BAC Information

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BAC

Clone NameB6Ng01-050J10
Chromosome9 (Build37)
Map Location 44,241,153 - 44,414,868
singlet/doubletdoublet
Overlap geneFoxr1, Upk2, Bcl9l, Blr1, Ddx6
Upstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84
Downstream geneLOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050J10.bB6Ng01-050J10.g
ACCDH874488DH874489
length1,108961
definitionDH874488|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J10, 5' end.DH874489|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,241,153 - 44,242,293)(44,413,899 - 44,414,868)
sequence
gaattcacgacctctggcagtcaatgctctttactgctgagccatccctc
cagtcctctttatacttgagattcagctacaattggttaatttcatccat
ggagaaacaagtctgtctgtctgtttacctacccacctacctacctatca
tctgccagcttccagaactcctactttcactcttggatctgaatcccagt
cccgcttagcctcatcctcagagatctcacacacacacaggtgttgctga
aggagactttaatagggcacggctgattcatcctgaaggtcaaagaggaa
gggcatcacatctgtaagagagttcagaggagcttgcaatcttgaccggc
tctgtccctggtctgctatgctatctcacagagcttaaggctccatggct
accacttttgaagtctttctgcttgctatggcagaatcctcttaattgat
aagccctcctactttttacccagctcaaaggccatttgagccaggattct
gggctgtgagcagagccagaggcaacctcagtttccctattccttgaaca
caattcccactctcatgggaggtctcataacttagagggtctcaatcacg
cctgtcctgcttcctgcagaagtcttgagagtatgatccagaaaggcatc
tagcctagagtctgggcctcgggtcccccacccctgtgctcaggcatgac
aaggcttcacacctggctggctcatgcactgttggatactttgcagctga
gtggaagccaaggtgcgggcctccttggaaaagcggcggtgtccctcctc
agtcaacttccagaggcaggatcgaggcccggtgctggcctcgacgccct
gccgactggccggcactttctcaagctgtctcggaactgagattgtgacg
gactgtgttcttccagcttccgggctgtccggaaaaagaaagtgctctct
gtggacagagagagtgaagacagtgtgcacccctgaaaaggactcactgg
ggtctgttcttccaggcaggagctcagcttctctcagggggaagcagaca
gctgtctggattgctctttgcggcggaaccctctcagcttagacatcgtt
tctttttt
agtcctgccacctttaaaagtcattacgtttaattgcattaagacttgaa
atatcactcaatttacttaatgtacatctagatttgaccaagacaagtta
ttaactttttttctatttctgacagaaaccaaaaaccttaaaacgagaag
acttttcaaaaaaaaagttgaaagctgttagtgctgccttttaatacaac
acttttcaaaataaagttcaaaggtgggggcggggagtcctgtagttaag
ggggaaagaaataccagagagttaaacttacaggtttaataaaattctcc
caaatcacctagaatacagcgtctaattaacagttattttaagaaagagt
tggtcaacctcctctactttaaattgttccccaaatggaattctcaaaat
ttggtaaataaaatattactaaggacttgtaagtataagtccaactcctt
cagttttattttgtaacccccttacatttcactggcacccgaaacactag
cttaattagtactggttatctttgcctcaaaccaagtatcccaaatccat
aatttagaagtcaaaagatatctcaagttaaatacatcaacttgctcaca
aatgcttctatcacattaaattgtttatttgttatctcaataggtatttt
ctgtattgacagcatacgatcaacagtatcaggtccgtcaaacaggaagg
cttactgtttgtacagcactaagaggatgaagggggcaacctctgaatcc
taaccgacaccatcagtactgtcaatcaagcacagtaaacctccctagcg
ccttaaaacccagagacttcgataactgctccttccagaaacggatacct
gcactgcagctttatggctcagtgggaaatttttcgtcctaccccttccc
aatttagatttgcagtatatcctaacaaacacgaggacataagacttagt
tggaggagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44241153_44242293
seq2: B6Ng01-050J10.b_45_1152

seq1  GAATTCACGACCTCTGGCAGTCAATGCTCTTTACTGCTGAGCCATCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGACCTCTGGCAGTCAATGCTCTTTACTGCTGAGCCATCCCTC  50

seq1  CAGTCCTCTTTATACTTGAGATTCAGCTACAATTGGTTAATTTCATCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCTTTATACTTGAGATTCAGCTACAATTGGTTAATTTCATCCAT  100

seq1  GGAGAAACAAGTCTGTCTGTCTGTTTACCTACCCACCTACCTACCTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACAAGTCTGTCTGTCTGTTTACCTACCCACCTACCTACCTATCA  150

seq1  TCTGCCAGCTTCCAGAACTCCTACTTTCACTCTTGGATCTGAATCCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGCTTCCAGAACTCCTACTTTCACTCTTGGATCTGAATCCCAGT  200

