BAC Information

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BAC

Clone NameB6Ng01-051H08
Chromosome9 (Build37)
Map Location 65,377,835 - 65,497,476
singlet/doubletdoublet
Overlap genePlekhq1, Pif1, LOC100041121, Rbpms2
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a
Downstream geneOaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051H08.bB6Ng01-051H08.g
ACCDH875093DH875094
length9311,047
definitionDH875093|Mus musculus domesticus DNA, BAC clone: B6Ng01-051H08, 5' end.DH875094|Mus musculus domesticus DNA, BAC clone: B6Ng01-051H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,377,835 - 65,378,765)(65,496,428 - 65,497,476)
sequence
gaattctgcaggaaggcctctgggttcactgttggcctctgaatcagcaa
tgtcacaagaagggctgtcaagatggttcatcagggaaaggcactgccac
caagccttataatgagagtgccaggaaggagaaagaaaagttattcccac
aagttatgaagttatgtactctctctctctctctttctctccttcctccc
ttcctcctccctccctttctctctctgtctctgtccctgtctctctctct
cacacacaaacacacaaaataaacacataaagaagaaaaaaaagaaagtt
ttatttagaggcacaagaaacagctatagtgtaacatgcatgtgattcca
gcactctgaggctggggcaagtcttgagttttaagccagtctggtctaca
tagcaggtctttgtctcaagggggttggagatcatagataatagctaagt
taaagaactgatttaagtgttcaagaccaaaggaatggataaggaaaata
tacaaaatgttgcaagtgtacaaaatagaaaaataaagttatagtggctc
caggaaaatggacacaaatggaatcatattaggtaattaagccagttcca
ggaagataaatattacaggttttctttccttttttccttcacttttaaaa
aaggtgtgtgtgtgtgagtgtgtacttgactttgtgtatgcacccacacc
acatgtaagcaagtgcctaatgatgcctgagagggcatcagatggcctgg
acctagactaataggaggttgtgagccaccccatgtggatgctggtcctc
tgccagggcaatgagtgctcttaactactgagccacctctctagccctgc
tttctctttttcatgattttctagattttatatagttatatacaatcata
tgtgtatgtgtgtatgtttgagtgtgtgtat
gaattcttcacatggcaaagtctgttaagattctttaccatctctacttt
acagatgagtaaacagaggttcggcaggaccaaaaaactggcataagagg
agagtcagcagaaccatcagacagagccagatctgtgaccccagtttctg
aaacacctttctacagttcaatccacactagagatgaactcttgctgctc
agccctgatcctgggctctgggggctcctcgatcctgactcaccttgaat
ggacggaagagcaggtagagttctctaggtttaatatccacagggaggcc
actgacaaacagtgtgcggacctagagacagagaccacagtggtcagggt
tgttcatttatgaggtagggtttacagaggaaactgagtgtattccaggc
ctcctgtacacacacagtttcatagcttcgagtctatcaaagcttccttt
aggcttcacacaacacctgagcacatctccagacaacagacgcaaggtgg
aggagcccgtgtgtaaatgtaccatccttttccagacccagcaaagacca
cctctgcacctgagtgagagcacccaactccgtaaatgagcacataaaaa
tgtgatggttttgcgcttgctacacagtcataagtatcagagtttgaatt
tgagtacccacatattaagctggacatcccaggaacacttgtaaccacag
ctctgagaaagacgaagacaagaggatgccggagctggctggcttccagc
ctaggtccacaaagttagtggagcgacagaggaaggcactaactaacacc
ctcttctggccactactcacctcgtggacacagactcatctatgtgcgag
catacatgtgcgcgtacacacgcacgtgcacccacacacgcacgtgcacc
cacacccacaaataaatctttaaaaaaaaaaaaaagctctattttgccag
aagatactcataagcccttggtggtaaagctctggtcgggagaggcaaga
ctcacaagtagtgctcctgcagacaggggggtggggtgaaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65377835_65378765
seq2: B6Ng01-051H08.b_42_972

seq1  GAATTCTGCAGGAAGGCCTCTGGGTTCACTGTTGGCCTCTGAATCAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGAAGGCCTCTGGGTTCACTGTTGGCCTCTGAATCAGCAA  50

seq1  TGTCACAAGAAGGGCTGTCAAGATGGTTCATCAGGGAAAGGCACTGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAAGAAGGGCTGTCAAGATGGTTCATCAGGGAAAGGCACTGCCAC  100

