BAC Information

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BAC

Clone NameB6Ng01-050F12
Chromosome9 (Build37)
Map Location 47,611,952 - 47,731,407
singlet/doubletdoublet
Overlap geneCadm1
Upstream gene2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050F12.bB6Ng01-050F12.g
ACCDH874318DH874319
length887991
definitionDH874318|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F12, 5' end.DH874319|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,611,952 - 47,612,846)(47,730,387 - 47,731,407)
sequence
gaattctgagtgcgagctgaaggaaacaaagccttgctctggacacaagg
cagcctgagctgggattcctgctgtgcgccttccgtcttccccaccagag
ccttgctctttagaatgttttgcaaaacatcctcattttgttcaggtttt
gcccatttataaaaagagagaaacaaatgaagagctgagtctagaaggga
aaaatgaaaacaaagcttccagaaaccggtattagagcacttccccgccc
agattaccacctgacagctaatcacagacatgggcatgactctcaaaatg
agttttattgactgggtgtagccaggtattttataaatccatatccccat
ccatccaaggtctagagaagggtaggtgtctctccctgcatccctacctc
ccatcccctcaactagaggaaaattgggcattggagagatgatcaaaatt
tgttctttatctgtgacaaaatgaatgtttctgtgatattgatagtgccc
tgtggtgatggaggatgaaaaacctggaaattgggaactccctcctgttt
agactggaggataaagcttcccacagcaggtgcttggctcctccctggct
ctcccaggttaattctgttcccaggttgtattcttaaagtgaaaacagct
gtgttctcaggttgggccagttgctatctggtctctgtgttctgtgtcca
gcaggctccagtgtgtgtatcaatgagctgggttcagagaggttatctta
gtgattattattccttatgagaaacatcaaggcagagagaccgctgattg
agcccagtttggtactagcattctttgtgcaaggccagaccaggacatct
gagttctggagtttccatggactgtggtaatggagcc
gaattctacactcagtcactcagacatctattcaggaaacacttattctt
tgtgagatgttgagaataataacaagcactattaatagctaatatttttg
agtgcctgccaccattttaagcactaggtgaaaattaatgtattttcctc
cccaggaaccctagggtaggcgctatggtgactgtcatttttctagatga
gggaagccagacacagagaggttggttatcctgcccaaggacccacactt
gaggattcccgtccatcagcaggtgtcatgagtcagcactgtggatccca
gattttcccacaccatcgcaagtgctgaggagatgatgtgttgaataaag
cattgttatcctgcccgtgagatgctcacaatgcagagaaggaaacattt
gtgtaaacaaataaagaaaactcaagagatgatataatgtgtccagagag
aagcataaacaagtatcagtggggtgctagggaggggggagccgtgctgg
ctaagcactgtgcagggtgaaggattcaggctggacaggaggtctgggga
ctcctctacacagccagcagtccaggtgagcgggatcgctccaggttcga
ttgtctaataggatcattgcataaccctcaaagggttactaatgacctca
cggatatgccaatccagcctcttagctcagtaaatgctacagaagccaaa
catggaccctggacttccaggaagtcgttcctccagtggccgacactgga
tcctttgcttcccatcccactccccggggccctcagcacacagtggagct
aagagaaccttgaacttctgatccactgcctccacctccccagtgctgga
tgtcagagtagatcactaagccttgtttatgctatgtagagacaaagtgg
gttgcatgccgcagcatactaaccctgacttaccacagcctgtcagcaaa
taccctgaatatctgcactctatggaagtgctttttatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_47611952_47612846
seq2: B6Ng01-050F12.b_45_931

seq1  GAATTCTGAGTGCGAGCTGAAGGAAACAAAGCCTTGCTCTGGACACAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTGCGAGCTGAAGGAAACAAAGCCTTGCTCTGGACACAAGG  50

seq1  CAGCCTGAGCTGGGATTCCTGCTGTGCGCCTTCCGTCTTCCCCACCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAGCTGGGATTCCTGCTGTGCGCCTTCCGTCTTCCCCACCAGAG  100

seq1  CCTTGCTCTTTAGAATGTTTTGCAAAACATCCTCATTTTGTTCAGGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTCTTTAGAATGTTTTGCAAAACATCCTCATTTTGTTCAGGTTTT  150

