BAC Information

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BAC

Clone NameB6Ng01-051O12
Chromosome9 (Build37)
Map Location 99,285,242 - 99,410,447
singlet/doubletdoublet
Overlap geneMras, LOC623534, Armc8
Upstream geneNmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e
Downstream geneDbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051O12.bB6Ng01-051O12.g
ACCDH875416DH875417
length9011,022
definitionDH875416|Mus musculus domesticus DNA, BAC clone: B6Ng01-051O12, 5' end.DH875417|Mus musculus domesticus DNA, BAC clone: B6Ng01-051O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,285,242 - 99,286,149)(99,409,415 - 99,410,447)
sequence
gaattcctttttgaactcagtaaacagtttcccatgaaaggcagaagggc
acatggcaagctgctgaggatgaaaaaaaaaaaaaaaagtcgggttcctt
ctctcagcaccatgctcccagaaatcacactcaaactcaaagtatattta
caaatacctcggccatttagctaggctcttctctgactctctataactta
aaataacccatttattctaatctactttctgccacgtaactggttatctg
tgctcgggtaccatgtgatcgtctcgtcacatcttccctggtgaagctcc
tgcctgccacttcccccagactccttctgtcttctggatgtcccaccccc
tattcctgccccctgccccccatcagatttattattgacaagtgccccat
ccgtacccacataagatagtctcctctctacaggctcctgcaggcattca
tacctgcatggccaccagtgtgcttcctctttgctttaggtttggctaag
cccaaggctgtgctctggaacaggtgggggtttccgtaaagaactaaaag
ctcgcagaactggcaaagattggggaagaggaaatactgcaggatctctg
attgtttctttattaatcagtaaagatacacaaatacttgataaaaatta
cttaaaaagctcgagcgtcaactgtatgtccaggcatcactctctctcct
cacacgacaactgccacctgctaatactgtaacgctaagggctcattgtt
tcaagtttctggcattgtgccaaacctgagccaaggtgtctctccaacca
tgtgggttgctaaacgagggacccctctgcagctctggactaagagaata
gctcttaggggctttggggttagagctggcatggtcattgggtcaggtct
c
gaattctacatgctttgacttggtccctttcaaagcttgggagcatggta
ttgggttctttaagggatacaatatagaacatggcgtattgcttttgcct
gtccaaccccttatctataaaacaatgcggcactccatgagactgtcagg
ggctagtcaccgctaactccttcactgttgacctggaaagtggtgcctgg
atttctaaccctttccctaaaaccttggaatcacatttttatcctcattt
tgatcatggttctcacccaaatgtcccctttacccctgcatagatgactt
ctggttagatcatgttgttcacatgacctttctggatgctcttttggtct
ggaattatatgttcatattctgattttgtatcatttttaccctcctatgg
aatggcaatcctgatgaagaaaatgaatcaagttctcaactttgagcttc
ctagaacgctgccaaggatctgctttataacatcttcatgtacaagtcta
cacctatagatgtcctagaaaggtcagtttgtgcctagagagaacgtatc
taagatatagccttactggaaaaacttaggaatgaagtgtgaggctacat
tccactgttacactggcgggtactatcagctcttcatcattctccctgat
ctgagacattgtcgagtaaaggctttggaggtcattccccaattcatacc
ataaccctcactcttcataaaggctatggtgcctacctggcttttattcc
agtttcacacattctgaccccctttaccccaaaatcctgtccttctatta
gaggctttgggagagtagatacagtgtcatagcaccacagtggatggtat
tagttcaccccaagtctgaagactgcaggagtcgctccgtcccactgttt
ccttgcgctgcaacccatgttcactactagacactcgtattgctgaataa
ttgaggccagtaatgctgcagaaactggattactactacctccctgtgtt
tggtatgtattctctcggtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99285242_99286149
seq2: B6Ng01-051O12.b_41_942

seq1  GGAATTCCATTTTGAACACAAGTAAACAGTTTCCCATGAAAGGCAGAAGG  50
      |||||||| |||||||| | ||||||||||||||||||||||||||||||
seq2  GGAATTCCTTTTTGAACTC-AGTAAACAGTTTCCCATGAAAGGCAGAAGG  49

seq1  GCACATGGCAAGCTGCTGAGGATGAAAAAAAAAAAAAAAAGTCTGGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCACATGGCAAGCTGCTGAGGATGAAAAAAAAAAAAAAAAGTCGGGTTCC  99

seq1  TTCTCTCAGCACCATGCTCCCAGAAATCACACTCAGACTCAAAGTATATT  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTCTCAGCACCATGCTCCCAGAAATCACACTCAAACTCAAAGTATATT  149

seq1  TACAAATACCTCGGCCATATAGCTAGGCTCTTCTCTGACTAGCTATAACT  200
      |||||||||||||||||| |||||||||||||||||||||  ||||||||
seq2  TACAAATACCTCGGCCATTTAGCTAGGCTCTTCTCTGACTCTCTATAACT  199

seq1  TAAAATAACCCATTTATTCTAATCTACTTTCTGCCACGTAGCTGGTTATC  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAAATAACCCATTTATTCTAATCTACTTTCTGCCACGTAACTGGTTATC  249