seq1  CAAGCCTTATAATGAGAGTGCCAGGAAGGAGAAAGAAAAGTTATTCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTATAATGAGAGTGCCAGGAAGGAGAAAGAAAAGTTATTCCCAC  150

seq1  AAGTTATGAAGTTATGTACTCTCTCTCTCTCTCTTTCTCTCCTTCCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGAAGTTATGTACTCTCTCTCTCTCTCTTTCTCTCCTTCCTCCC  200

seq1  TTCCTCCTCCCTCCCTTTCTCTCTCTGTCTCTGTCCCTGTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCCTCCCTTTCTCTCTCTGTCTCTGTCCCTGTCTCTCTCTCT  250

seq1  CACACACAAACACACAAAATAAACACATAAAGAAGAAAAAAAAGAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAACACACAAAATAAACACATAAAGAAGAAAAAAAAGAAAGTT  300

seq1  TTATTTAGAGGCACAAGAAACAGCTATAGTGTAACATGCATGTGATTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGAGGCACAAGAAACAGCTATAGTGTAACATGCATGTGATTCCA  350

seq1  GCACTCTGAGGCTGGGGCAAGTCTTGAGTTTTAAGCCAGTCTGGTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGAGGCTGGGGCAAGTCTTGAGTTTTAAGCCAGTCTGGTCTACA  400

seq1  TAGCAGGTCTTTGTCTCAAGGGGGTTGGAGATCATAGATAATAGCTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGTCTTTGTCTCAAGGGGGTTGGAGATCATAGATAATAGCTAAGT  450

seq1  TAAAGAACTGATTTAAGTGTTCAAGACCAAAGGAATGGATAAGGAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTGATTTAAGTGTTCAAGACCAAAGGAATGGATAAGGAAAATA  500

seq1  TACAAAATGTTGCAAGTGTACAAAATAGAAAAATAAAGTTATAGTGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGTTGCAAGTGTACAAAATAGAAAAATAAAGTTATAGTGGCTC  550

seq1  CAGGAAAATGGACACAAATGGAATCATATTAGGTAATTAAGCCAGTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATGGACACAAATGGAATCATATTAGGTAATTAAGCCAGTTCCA  600

seq1  GGAAGATAAATATTACAGGTTTTCTTTCCTTTTTTCCTTCACTTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATAAATATTACAGGTTTTCTTTCCTTTTTTCCTTCACTTTTAAAA  650

seq1  AAGGTGTGTGTGTGTGAGTGTGTACTTGACTTTGTGTATGCACCCACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGTGTGTGTGAGTGTGTACTTGACTTTGTGTATGCACCCACACC  700

seq1  ACATGTAAGCAAGTGCCTAATGATGCCTGAGAGGGCATCAGATGGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAGCAAGTGCCTAATGATGCCTGAGAGGGCATCAGATGGCCTGG  750

seq1  ACCTAGACTAATAGGAGGTTGTGAGCCACCCCATGTGGATGCTGGTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGACTAATAGGAGGTTGTGAGCCACCCCATGTGGATGCTGGTCCTC  800

seq1  TGCCAGGGCAATGAGTGCTCTTAACTACTGAGCCACCTCTCTAGCCCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGCAATGAGTGCTCTTAACTACTGAGCCACCTCTCTAGCCCTGC  850

seq1  TTTCTCTTTTTCATGATTTTCTAGATTTTATATAGTTATATACAATCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTTCATGATTTTCTAGATTTTATATAGTTATATACAATCATA  900

seq1  TGTGTATGTGTGTATGTTTGAGTGTGTGTAT  931
      |||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTGTATGTTTGAGTGTGTGTAT  931

seq1: chr9_65496428_65497476
seq2: B6Ng01-051H08.g_66_1112 (reverse)

seq1  ACTCCCCTTCCACCCA-CCCCCTGTCTGCA-GAGCACTACTTGTGTGTCT  48
      ||||||||||  |||| ||||||||||||| |||||||||||||| ||| 
seq2  ACTCCCCTTCACCCCACCCCCCTGTCTGCAGGAGCACTACTTGTGAGTC-  49

seq1  TTGCCTCTCCCGACCAGAGCTTTACCACCAAGGGCTTATGAGTTATCTTC  98
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGCCTCTCCCGACCAGAGCTTTACCACCAAGGGCTTATGAG-TATCTTC  98

