcac
agtcatcacttccttgtaggtctttgagatttcctccttccattagcatg
tctactggtattggcattgttgaggtagcatgtgtgtagtctaggagata
cagtctcacagcagaattcctggtcctctgcctcttacaatctttctgct
gccctcttctacagccttaggtacaggagttctgttgtaggtgtatctgc
tggggctgggcactcacaatcaataaatctatgcactttgaacagtgtgg
ttttctgcagtggtttcattagatcttgactcaaaaaaagatttaaaagg
ctgggacttaatcagtggtaaagttttttacctagaaaaatatgtgagtg
tgtttattacctcatttgaactggaatagggggaattatgatggaatggt
ttgggtagtgatgaagactggacaagaacactgagctgtggtgacacaca
cgactcagagtctgtgggacagtgggcagaaaagcacccatgctgttaga
atattaggatttttgtcacttgattgacaatggaactgttatttggaacg
cgtccatgcccaggccagtctttctgatttcaatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79723788_79724492
seq2: B6Ng01-050E08.b_42_746

seq1  GAATTCTACGGGTGATGTCACTTTTCTCCGAAGAGAACGGGCCATCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGGGTGATGTCACTTTTCTCCGAAGAGAACGGGCCATCACAG  50

seq1  CTTTTTACTGACATAATTAATTATCTGGAACTTGATTCTGGGCCAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACTGACATAATTAATTATCTGGAACTTGATTCTGGGCCAGAAAA  100

seq1  TTCTCAAGGCACAGCCCCTGAAGAATTAACTCTGCTGTGTTCCCCATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGGCACAGCCCCTGAAGAATTAACTCTGCTGTGTTCCCCATCCT  150

seq1  TCAACTTTTAAAGAGACAGGATACCATGTCTTTTCCTTTCTCGGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTTAAAGAGACAGGATACCATGTCTTTTCCTTTCTCGGACACTG  200

seq1  ATAATGGTATTTTTGTTCGGTGATATCAAGTCACAGCAAGTGAACTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGTATTTTTGTTCGGTGATATCAAGTCACAGCAAGTGAACTGGGG  250

seq1  CACCATTCTGTGATTTCACAAGGAAGACCTTCCGTTCAATGGGCCACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTCTGTGATTTCACAAGGAAGACCTTCCGTTCAATGGGCCACAAA  300

seq1  CTCCAAAGGTCAGAGTAGATCAGGGACACAAAGCACAGCGTTTAGGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGGTCAGAGTAGATCAGGGACACAAAGCACAGCGTTTAGGGCTC  350

seq1  AGTCTCAAGTGCTACAGGAATGCATCTCAATGACTGAATAGATTCTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAGTGCTACAGGAATGCATCTCAATGACTGAATAGATTCTGGGG  400

seq1  GAAACTCATGAATCCCCAGCCAGAAGAATGAGATCCACACCAAAGCTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCATGAATCCCCAGCCAGAAGAATGAGATCCACACCAAAGCTAAC  450

seq1  GAAGTTAACCATCCATAAGGTGAAAGGTTGGTTTATCAGCCACAAAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAACCATCCATAAGGTGAAAGGTTGGTTTATCAGCCACAAAAGCA  500

seq1  GAAAGCATTAGCAGTTTAAACCACACACAAGATGAGAAAGTACCAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTAGCAGTTTAAACCACACACAAGATGAGAAAGTACCAGGGCA  550

seq1  ATGATGGTTGTACTATGAGAATTTTCACATATGTTTTTATATAGATCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTTGTACTATGAGAATTTTCACATATGTTTTTATATAGATCCAA  600

seq1  ATGAACGCATGCGATATTCATTAGAAAAATTGCCCTGCTATTGAGATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACGCATGCGATATTCATTAGAAAAATTGCCCTGCTATTGAGATTTG  650

seq1  AGATTATGTAAATGAGCTGCCACCTGTCTCTGCAACAGGGGTGGGGGTGG  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGATTATGTAAATGAGCTGCCACCTGTCTCTGCAACAGGGGTGGGGGTTG  700

seq1  GGGGG  705
      |||||
seq2  GGGGG  705

seq1: chr9_79856534_79857594
seq2: B6Ng01-050E08.g_66_1102 (reverse)

seq1  GTCATTTGAAAATCAGAAATGAACTGTGGCTTTGGGGGCATGGGAACTGC  50
      ||||||   |||||||||| ||    |||| |   ||||||||  || ||
seq2  GTCATT--GAAATCAGAAA-GA---CTGGCCT---GGGCATGG--AC-GC  38

seq1  TGTTTCCAAAAGTACACAGTTTCCATTTGTCCATCAAGTGAACAAAATTC  100
         |||||||  || |||| ||||| ||||| |||||||||  |||||  
seq2  --GTTCCAAA--TA-ACAG-TTCCA-TTGTCAATCAAGTGACAAAAAT--  79