seq1  TGTGCTCGGGTACCATGTGATCGTCTCGTCACATCTTCCCTGGTGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCGGGTACCATGTGATCGTCTCGTCACATCTTCCCTGGTGAAGCT  299

seq1  CCTGCCTGCCACTTCCCCCAGACTCCTTCTGTCTTCTGGATGTCCCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGCCACTTCCCCCAGACTCCTTCTGTCTTCTGGATGTCCCACCC  349

seq1  CCTATTCCTG-CCACAGCATAGGCCATCAGATTTATTATTGACAGGTGCC  399
      |||||||||| || | ||     ||||||||||||||||||||| |||||
seq2  CCTATTCCTGCCCCCTGC--CCCCCATCAGATTTATTATTGACAAGTGCC  397

seq1  CCATCCGTACAGACATAAGATAGTCTCCTCTCTACAGGCTCCTGCAGGCA  449
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  CCATCCGTACCCACATAAGATAGTCTCCTCTCTACAGGCTCCTGCAGGCA  447

seq1  AAGATACCTGCATGGCCACCAGTGTGCTTCCTCTTTGCTTTAGGTTTGGC  499
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACCTGCATGGCCACCAGTGTGCTTCCTCTTTGCTTTAGGTTTGGC  497

seq1  TAAGCCCAAGGCTGTGCTCTGGAAGAGGTGGGTGTTTCAGTAAAGAACTA  549
      |||||||||||||||||||||||| ||||||| ||||| |||||||||||
seq2  TAAGCCCAAGGCTGTGCTCTGGAACAGGTGGGGGTTTCCGTAAAGAACTA  547

seq1  AAAGCTCGCAAAACGGGCAGTGTTTGGGGAAGAGGAAATAAGGCAGGATC  599
      |||||||||| ||| ||||  | |||||||||||||||||  ||||||||
seq2  AAAGCTCGCAGAACTGGCAAAGATTGGGGAAGAGGAAATACTGCAGGATC  597

seq1  TCTGATTGTTTCTTTATTAATAAGTAGAGATACACAAAGACTTGATAAAA  649
      ||||||||||||||||||||| |||| ||||||||||| |||||||||||
seq2  TCTGATTGTTTCTTTATTAATCAGTAAAGATACACAAATACTTGATAAAA  647

seq1  AGTACATAAAAGGCTCAAGCGTCAACAAGATGTCCAGGCATCACTCTCGC  699
      | ||| ||||| |||| |||||||||   ||||||||||||||||||| |
seq2  ATTACTTAAAAAGCTCGAGCGTCAACTGTATGTCCAGGCATCACTCTCTC  697

seq1  TCCTCACACGACAACTGCCACCTGCTAATACTGTCACGCAAAGGGCTCAT  749
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  TCCTCACACGACAACTGCCACCTGCTAATACTGTAACGCTAAGGGCTCAT  747

seq1  TGTTTCAAGTATCTGGCATTGTGGGTAAACCTGACCCAATGTGGACTCTC  799
      |||||||||| ||||||||||| |  |||||||| |||| || | |||||
seq2  TGTTTCAAGTTTCTGGCATTGT-GCCAAACCTGAGCCAAGGT-GTCTCTC  795

seq1  CAACCAGGTGGGCTGCTAAAAGGAGGGACCCCTCTGCGGCTCTGGACTTA  849
      |||||| ||||| |||| ||| ||||||||||||||| |||||||||| |
seq2  CAACCATGTGGGTTGCT-AAACGAGGGACCCCTCTGCAGCTCTGGACTAA  844

seq1  GTGTGATGGCTCTGAGGGGCTTTGGGGTTAGAGCTGGCATGGTCAGTGGG  899
      | |  || ||||| ||||||||||||||||||||||||||||||| ||||
seq2  GAG-AATAGCTCTTAGGGGCTTTGGGGTTAGAGCTGGCATGGTCATTGGG  893

seq1  TCATGTCTC  908
      ||| |||||
seq2  TCAGGTCTC  902

seq1: chr9_99409415_99410447
seq2: B6Ng01-051O12.g_67_1088 (reverse)

seq1  TAGACCGAGAGATATACACACCAAAC-CAGGGAAGGTAATTATTAATCCA  49
      |||||||||||| ||||| ||||||| ||||| |||| | || |||||||
seq2  TAGACCGAGAGA-ATACATACCAAACACAGGG-AGGT-AGTAGTAATCCA  47

seq1  GTTTCCACCTGCATTCCTGGCCTCATTTATTCAGCAAATATGGGTGTCTA  99
      |||| |  | ||||| ||||||||| ||||||||| |||| | |||||||
seq2  GTTT-CTGCAGCATTACTGGCCTCAATTATTCAGC-AATACGAGTGTCTA  95

seq1  GTAGTGAACATGGTTTACAACGCAAGAAAACAGTAGTGATGGAGAGATTC  149
      ||||||||||||| || || |||||| ||||||| | || |||| || ||
seq2  GTAGTGAACATGGGTTGCAGCGCAAGGAAACAGT-GGGACGGAGCGACTC  144

