BAC Information

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BAC

Clone NameB6Ng01-051G24
Chromosome9 (Build37)
Map Location 108,299,254 - 108,445,006
singlet/doubletdoublet
Overlap gene1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1
Upstream geneCacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859
Downstream geneImpdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051G24.bB6Ng01-051G24.g
ACCDH875079DH875080
length1,124982
definitionDH875079|Mus musculus domesticus DNA, BAC clone: B6Ng01-051G24, 5' end.DH875080|Mus musculus domesticus DNA, BAC clone: B6Ng01-051G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,443,869 - 108,445,006)(108,299,254 - 108,300,232)
sequence
gaattcttgttatttaagtaaattaggctaaagtgaaaacattcaatggg
aacccagttcaaacatgttcatgtgaagatgtttcctaccttctgtatac
acaggaaaatgtagtagagtacatctgggtcatagggttcaccttctcca
ttccgagcttctcgtgtcattaaacaaaggccataattcaattcagccac
agcagaggagatcagatcttcctgaaatcgtagcaactgtcgccctgcaa
cacaagtcctaagggtgaatgggagtcttggcaacagtgatgtcctaact
tgttactcacattgttaaaaggagggttcagagaggatgttgcccaccag
tgttcaggctaggaatgtccacttacatctgtgatctgaacttccctatt
aatgcactaacatacgctattacaccaacgggtttcttttctgtaagtag
aaatatgtagaaaaccccagcaaccatgctgtactatgagcaaataaatg
aacccaaacaaagactggtttaaatacaactcactggcacctcccaggtc
ttcccaaaagacatttttctttggtgcctttccttgaagctaactaaaaa
catagggatccaaaaatctggtcttgggcaatcccataaatcttgctcac
tcatgatgtgaagactagacactgctcatcatgacacaaagtatacttcc
aagtatattctccagtccttaaggccaggggtgctacctgcctgcattct
gttttacttgtacttacatttttgacacaccccatcatcctctccctccc
aaacactcactcccaatgggggccaatctgttttgagcatccttttctag
ttcagcattcttggtctgagcccagtttttccatacttcaagcccttctt
ctggcttcaaagaatttggaagcaaaagctctggtgaacgctgtggttgt
gactgtggctcaacttcagcaacctgaacagtctgtgcctttgagaggga
aatcatgagaattgtcagtatttcattagacttttagtaaaaataacagc
aatgaactaactgctatttcattggaaaaacaaacaacaaccaaccattt
ctgtgttccgtttcatgctttgga
gaattctggggtaaagggaaggtatcaggcccaccttatattggtgctcg
cttgtctgtgctgggacaggaattctgcagttggcagtgctcttctattt
atgtgtgtctatgggcttgctagcttgtggtagctatcaggtatcaggct
agacaggttctttcatgagtacatcagttttgtggtttttatcttatgcc
tggactgtcctcaggaacttctaagtagagctgtaaagccgtatgtcctt
tttgtccttgttgttttaagaccatacaagtatccgaactattgaagaat
tggctggaaaactagaatttgaaaatgaattgaaccgtgtgtgtggacac
tgccaagattcacccttcaaggaggaagcctgggccctgcttgtggatga
gagtcctcagaaggctctggatgctgaccctggtagcctcaagcaggctt
tggatgatcagaatatagttgagactgttctggacttggaagaagactac
aacttgatgacttcttttaaataccaaatagagtgaggagagtggatgtc
agcagccacagtggttaccagaacaagtcttcacgaggggttggcagagc
ccaaattgccacaccttgtttaatttctgctgaatcccattttgagctga
gagcccaggttttagttctgttattttgaaatgtttgaaaagtttttttt
ggacttgacattttttttaaagtgtattcttggttagtgttgaatatata
cagtccccaggataggttatagggttgtgcctctgctctttgtccttgta
ttcttttatatgaatccctggaaaaataaaaatccaggaaccataaaaag
ggtgggtttattacctgggctagcccatcacaggtaagctccttctcaaa
agagccaggctcaagcagaagtttgacttggggccctctcctgcctgtgt
actctaattctcctcacacagtgcacacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108443869_108445006
seq2: B6Ng01-051G24.b_43_1166 (reverse)

seq1  TCCAAAGCATGAAAACGGGACAGCAAGAATTGGTTTTGGTTGTTGTTTTT  50
      ||||||||||| |||||| |||   |||| |||  ||||||||||  |||
seq2  TCCAAAGCATG-AAACGGAACA--CAGAAATGG--TTGGTTGTTG--TTT  43

seq1  GTTTTTCCCAATTGAATAGCAGTTAAGTTTCATTTGCTGGTATTTTTACT  100
      |||||| |||||  |||||||||||   |||| |||||| ||||||||||
seq2  GTTTTT-CCAATGAAATAGCAGTTA--GTTCA-TTGCTGTTATTTTTACT  89

