BAC Information

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BAC

Clone NameB6Ng01-052C20
Chromosome9 (Build37)
Map Location 18,508,912 - 18,510,044
singlet/doubletsinglet
Overlap geneMuc16
Upstream geneLOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1
Downstream geneOlfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C20.bB6Ng01-052C20.g
ACCDH875608DH875609
length1,0871,122
definitionDH875608|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C20, 5' end.DH875609|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgctggtgagatactagctcgggataagtggtgctaaaacccg
ggattgaaccagggacctttagaatacactaaaaaacaatacactaaatc
tctactacatgtcttaaatgatatatgataatactcttagcatttagatt
aatataaacagagttttctaagaatgcatttgaatattgtacttgatttg
gtttgggcaatgacaaagatgttatggaatatatatataaatggccaaat
gacaactagcccatgatattttgaccatagtctaaaaaaatcttaggggc
taataaatatccctttgtgttgtgaatggccctggtgttgtttgtatttt
gatgttaattccattttcccagggggttgtctggagtgaggaatgagtca
catactatgatgacttcttctaaaccatcctataataaataaaggagcca
atcactggatgggtagtcaggacttcagggttggacagaggaaaagagaa
agcaggagagaattaggggctttgggcgatgggtatagagacaagacaag
atatagctactagcttcttccagattagataatgaatctgtgaggatttg
ccagtagacaatttagatttaatatggcttacaagattagcattctagtt
gttgcacccatagattgagttaacattgtttctgagctaagtttgtatgg
tgtttttcttcatggggcagcttgattcacttccagtgagaaagtacagc
agcaaagcatgagttttcctgatgtgcaccacaaatgccgagatggtttt
gaagcatggggctggcatgagacatggcagtagttgctgggtgaagagat
tttcgaaatatgagtcagagaatctccaccagttaggaactggacagaaa
gaccaacgggcctgagagtatctggatgtagtgcagaaattgctatttat
tttatatttcctataacacttggggcgggggagggataaatagttcttct
ttagcattcaggctttattacagatgtaatgactttatactaggtcaccc
caatattccacccggagaactcctaaggttatgacag
gaattccttgaactttagttatgaagaatgagctttcttaattctccaaa
ttaagaaagctgagatggatttttcaaagtggaaattattccaagaatca
tcaaataactcaacttagtaactgaaatgtcttccaggggtaatgcttta
acctaaagcaaagcatgagcatgcacaaaattctggatactgtactctgg
aactgggcataaggcccaaggctctaagcaaaatggatttacttatcctg
agcatttgtaatttaataataataatgatgataataataataacaaaact
aatagaacatcattttccttttcatctgaaatgtgggaatcacaaaagat
cccatgactgtatctgtcttgagcttcatcctgtaaaactattttagaaa
tactgtaattctgtaactaacagaaatcacatgtaaccactcccacagta
taatattgtatttgggaaccctgaatctgtgctcctggacagggtcatcc
atccatggctctagaattaactatcttgtatagcctttgaagaatgaact
gtgttttccagcagtgctgcactgtattcccattgtatttccagtacctc
caaccctcagaagcaggggtagctgaaactactttctctgtgtgtcttat
gttaagtttgtgaagtgggtaatagagagagacatgaaagtcttttatta
aatacattatgtctgtaagagaagggatttaaataattaacaaaatacag
ttagaaagaaagaaagaaagaaagaaagaaagaagaaagaaagaaagaag
aaagaaagaaagaaagaaaggaaggaaggacgaaagaaagaaagaaagga
agaaaggagaaagaaagaaagaagaaagaaagaagaaagagagagagaga
gagaagagagagggaagaaagaatgaaagaatgaagtatgaaagaagaaa
gaagaagaaagaagaaagaattcagctcatcctacctattactcccaacc
actgaaatacagaatgaagccaccatagcttttaatggtgctggggaata
accactccaagcccttcaagtaccctgctacctgagattgcatctccctc
ctctatacatgggaacttgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_18508912_18510044
seq2: B6Ng01-052C20.g_66_1187

seq1  GAATTCCTTGAACTTTAGTTATGAAGAATGAGCTTTCTTAATTCTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAACTTTAGTTATGAAGAATGAGCTTTCTTAATTCTCCAAA  50

seq1  TTAAGAAAGCTGAGATGGATTTTTCAAAGTGGAAATTATTCCAAGAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAGCTGAGATGGATTTTTCAAAGTGGAAATTATTCCAAGAATCA  100

seq1  TCAAATAACTCAACTTAGTAACTGAAATGTCTTCCAGGGGTAATGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAACTCAACTTAGTAACTGAAATGTCTTCCAGGGGTAATGCTTTA  150