seq1  CTTCCTTTCATCAAACTTGGTGCTGAACAACTACCATTAACTGTGGTGCT  199
      | | |  || ||| |||||| | ||||| | ||||||  |||||||||||
seq2  C-TGCAGTCTTCAGACTTGG-GGTGAACTAATACCATCCACTGTGGTGCT  192

seq1  ATGACACTTGTATCTACAGATGCAAAAGCATCTAAAAGAATGACAGGATT  249
      ||||||| |||||||||   | | ||||| ||||| |||| |||||||||
seq2  ATGACAC-TGTATCTAC-TCTCCCAAAGCCTCTAATAGAAGGACAGGATT  240

seq1  ATGGGGTTAAGGGGGACAGAATGAGAGAAACATGAATAAAAGGCAGGTAG  299
       |||||| ||||||| ||||||| | |||||  ||||||||| |||||||
seq2  TTGGGGTAAAGGGGGTCAGAATGTGTGAAACTGGAATAAAAGCCAGGTAG  290

seq1  GAACCATAGCCATTCTGAAGAATGAGGGTTTTGCTATGAATTGGGGAATG  349
      | ||||||||| || |||||| |||||||| || ||||||||||||||||
seq2  GCACCATAGCCTTTATGAAGAGTGAGGGTTATGGTATGAATTGGGGAATG  340

seq1  ACCACCAATGACTTTCCTAGACAATGTCTAAGCTCAGGGAGAATGATGAA  399
      ||| |||| | |||| || |||||||||| || |||||||||||||||||
seq2  ACCTCCAAAGCCTTTACTCGACAATGTCTCAGATCAGGGAGAATGATGAA  390

seq1  GAGCTGATAGTACCCACCAGTGTAACAGTGGAATGTAGCCTCACACTTCA  449
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGCTGATAGTACCCGCCAGTGTAACAGTGGAATGTAGCCTCACACTTCA  440

seq1  TTCCTAAGTTTTTTACAGTAAGGCTATATCTTAGATACCTTCTCTCTAGG  499
      |||||||| ||||| ||||||||||||||||||||||| |||||||||||
seq2  TTCCTAAG-TTTTTCCAGTAAGGCTATATCTTAGATACGTTCTCTCTAGG  489

seq1  CACAAACTGACCTTTCTAGGACATCTATAGGTGTAGACTTGTACATGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTGACCTTTCTAGGACATCTATAGGTGTAGACTTGTACATGAAG  539

seq1  ATGTTATAAAGCAGATCCTTGGCAGCGTTCTAGGAAGCTCAAAGTTGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAAAGCAGATCCTTGGCAGCGTTCTAGGAAGCTCAAAGTTGAGA  589

seq1  ATTTGATTCATTTTCTTCATCAGGATTACCAGTCCATAAGAGGGTAAAAA  649
      | ||||||||||||||||||||||||| ||| |||||| |||||||||||
seq2  ACTTGATTCATTTTCTTCATCAGGATTGCCATTCCATAGGAGGGTAAAAA  639

seq1  TGATACAAAATCAGAATATGAACATATAATTCCAGACCAAAAGAGCATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAAATCAGAATATGAACATATAATTCCAGACCAAAAGAGCATCC  689

seq1  AGAAAGGTCATGTGAACAACATGATCTAACCTGAAGTCATGTATGCAGGG  749
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  AGAAAGGTCATGTGAACAACATGATCTAACCAGAAGTCATCTATGCAGGG  739

seq1  GTAAAGGGGACATTTCGGTGAGAACCATGATCAAAATGAGGATAAAAATG  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTAAAGGGGACATTTGGGTGAGAACCATGATCAAAATGAGGATAAAAATG  789

seq1  TGATTCCAAGGTTTTAGGGAAAGGGTTAGAAATCCAGGCACCACTTTCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAAGGTTTTAGGGAAAGGGTTAGAAATCCAGGCACCACTTTCCA  839

seq1  GGTCAACAGTGAAGGAGTTAGCGGTGACTTGACTCATGACAGTCTCATGG  899
      ||||||||||||||||||||||||||||| | | | ||||||||||||||
seq2  GGTCAACAGTGAAGGAGTTAGCGGTGACTAG-CCCCTGACAGTCTCATGG  888

seq1  AGTGCCGCATTGTTTTATAGATCTGGGGTTGGACAGGCAAAAGCAATAAG  949
      ||||||||||||||||||||||  |||||||||||||||||||||||| |
seq2  AGTGCCGCATTGTTTTATAGATAAGGGGTTGGACAGGCAAAAGCAATACG  938

seq1  CCATGTTCTCTATTGTATCCCTTAAAGAACCCAATACCATGCTCCCAAGC  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTATATTGTATCCCTTAAAGAACCCAATACCATGCTCCCAAGC  988

seq1  TTTGAAAGGGACCAAGTCATAGCATGTAGAATTC  1033
      ||||||||||||||||||| ||||||||||||||
seq2  TTTGAAAGGGACCAAGTCAAAGCATGTAGAATTC  1022