seq1  GCCCATTTATAAAAAGAGAGAAACAAATGAAGAGCTGAGTCTAGAAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTTATAAAAAGAGAGAAACAAATGAAGAGCTGAGTCTAGAAGGGA  200

seq1  AAAATGAAAACAAAGCTTCCAGAAACCGGTATTAGAGCACTTCCCCGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAACAAAGCTTCCAGAAACCGGTATTAGAGCACTTCCCCGCCC  250

seq1  AGATTACCACCTGACAGCTAATCACAGACATGGGCATGACTCTCAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACCACCTGACAGCTAATCACAGACATGGGCATGACTCTCAAAATG  300

seq1  AGTTTTATTGACTGGGTGTAGCCAGGTATTTTATAAATCCATATCCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTGACTGGGTGTAGCCAGGTATTTTATAAATCCATATCCCCAT  350

seq1  CCATCCAAGGTCTAGAGAAGGGTAGGTGTCTCTCCCTGCATCCCTACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAAGGTCTAGAGAAGGGTAGGTGTCTCTCCCTGCATCCCTACCTC  400

seq1  CCATCCCCTCAACTAGAGGAAAATTGGGCATTGGAGAGATGATCAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCCTCAACTAGAGGAAAATTGGGCATTGGAGAGATGATCAAAATT  450

seq1  TGTTCTTTATCTGTGACAAAATGAATGTTTCTGTGATATTGATAGTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTATCTGTGACAAAATGAATGTTTCTGTGATATTGATAGTGCCC  500

seq1  TGTGGTGATGGAGGATGAAAAACCTGGAAATTGGGAACTCCCTCCTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGATGGAGGATGAAAAACCTGGAAATTGGGAACTCCCTCCTGTTT  550

seq1  AGACTGGAGGATAAAGCTTCCCACAGCAGGTGCTTGGCTCCTCCCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAGGATAAAGCTTCCCACAGCAGGTGCTTGGCTCCTCCCTGGCT  600

seq1  CTCCCAGGTTAATTCTGTTCCCAGGTTGTATTCTTAAAGTGAAAACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGTTAATTCTGTTCCCAGGTTGTATTCTTAAAGTGAAAACAGCT  650

seq1  GTGTTCTCAGGTTGGGCCAGTTGCTATCTGGTCTCTGTGTTCTGTGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCAGGTTGGGCCAGTTGCTATCTGGTCTCTGTGTTCTGTGTCCA  700

seq1  GCAGGCTCCAGTGTGTGTATCAATGAGCTGGGTTCAGAGAGGTTATCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTCCAGTGTGTGTATCAATGAGCTGGGTTCAGAGAGGTTATCTTA  750

seq1  GTGATTATTATTCCTTATGAGAAACAATCAAGGCAGAGAGACCGCTGATT  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGATTATTATTCCTTATGAGAAAC-ATCAAGGCAGAGAGACCGCTGATT  799

seq1  GAAGCCCAGTTTGTAACCTAGCATTCTTTGTGCAAGGCCAGACCAGGGAC  850
      | |||||||||||  | |||||||||||||||||||||||||||| ||||
seq2  G-AGCCCAGTTTGGTA-CTAGCATTCTTTGTGCAAGGCCAGACCA-GGAC  846

seq1  ATCTTGGAGTTCCTGGAGTTTCCATGGACTGTGGGTAATGGAGCC  895
      ||||  ||||| |||||||||||||||||||| ||||||||||||
seq2  ATCT--GAGTT-CTGGAGTTTCCATGGACTGT-GGTAATGGAGCC  887

seq1: chr9_47730387_47731407
seq2: B6Ng01-050F12.g_67_1057 (reverse)

seq1  AATAAAAAAGCCAACACTTCCATAGATGTTGCCAGAATATTCCAAGGGTA  50
      |||| ||||   | |||||||||||| ||   ||| ||||||  ||||||
seq2  AATATAAAA---AGCACTTCCATAGA-GT--GCAG-ATATTC--AGGGTA  41

seq1  TTTTTGCTGAACAAGGGCTGGTGTGTAAGTTCAGGGTTTAGTATGCCTTG  100
        ||||||| |||  |||| ||| ||||| |||||| |||||||||  ||
seq2  --TTTGCTG-ACA--GGCT-GTG-GTAAG-TCAGGG-TTAGTATGC--TG  80