seq1  ACCTAAAGCAAAGCATGAGCATGCACAAAATTCTGGATACTGTACTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGCAAAGCATGAGCATGCACAAAATTCTGGATACTGTACTCTGG  200

seq1  AACTGGGCATAAGGCCCAAGGCTCTAAGCAAAATGGATTTACTTATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCATAAGGCCCAAGGCTCTAAGCAAAATGGATTTACTTATCCTG  250

seq1  AGCATTTGTAATTTAATAATAATAATGATGATAATAATAATAACAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTAATTTAATAATAATAATGATGATAATAATAATAACAAAACT  300

seq1  AATAGAACATCATTTTCCTTTTCATCTGAAATGTGGGAATCACAAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACATCATTTTCCTTTTCATCTGAAATGTGGGAATCACAAAAGAT  350

seq1  CCCATGACTGTATCTGTCTTGAGCTTCATCCTGTAAAACTATTTTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGACTGTATCTGTCTTGAGCTTCATCCTGTAAAACTATTTTAGAAA  400

seq1  TACTGTAATTCTGTAACTAACAGAAATCACATGTAACCACTCCCACAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAATTCTGTAACTAACAGAAATCACATGTAACCACTCCCACAGTA  450

seq1  TAATATTGTATTTGGGAACCCTGAATCTGTGCTCCTGGACAGGGTCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGTATTTGGGAACCCTGAATCTGTGCTCCTGGACAGGGTCATCC  500

seq1  ATCCATGGCTCTAGAATTAACTATCTTGTATAGCCTTTGAAGAATGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGCTCTAGAATTAACTATCTTGTATAGCCTTTGAAGAATGAACT  550

seq1  GTGTTTTCCAGCAGTGCTGCACTGTATTCCCATTGTATTTCCAGTACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCCAGCAGTGCTGCACTGTATTCCCATTGTATTTCCAGTACCTC  600

seq1  CAACCCTCAGAAGCAGGGGTAGCTGAAACTACTTTCTCTGTGTGTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTCAGAAGCAGGGGTAGCTGAAACTACTTTCTCTGTGTGTCTTAT  650

seq1  GTTAAGTTTGTGAAGTGGGTAATAGAGAGAGACATGAAAGTCTTTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTTTGTGAAGTGGGTAATAGAGAGAGACATGAAAGTCTTTTATTA  700

seq1  AATACATTATGTCTGTAAGAGAAGGGATTTAAATAATTAACAAAATACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTATGTCTGTAAGAGAAGGGATTTAAATAATTAACAAAATACAG  750

seq1  TTAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  800
      ||||||||||||||||||||||||||||||||     |||||||||||||
seq2  TTAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG-----AAGAAAGAAAGAA  795

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGAAAGAAAGAAAG  850
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AG-AAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGACGAAAGAAAGAAAG  844

seq1  AAAGGAAGAAAGGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGA  900
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  AAAGGAAGAAAGGAGAAAGAAAGAAAG-AAGAAAGAAAG-AAGAAAGAGA  892

seq1  GAGAGAGAGAGAAAGAGAGAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAA  950
      ||||||||||| ||||||||||| ||||||||| ||||||| | ||| | 
seq2  GAGAGAGAGAG-AAGAGAGAGGG-AAGAAAGAATGAAAGAATG-AAGTAT  939

seq1  GAAAGAAAGAAAGA--AAGAAAGAAAGAAAGAAATTCAGCTCATCCTACC  998
      ||||| ||||||||  ||||||| ||||||| ||||||||||||||||||
seq2  GAAAG-AAGAAAGAAGAAGAAAG-AAGAAAG-AATTCAGCTCATCCTACC  986

seq1  TATACCTCCCAAACACTGAGATTACAGATTGAAGCCACCATAGCTTATAT  1048
      |||  ||||||| |||||| | |||||| ||||||||||||||||| || 
seq2  TATTACTCCCAACCACTGA-AATACAGAATGAAGCCACCATAGCTTTTA-  1034

seq1  ATGGTGCTGGGGATTAAACCACT-CAAGCTCTTCAAGTACTCTGCTAACT  1097
      ||||||||||||| | ||||||| ||||| |||||||||| |||||| ||
seq2  ATGGTGCTGGGGAAT-AACCACTCCAAGCCCTTCAAGTACCCTGCTACCT  1083

seq1  GAG-TTGCATCT-CCTACTCATTACAT-GGAACTTGTTA  1133
      ||| |||||||| ||| |||  ||||| |||||||||||
seq2  GAGATTGCATCTCCCTCCTCTATACATGGGAACTTGTTA  1122