seq1  AAAAGTCCTAATGAAAAATACTGACAATTCTCATGATTTCCCTCTCATAG  150
      |||||| ||||||  |||||||||||||||||||||||||||||||| ||
seq2  AAAAGT-CTAATG--AAATACTGACAATTCTCATGATTTCCCTCTCAAAG  136

seq1  GCACAGACTGTTCAGGTTGCTGAAGTTGAGCCACAGTCACAACCACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCACAGACTGTTCAGGTTGCTGAAGTTGAGCCACAGTCACAACCACAGCG  186

seq1  TTCACCAGAGCTTTTGCTTCCAAATTCTTTGAAGCCAGAAGAAGGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGAGCTTTTGCTTCCAAATTCTTTGAAGCCAGAAGAAGGGCTTG  236

seq1  AAGTATGGAAAAACTGGGCTCAGACCAAGAATGCTGAACTAGAAAAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGAAAAACTGGGCTCAGACCAAGAATGCTGAACTAGAAAAGGAT  286

seq1  GCTCAAAACAGATTGGCCCCCATTGGGAGTGAGTGTTTGGGAGGGAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAACAGATTGGCCCCCATTGGGAGTGAGTGTTTGGGAGGGAGAGG  336

seq1  ATGATGGGGTGTGTCAAAAATGTAAGTACAAGTAAAACAGAATGCAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGGTGTGTCAAAAATGTAAGTACAAGTAAAACAGAATGCAGGCA  386

seq1  GGTAGCACCCCTGGCCTTAAGGACTGGAGAATATACTTGGAAGTATACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCACCCCTGGCCTTAAGGACTGGAGAATATACTTGGAAGTATACTT  436

seq1  TGTGTCATGATGAGCAGTGTCTAGTCTTCACATCATGAGTGAGCAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATGATGAGCAGTGTCTAGTCTTCACATCATGAGTGAGCAAGATT  486

seq1  TATGGGATTGCCCAAGACCAGATTTTTGGATCCCTATGTTTTTAGTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGATTGCCCAAGACCAGATTTTTGGATCCCTATGTTTTTAGTTAGC  536

seq1  TTCAAGGAAAGGCACCAAAGAAAAATGTCTTTTGGGAAGACCTGGGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAAAGGCACCAAAGAAAAATGTCTTTTGGGAAGACCTGGGAGGT  586

seq1  GCCAGTGAGTTGTATTTAAACCAGTCTTTGTTTGGGTTCATTTATTTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAGTTGTATTTAAACCAGTCTTTGTTTGGGTTCATTTATTTGCT  636

seq1  CATAGTACAGCATGGTTGCTGGGGTTTTCTACATATTTCTACTTACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACAGCATGGTTGCTGGGGTTTTCTACATATTTCTACTTACAGAA  686

seq1  AAGAAACCCGTTGGTGTAATAGCGTATGTTAGTGCATTAATAGGGAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCCGTTGGTGTAATAGCGTATGTTAGTGCATTAATAGGGAAGTT  736

seq1  CAGATCACAGATGTAAGTGGACATTCCTAGCCTGAACACTGGTGGGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACAGATGTAAGTGGACATTCCTAGCCTGAACACTGGTGGGCAAC  786

seq1  ATCCTCTCTGAACCCTCCTTTTAACAATGTGAGTAACAAGTTAGGACATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCTGAACCCTCCTTTTAACAATGTGAGTAACAAGTTAGGACATC  836

seq1  ACTGTTGCCAAGACTCCCATTCACCCTTAGGACTTGTGTTGCAGGGCGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGCCAAGACTCCCATTCACCCTTAGGACTTGTGTTGCAGGGCGAC  886

seq1  AGTTGCTACGATTTCAGGAAGATCTGATCTCCTCTGCTGTGGCTGAATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTACGATTTCAGGAAGATCTGATCTCCTCTGCTGTGGCTGAATTG  936

seq1  AATTATGGCCTTTGTTTAATGACACGAGAAGCTCGGAATGGAGAAGGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGCCTTTGTTTAATGACACGAGAAGCTCGGAATGGAGAAGGTGA  986

seq1  ACCCTATGACCCAGATGTACTCTACTACATTTTCCTGTGTATACAGAAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTATGACCCAGATGTACTCTACTACATTTTCCTGTGTATACAGAAGG  1036

seq1  TAGGAAACATCTTCACATGAACATGTTTGAACTGGGTTCCCATTGAATGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACATCTTCACATGAACATGTTTGAACTGGGTTCCCATTGAATGT  1086

seq1  TTTCACTTTAGCCTAATTTACTTAAATAACAAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTTAGCCTAATTTACTTAAATAACAAGAATTC  1124