seq1  CCCGCTTAGCCTCATCCTCAGAGATCTCACACACACACAGGTGTTGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTAGCCTCATCCTCAGAGATCTCACACACACACAGGTGTTGCTGA  250

seq1  AGGAGACTTTAATAGGGCACGGCTGATTCATCCTGAAGGTCAAAGAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTTTAATAGGGCACGGCTGATTCATCCTGAAGGTCAAAGAGGAA  300

seq1  GGGCATCACATCTGTAAGAGAGTTCAGAGGAGCTTGCAATCTTGACCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCACATCTGTAAGAGAGTTCAGAGGAGCTTGCAATCTTGACCGGC  350

seq1  TCTGTCCCTGGTCTGCTATGCTATCTCACAGAGCTTAAGGCTCCATGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTGGTCTGCTATGCTATCTCACAGAGCTTAAGGCTCCATGGCT  400

seq1  ACCACTTTTGAAGTCTTTCTGCTTGCTATGGCAGAATCCTCTTAATTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTTGAAGTCTTTCTGCTTGCTATGGCAGAATCCTCTTAATTGAT  450

seq1  AAGCCCTCCTACTTTTTACCCAGCTCAAAGGCCATTTGAGCCAGGATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTCCTACTTTTTACCCAGCTCAAAGGCCATTTGAGCCAGGATTCT  500

seq1  GGGCTGTGAGCAGAGCCAGAGGCAACCTCAGTTTCCCTATTCCTTGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGAGCAGAGCCAGAGGCAACCTCAGTTTCCCTATTCCTTGAACA  550

seq1  CAATTCCCACTCTCATGGGAGGTCTCATAACTTAGAGGGTCTCAATCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCACTCTCATGGGAGGTCTCATAACTTAGAGGGTCTCAATCACG  600

seq1  CCTGTCCTGCTTCCTGCAGAAGTCTTGAGAGTATGATCCAGAAAGGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTGCTTCCTGCAGAAGTCTTGAGAGTATGATCCAGAAAGGCATC  650

seq1  TAGCCTAGAGTCTGGGCCTCGGGTCCCCCACCCCTGTGCTCAGGCATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGAGTCTGGGCCTCGGGTCCCCCACCCCTGTGCTCAGGCATGAC  700

seq1  AAGGCTTCACACCTGGCTGGCTCATGCACTGTTGGATACTTTGCAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCACACCTGGCTGGCTCATGCACTGTTGGATACTTTGCAGCTGA  750

seq1  GTGGAAGCCAAGGTGCGGGCCTCCTTGGAAAAGCGGCGGTGTCCCTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCCAAGGTGCGGGCCTCCTTGGAAAAGCGGCGGTGTCCCTCCTC  800

seq1  AGTCAACTTCCAGAGGCAGGATCGAGGCCCGGTGCTGGCCTCGACGCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACTTCCAGAGGCAGGATCGAGGCCCGGTGCTGGCCTCGACGCCCT  850

seq1  GCCGACTGGCCGGCACTTTCTCAAAGCTGTCTCGGAAACTGAGATTGTGA  900
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  GCCGACTGGCCGGCACTTTCTC-AAGCTGTCTCGG-AACTGAGATTGTGA  898

seq1  CGGACTGTGTTCTTCCAGGCTTCCGGGGCTGTCCGGAAAAAAGGAAAGTG  950
      ||||||||||||||||| |||||| ||||||||||||||||  |||||||
seq2  CGGACTGTGTTCTTCCA-GCTTCC-GGGCTGTCCGGAAAAA--GAAAGTG  944

seq1  CTCTCTGTGGACAAGGAGGAAGAGTGAAGACAGGTGTGGCACCCCTGAAA  1000
      |||||||||||||  |||  |||||||||||| |||| ||||||||||||
seq2  CTCTCTGTGGACA--GAG--AGAGTGAAGACA-GTGT-GCACCCCTGAAA  988

seq1  AGGACTCACTGGGGTCCTTGTTCTTCCCCAGGGCCAGGAGCCTCAGCTTC  1050
      ||||||||||||||||  |||||||  |||||  |||||| |||||||| 
seq2  AGGACTCACTGGGGTC--TGTTCTT--CCAGG--CAGGAG-CTCAGCTT-  1030

seq1  CTCTCAGGGGGAAGCAGGACAGGCTGGTCTGGAATTGCTCTTTGCCGGCA  1100
      |||||||||||||||| |||| ||| |||||| ||||||||||| |||| 
seq2  CTCTCAGGGGGAAGCA-GACA-GCT-GTCTGG-ATTGCTCTTTG-CGGCG  1075

seq1  GAACCACATCTCAGCCTATGAACCATCGGTTTTTCTTTTTT  1141
      ||||  | ||||||| || ||  |||||   ||||||||||
seq2  GAAC--CCTCTCAGCTTA-GA--CATCG---TTTCTTTTTT  1108