seq1  TGGCAAAATAGAGCTTTTTTTTTTTTTTTTAAAGATTTATTTGTGGGTGT  148
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TGGCAAAATAGAGC--TTTTTTTTTTTTTTAAAGATTTATTTGTGGGTGT  146

seq1  GGGTGCACGTGCGTGTGTGGGTGCACGTGCGTGTGTACGCGCACATGTAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCACGTGCGTGTGTGGGTGCACGTGCGTGTGTACGCGCACATGTAT  196

seq1  GCTCGCACATAGATGAGTCTGTGTCCACGAGGTGAGTAGTGGCCAGAAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCACATAGATGAGTCTGTGTCCACGAGGTGAGTAGTGGCCAGAAGA  246

seq1  GGGTGTTAGTTAGTGCCTTCCTCTGTCGCTCCACTAACTTTGTGGACCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTAGTTAGTGCCTTCCTCTGTCGCTCCACTAACTTTGTGGACCTA  296

seq1  GGCTGGAAGCCAGCCAGCTCCGGCATCCTCTTGTCTTCGTCTTTCTCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAGCCAGCCAGCTCCGGCATCCTCTTGTCTTCGTCTTTCTCAGA  346

seq1  GCTGTGGTTACAAGTGTTCCTGGGATGTCCAGCTTAATATGTGGGTACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTTACAAGTGTTCCTGGGATGTCCAGCTTAATATGTGGGTACTC  396

seq1  AAATTCAAACTCTGATACTTATGACTGTGTAGCAAGCGCAAAACCATCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAACTCTGATACTTATGACTGTGTAGCAAGCGCAAAACCATCAC  446

seq1  ATTTTTATGTGCTCATTTACGGAGTTGGGTGCTCTCACTCAGGTGCAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGTGCTCATTTACGGAGTTGGGTGCTCTCACTCAGGTGCAGAG  496

seq1  GTGGTCTTTGCTGGGTCTGGAAAAGGATGGTACATTTACACACGGGCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTTGCTGGGTCTGGAAAAGGATGGTACATTTACACACGGGCTCC  546

seq1  TCCACCTTGCGTCTGTTGTCTGGAGATGTGCTCAGGTGTTGTGTGAAGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTGCGTCTGTTGTCTGGAGATGTGCTCAGGTGTTGTGTGAAGCC  596

seq1  TAAAGGAAGCTTTGATAGACTCGAAGCTATGAAACTGTGTGTGTACAGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGCTTTGATAGACTCGAAGCTATGAAACTGTGTGTGTACAGGA  646

seq1  GGCCTGGAATACACTCAGTTTCCTCTGTAAACCCTACCTCATAAATGAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAATACACTCAGTTTCCTCTGTAAACCCTACCTCATAAATGAAC  696

seq1  AACCCTGACCACTGTGGTCTCTGTCTCTAGGTCCGCACACTGTTTGTCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGACCACTGTGGTCTCTGTCTCTAGGTCCGCACACTGTTTGTCAG  746

seq1  TGGCCTCCCTGTGGATATTAAACCTAGAGAACTCTACCTGCTCTTCCGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCCTGTGGATATTAAACCTAGAGAACTCTACCTGCTCTTCCGTC  796

seq1  CATTCAAGGTGAGTCAGGATCGAGGAGCCCCCAGAGCCCAGGATCAGGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGGTGAGTCAGGATCGAGGAGCCCCCAGAGCCCAGGATCAGGGC  846

seq1  TGAGCAGCAAGAGTTCATCTCTAGTGTGGATTGAACTGTAGAAAGGTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCAAGAGTTCATCTCTAGTGTGGATTGAACTGTAGAAAGGTGTT  896

seq1  TCAGAAACTGGGGTCACAGATCTGGCTCTGTCTGATGGTTCTGCTGACTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACTGGGGTCACAGATCTGGCTCTGTCTGATGGTTCTGCTGACTC  946

seq1  TCCTCTTATGCCAGTTTTTTGGTCCTGCCGAACCTCTGTTTACTCATCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTATGCCAGTTTTTTGGTCCTGCCGAACCTCTGTTTACTCATCTG  996

seq1  TAAAGTAGAGATGGTAAAGAATCTTAACAGACTTTGCCATGTGAAGAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGAGATGGTAAAGAATCTTAACAGACTTTGCCATGTGAAGAATT  1046

seq1  C  1049
      |
seq2  C  1047