seq1  CCGGCATGCAACCCCACTTTGTTCTCTACCATAGCATAAACCAGGCTTAG  150
       |||||||||| ||||||||| |||||| |||||||||||| ||||||||
seq2  -CGGCATGCAA-CCCACTTTG-TCTCTA-CATAGCATAAACAAGGCTTAG  126

seq1  TGATCTACTCCTGACATTCCAGCACTGGGGAGGTGGAGGCAGGTGGATCA  200
      ||||||||| |||||| |||||||||||||||||||||||| ||||||||
seq2  TGATCTACT-CTGACA-TCCAGCACTGGGGAGGTGGAGGCA-GTGGATCA  173

seq1  GAAGTTCAAGGTTCTCTTTAGCTCCACTGTGTGCTTGAGGGCCCCGGGGA  250
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  GAAGTTCAAGGTTCTC-TTAGCTCCACTGTGTGC-TGAGGGCCCCGGGGA  221

seq1  GTGGGATGGGAAGCAAAGGATCCCAGTGTCGGCCACTGGAGGAACGACTT  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGGGATGGGAAGCAAAGGAT-CCAGTGTCGGCCACTGGAGGAACGACTT  270

seq1  CCTGGAAGTCCAGGGTCCATGTTTGGCTTCTGTAGCATTTACTGAGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGTCCAGGGTCCATGTTTGGCTTCTGTAGCATTTACTGAGCTAA  320

seq1  GAGGCTGGATTGGCATATCCGTGAGGTCATTAGTAACCCTTTGAGGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGATTGGCATATCCGTGAGGTCATTAGTAACCCTTTGAGGGTTA  370

seq1  TGCAATGATCCTATTAGACAATCGAACCTGGAGCGATCCCGCTCACCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGATCCTATTAGACAATCGAACCTGGAGCGATCCCGCTCACCTGG  420

seq1  ACTGCTGGCTGTGTAGAGGAGTCCCCAGACCTCCTGTCCAGCCTGAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGCTGTGTAGAGGAGTCCCCAGACCTCCTGTCCAGCCTGAATCC  470

seq1  TTCACCCTGCACAGTGCTTAGCCAGCACGGCTCCCCCCTCCCTAGCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCTGCACAGTGCTTAGCCAGCACGGCTCCCCCCTCCCTAGCACCC  520

seq1  CACTGATACTTGTTTATGCTTCTCTCTGGACACATTATATCATCTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATACTTGTTTATGCTTCTCTCTGGACACATTATATCATCTCTTGA  570

seq1  GTTTTCTTTATTTGTTTACACAAATGTTTCCTTCTCTGCATTGTGAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTATTTGTTTACACAAATGTTTCCTTCTCTGCATTGTGAGCAT  620

seq1  CTCACGGGCAGGATAACAATGCTTTATTCAACACATCATCTCCTCAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGGCAGGATAACAATGCTTTATTCAACACATCATCTCCTCAGCAC  670

seq1  TTGCGATGGTGTGGGAAAATCTGGGATCCACAGTGCTGACTCATGACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGATGGTGTGGGAAAATCTGGGATCCACAGTGCTGACTCATGACACC  720

seq1  TGCTGATGGACGGGAATCCTCAAGTGTGGGTCCTTGGGCAGGATAACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGGACGGGAATCCTCAAGTGTGGGTCCTTGGGCAGGATAACCAA  770

seq1  CCTCTCTGTGTCTGGCTTCCCTCATCTAGAAAAATGACAGTCACCATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGTGTCTGGCTTCCCTCATCTAGAAAAATGACAGTCACCATAGC  820

seq1  GCCTACCCTAGGGTTCCTGGGGAGGAAAATACATTAATTTTCACCTAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCCTAGGGTTCCTGGGGAGGAAAATACATTAATTTTCACCTAGTG  870

seq1  CTTAAAATGGTGGCAGGCACTCAAAAATATTAGCTATTAATAGTGCTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGGTGGCAGGCACTCAAAAATATTAGCTATTAATAGTGCTTGT  920

seq1  TATTATTCTCAACATCTCACAAAGAATAAGTGTTTCCTGAATAGATGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCTCAACATCTCACAAAGAATAAGTGTTTCCTGAATAGATGTCT  970

seq1  GAGTGACTGAGTGTAGAATTC  1021
      |||||||||||||||||||||
seq2  GAGTGACTGAGTGTAGAATTC  991