seq1: chr9_44413899_44414868
seq2: B6Ng01-050J10.g_76_1036 (reverse)

seq1  GGGCTCCTCCCAACTAAGTCTTATGTTCCTTCGTGGTTTTGTTTTAGGAA  50
      |||||||| |||||||||||||||||  | |||||  ||||  ||||| |
seq2  GGGCTCCT-CCAACTAAGTCTTATGT--CCTCGTG--TTTG--TTAGG-A  42

seq1  TATAACTTGCAAATCTAAATTGGGAAGGGGTAGGACGAAAAATTTCCCAC  100
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  TATA--CTGCAAATCTAAATTGGGAAGGGGTAGGACGAAAAATTTCCCAC  90

seq1  TGAGCCATAAAGCTGCAGTGCAGGTATCCGTTTCTGGAGGGAGCAGTTAT  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAGCCATAAAGCTGCAGTGCAGGTATCCGTTTCTGGAAGGAGCAGTTAT  140

seq1  CGAAGTCTCTGGG-TTTAAGGCGCTAGGAGGTTTTACTGTGCTTGATTGA  199
      ||||||||||||| ||||||||||||||  | ||||||||||||||||||
seq2  CGAAGTCTCTGGGTTTTAAGGCGCTAGGGAGGTTTACTGTGCTTGATTGA  190

seq1  CAGTACTGATGGTGTCGGTTAGGATTCAGAGGTTGCCCCCTTCATCCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGATGGTGTCGGTTAGGATTCAGAGGTTGCCCCCTTCATCCTCT  240

seq1  TAGTGCTGTACAAACAGTAAGCCTTCCTGTTTGACGGACCTGATACTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGTACAAACAGTAAGCCTTCCTGTTTGACGGACCTGATACTGTT  290

seq1  GATCGTATGCTGTCAATACAGAAAATACCTATTGAGATAACAAATAAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTATGCTGTCAATACAGAAAATACCTATTGAGATAACAAATAAACA  340

seq1  ATTTAATGTGATAGAAGCATTTGTGAGCAAGTTGATGTATTTAACTTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGTGATAGAAGCATTTGTGAGCAAGTTGATGTATTTAACTTGAG  390

seq1  ATATCTTTTGACTTCTAAATTATGGATTTGGGATACTTGGTTTGAGGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTGACTTCTAAATTATGGATTTGGGATACTTGGTTTGAGGCAA  440

seq1  AGATAACCAGTACTAATTAAGCTAGTGTTTCGGGTGCCAGTGAAATGTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCAGTACTAATTAAGCTAGTGTTTCGGGTGCCAGTGAAATGTAA  490

seq1  GGGGGTTACAAAATAAAACTGAAGGAGTTGGACTTATACTTACAAGTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTACAAAATAAAACTGAAGGAGTTGGACTTATACTTACAAGTCCT  540

seq1  TAGTAATATTTTATTTACCAAATTTTGAGAATTCCATTTGGGGAACAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATATTTTATTTACCAAATTTTGAGAATTCCATTTGGGGAACAATT  590

seq1  TAAAGTAGAGGAGGTTGACCAACTCTTTCTTAAAATAACTGTTAATTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGAGGAGGTTGACCAACTCTTTCTTAAAATAACTGTTAATTAGA  640

seq1  CGCTGTATTCTAGGTGATTTGGGAGAATTTTATTAAACCTGTAAGTTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTATTCTAGGTGATTTGGGAGAATTTTATTAAACCTGTAAGTTTAA  690

seq1  CTCTCTGGTATTTCTTTCCCCCTTAACTACAGGACTCCCCGCCCCCACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGTATTTCTTTCCCCCTTAACTACAGGACTCCCCGCCCCCACCT  740

seq1  TTGAACTTTATTTTGAAAAGTGTTGTATTAAAAGGCAGCACTAACAGCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTATTTTGAAAAGTGTTGTATTAAAAGGCAGCACTAACAGCTT  790

seq1  TCAACTTTTTTTTTGAAAAGTCTTCTCGTTTTAAGGTTTTTGGTTTCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTTTTTTTTGAAAAGTCTTCTCGTTTTAAGGTTTTTGGTTTCTGT  840

seq1  CAGAAATAGAAAAAAAGTTAATAACTTGTCTTGGTCAAATCTAGATGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAGAAAAAAAGTTAATAACTTGTCTTGGTCAAATCTAGATGTAC  890

seq1  ATTAAGTAAATTGAGTGATATTTCAAGTCTTAATGCAATTAAACGTAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAAATTGAGTGATATTTCAAGTCTTAATGCAATTAAACGTAATG  940

seq1  ACTTTTAAAGGTGGCAGGACT  970
      |||||||||||||||||||||
seq2  ACTTTTAAAGGTGGCAGGACT  961