seq1  CCTATTATTCTAACAGCATGGGGTGCTTTTCTGCCCCACTGTCCCCACAG  150
      |||| |||||||||||||| ||||||||||||| |||||||| |||||||
seq2  CCTAATATTCTAACAGCAT-GGGTGCTTTTCTG-CCCACTGT-CCCACAG  126

seq1  ACTCTGAGTCGTGTGTGTCACCCACAGCTCAGTTGTTCTTGTCCAGTTCT  200
      |||||||||||||||||||| ||||||||||| ||||||||||||| |||
seq2  ACTCTGAGTCGTGTGTGTCA-CCACAGCTCAG-TGTTCTTGTCCAG-TCT  173

seq1  TCATCACTACCAAAACCATTCCATCATTGGTTCCCCTA-TCCAGTTCAAT  249
      ||||||||||| |||||||||||||||   | |||||| |||||||||| 
seq2  TCATCACTACCCAAACCATTCCATCATAATTCCCCCTATTCCAGTTCAAA  223

seq1  TG-GGTAATGAACACACTCACATA-TTTTCTAGGT-AAATACTTTACCAC  296
      || |||||| |||||||||||||| |||||||||| ||| ||||||||||
seq2  TGAGGTAATAAACACACTCACATATTTTTCTAGGTAAAAAACTTTACCAC  273

seq1  TGATAAGTTCCCAGCCTTTTAAATCTTTTTTTGAGTCAAGATCTAATGGA  346
      |||| |  ||||||||||||||||||||||||||||||||||||||| ||
seq2  TGATTAAGTCCCAGCCTTTTAAATCTTTTTTTGAGTCAAGATCTAAT-GA  322

seq1  AACCACTGCAGAAAACCACACTGTTCAAAGTGCATAGATTTATTGATTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGCAGAAAACCACACTGTTCAAAGTGCATAGATTTATTGATTGT  372

seq1  GAGTGCCCAGCCCCAGCAGATACACCTACAACAGAACTCCTGTACCTAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCCAGCCCCAGCAGATACACCTACAACAGAACTCCTGTACCTAAG  422

seq1  GCTGTAGAAGAGGGCAGCAGAAAGATTGTAAGAGGCAGAGGACCAGGAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGAAGAGGGCAGCAGAAAGATTGTAAGAGGCAGAGGACCAGGAAT  472

seq1  TCTGCTGTGAGACTGTATCTCCTAGACTACACACATGCTACCTCAACAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTGAGACTGTATCTCCTAGACTACACACATGCTACCTCAACAAT  522

seq1  GCCAATACCAGTAGACATGCTAATGGAAGGAGGAAATCTCAAAGACCTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATACCAGTAGACATGCTAATGGAAGGAGGAAATCTCAAAGACCTAC  572

seq1  AAGGAAGTGATGACTGTGAAGAAAGAGAGGATTATCTCTTCTGAGGGATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTGATGACTGTGAAGAAAGAGAGGATTATCTCTTCTGAGGGATG  622

seq1  CGCCCCCTGATTGCTTACTCAATATGTAGTGGTCAGCCTGAAATCGTACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCTGATTGCTTACTCAATATGTAGTGGTCAGCCTGAAATCGTACA  672

seq1  CATGCAAGCAACACTAAATGGATTTGGCCGGTTGCATTTATATATGTATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGCAACACTAAATGGATTTGGCCGGTTGCATTTATATATGTATG  722

seq1  TGCATATTCATATATAACAATAATAAAGAAAATAAGGTCATCCATTTGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATTCATATATAACAATAATAAAGAAAATAAGGTCATCCATTTGAG  772

seq1  AGGGAATGAGAAAGTTAGGGAAGGAAAACAAAGGGGAGAGATTATTTAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGAGAAAGTTAGGGAAGGAAAACAAAGGGGAGAGATTATTTAAT  822

seq1  TAACTGTATTTTAATTGCAAATTTAAAAAATAATAATTTTTATTCCCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTATTTTAATTGCAAATTTAAAAAATAATAATTTTTATTCCCTTA  872

seq1  TGTCAGCCTCCTGTAGCAGAGATTACAGGCCTGTGCCTCCTACATGTCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCTCCTGTAGCAGAGATTACAGGCCTGTGCCTCCTACATGTCAA  922

seq1  GTTCAAGGCTAGCCTGGGGCACACACACACACACACACACAACATACAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCTAGCCTGGGGCACACACACACACACACACACAACATACAAA  972

seq1  AGCTAATGTTTCCAAAACAAAGTTGCTTTGGAAGCATGAATATCTGAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGTTTCCAAAACAAAGTTGCTTTGGAAGCATGAATATCTGAATT  1022

seq1  CCATCTCCTGAATTC  1061
      |||||||||||||||
seq2  CCATCTCCTGAATTC  1037