seq1: chr9_108299254_108300232
seq2: B6Ng01-051G24.g_67_1048

seq1  GAATTCTGGGGTAAAGGGAAGGTATCAGGCCCACCTTATATTGGTGCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGTAAAGGGAAGGTATCAGGCCCACCTTATATTGGTGCTCG  50

seq1  CTTGTCTGTGCTGGGACAGGAATTCTGCAGTTGGCAGTGCTCTTCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTGCTGGGACAGGAATTCTGCAGTTGGCAGTGCTCTTCTATTT  100

seq1  ATGTGTGTCTATGGGCTTGCTAGCTTGTGGTAGCTATCAGGTATCAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCTATGGGCTTGCTAGCTTGTGGTAGCTATCAGGTATCAGGCT  150

seq1  AGACAGGTTCTTTCATGAGTACATCAGTTTTGTGGTTTTTATCTTATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTTCTTTCATGAGTACATCAGTTTTGTGGTTTTTATCTTATGCC  200

seq1  TGGACTGTCCTCAGGAACTTCTAAGTAGAGCTGTAAAGCCGTATGTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTCCTCAGGAACTTCTAAGTAGAGCTGTAAAGCCGTATGTCCTT  250

seq1  TTTGTCCTTGTTGTTTTAAGACCATACAAGTATCCGAACTATTGAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTGTTGTTTTAAGACCATACAAGTATCCGAACTATTGAAGAAT  300

seq1  TGGCTGGAAAACTAGAATTTGAAAATGAATTGAACCGTGTGTGTGGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGAAAACTAGAATTTGAAAATGAATTGAACCGTGTGTGTGGACAC  350

seq1  TGCCAAGATTCACCCTTCAAGGAGGAAGCCTGGGCCCTGCTTGTGGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGATTCACCCTTCAAGGAGGAAGCCTGGGCCCTGCTTGTGGATGA  400

seq1  GAGTCCTCAGAAGGCTCTGGATGCTGACCCTGGTAGCCTCAAGCAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCAGAAGGCTCTGGATGCTGACCCTGGTAGCCTCAAGCAGGCTT  450

seq1  TGGATGATCAGAATATAGTTGAGACTGTTCTGGACTTGGAAGAAGACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATCAGAATATAGTTGAGACTGTTCTGGACTTGGAAGAAGACTAC  500

seq1  AACTTGATGACTTCTTTTAAATACCAAATAGAGTGAGGAGAGTGGATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATGACTTCTTTTAAATACCAAATAGAGTGAGGAGAGTGGATGTC  550

seq1  AGCAGCCACAGTGGTTACCAGAACAAGTCTTCACGAGGGGTTGGCAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCACAGTGGTTACCAGAACAAGTCTTCACGAGGGGTTGGCAGAGC  600

seq1  CCAAATTGCCACACCTTGTTTAATTTCTGCTGAATCCCATTTTGAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGCCACACCTTGTTTAATTTCTGCTGAATCCCATTTTGAGCTGA  650

seq1  GAGCCCAGGTTTTAGTTCTGTTATTTTGAAATGTTTGAAAAGTTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGGTTTTAGTTCTGTTATTTTGAAATGTTTGAAAAGTTTTTTTT  700

seq1  GGACTTGACATTTTTTTTAAAGTGTATTCTTGGTTAGTGTTGAATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGACATTTTTTTTAAAGTGTATTCTTGGTTAGTGTTGAATATATA  750

seq1  CAGTCCCCAGGATAGGTTATA-GGTTGTGCCTCTGCTCTTTGTCCTTGTA  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGTCCCCAGGATAGGTTATAGGGTTGTGCCTCTGCTCTTTGTCCTTGTA  800

seq1  TTCTTTTATATGAATCCCTGGAAAAATAAAAATCCAGGAACCATAAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTATATGAATCCCTGGAAAAATAAAAATCCAGGAACCATAAAAAG  850

seq1  GGTGGGTTTATTACCTGGGGCTAGCCCATCACAGGTAAGCTCC-TCTCAG  898
      |||||||||||||||| |||||||||||||||||||||||||| ||||| 
seq2  GGTGGGTTTATTACCT-GGGCTAGCCCATCACAGGTAAGCTCCTTCTCAA  899

seq1  AAGAGCCAGGCTCAGGCAGAAGTTTGACTT-GGGCCCTCTCCTGCCTGTG  947
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  AAGAGCCAGGCTCAAGCAGAAGTTTGACTTGGGGCCCTCTCCTGCCTGTG  949

seq1  TACTCT-ATTCTCCTCACACAGTGCACACACTG  979
      |||||| ||||||||||||||||||||||||||
seq2  TACTCTAATTCTCCTCACACAGTGCACACACTG  982