BAC Information

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BAC

Clone NameB6Ng01-052I22
Chromosome9 (Build37)
Map Location 71,289,514 - 71,436,950
singlet/doubletdoublet
Overlap geneGrinl1a, AA407270
Upstream geneRnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
Downstream geneLOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052I22.bB6Ng01-052I22.g
ACCDH875877DH875878
length4671,102
definitionDH875877|Mus musculus domesticus DNA, BAC clone: B6Ng01-052I22, 5' end.DH875878|Mus musculus domesticus DNA, BAC clone: B6Ng01-052I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,289,514 - 71,289,985)(71,435,838 - 71,436,950)
sequence
atggggagatgtgatcccatgtgccacccagcaattcagtaaactgacac
actctattacaagttggaaaatctgtgtgacagtatatattttgagtagt
attaggaacatgctgatatttcctcctggaggttcaagctatgtatacat
ttcacgaatcgtcttagcccaaacaaaactgatccccctttaggaaagat
ctttacttggttaagttcagagtaagtggagagggcgaagaaaagacgtt
tgcacttaatggatatctgtgggaacaagatggatactggcactgatatg
cccaggtcagacccttcaggctaggaaagtgctgggtggggagaaaggga
ggagagagagcagaaaggagagaagaggaggtggaagaggccttatcccg
gtctttgagagcctagcaaaatggtgaggcctacagggagcataggtttg
acaggtccatgaaatat
gaattccccttgactggcatgtgaaagagactgacaggtgttccagcttc
ctcttctcagtggaggaaacagtccgtatagctctgtttcctgtaccctg
tgggattcaaggacagtgtgcaaatagctcttccatcctgtaggatctga
ggaagggacatggggatttgggggtaattcagcccctgaaggaaggaagc
tggttggagcatccactgagggagggggacagattttcattgcatcccga
aaactgcctggctcttgcttaggatccccctgagccggttcttgacaggc
taggtagtagagttttagaattgtggcatcatcagggcttaagcgaaaag
cctctgccactaacagatgacagaggctcgggaaaacactgactggtttg
tttgtttgtttgtttgtttgtttttgtcttttgttcttccatcttgcctt
gttcagtgcagggtggtcagacttagggctctgaaggatactgaagaaca
ctggattcacagagcatcccacctgtattctgcagagtgtacagaaccat
tccagccttgttcctaagccactacagaggcctaaatgtggtctctgttg
atgtttctctaatgctgatacacactgagagctgatttggacctttgtgt
ccctaccaagcttcttggtggctgggcacacccttccaagtcagtgagcc
tcagttgcctgagtgcaagggctggctcactggagctaaacctgaggtac
ttcaatctgaagcgcttcatctgttacctgctttacagtttaacatgggc
cccagtacttttccagcacgtaggagaatacagtggtgcttgcctctttc
cctcttccgttgagctgtgtctcctaaatgtcaaccatagatgatctttt
ctacgtgcaaatccagccgcctgcttcttctgcttcaggaccttatgcaa
ggccaactcacgtttattattcgggtccccaggcttgactcttatgtctg
tctacctctactttcccaggtattttcaatacttccactcttggggcttc
ggagctgcttgtccccaccctgccccacttcttggtgttcataccttctc
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71289514_71289985
seq2: B6Ng01-052I22.b_48_520

seq1  GAATTCATGGGGAGATGTGATCCCATGTGCCACCCAGCAATTCAGTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGGAGATGTGATCCCATGTGCCACCCAGCAATTCAGTAAAC  50

seq1  TGACACACTCTATTACAAGTTGGAAAATCTGTGTGACAGTATATATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACTCTATTACAAGTTGGAAAATCTGTGTGACAGTATATATTTTG  100

seq1  AGTAGTATTAGGAACATGCTGATATTTCCTCCTGGAGGTTCAAGCTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTATTAGGAACATGCTGATATTTCCTCCTGGAGGTTCAAGCTATGT  150

seq1  ATACATTTCACGAATCGTCTTAGCCCAAACAAAACTGATCCCCCTTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTCACGAATCGTCTTAGCCCAAACAAAACTGATCCCCCTTTAGG  200

seq1  AAAGATCTTTACTTGGTTAAGTTCAGAGTAAGTGGAGAGGGCGAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCTTTACTTGGTTAAGTTCAGAGTAAGTGGAGAGGGCGAAGAAAA  250

seq1  GACGTTTGCACTTAATGGATATCTGTGGGAACAAGATGGATACTGGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTGCACTTAATGGATATCTGTGGGAACAAGATGGATACTGGCACT  300

seq1  GATATGCCCAGGTCAGACCCTTCAGGCTAGGAAAGTGCTGGGTGGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCCCAGGTCAGACCCTTCAGGCTAGGAAAGTGCTGGGTGGGGAGA  350

seq1  AAGGGAGGAGAGAGAGCAGAAAGGAGAGAAGAGGAGGTGGAAGAGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGAGAGAGAGCAGAAAGGAGAGAAGAGGAGGTGGAAGAGGCCTT  400

seq1  ATCCCGG-CCCTGAGAGCCTAGCAAAATGATGAGGCCTACAGGGAGCATA  449
      ||||||| |  |||||||||||||||||| ||||||||||||||||||||
seq2  ATCCCGGTCTTTGAGAGCCTAGCAAAATGGTGAGGCCTACAGGGAGCATA  450

seq1  GGTTTGACAGGTCCATGAAATAT  472
      |||||||||||||||||||||||
seq2  GGTTTGACAGGTCCATGAAATAT  473

seq1: chr9_71435838_71436950
seq2: B6Ng01-052I22.g_67_1168 (reverse)

seq1  GGGAGAA-GTATGAAGCAACAAG-AGTGGGGGAGGGTGGGAAACAAGCAG  48
      ||||||| ||||||| || |||| ||||||| ||||||||  ||||||||
seq2  GGGAGAAGGTATGAA-CACCAAGAAGTGGGGCAGGGTGGG-GACAAGCAG  48

seq1  CTCAGGAAGCCCCAGAGAG-GGAGGTATTTGAAATACCTGGGAAAGGTAG  97
      |||  ||||||||| |||| ||| |||||  |||||||||||||||    
seq2  CTC-CGAAGCCCCA-AGAGTGGAAGTATTGAAAATACCTGGGAAAG---T  93

seq1  AGAGATAGACAAGACATAAAAGAGTC-AGGCTGGGGACCCGAATATTAAA  146
      |||| ||||| ||||||  ||||||| || ||||||||||||||| ||||
seq2  AGAGGTAGAC-AGACAT--AAGAGTCAAGCCTGGGGACCCGAATAATAAA  140

seq1  CGTGGAGTTTGGCTTTGCATAGGTTCCTGAAGCAGAAGAAGCAGGCGGCT  196
      ||| ||| ||||| ||||||| | ||||||||||||||||||||||||||
seq2  CGT-GAG-TTGGCCTTGCATAAGGTCCTGAAGCAGAAGAAGCAGGCGGCT  188

seq1  GGATTTTGCACGTTAGAAAAGATCATTCTATGGTTGACATTTAGGAGACA  246
      ||| |||||||| |||||||||||| ||||||||||||||||||||||||
seq2  GGA-TTTGCACG-TAGAAAAGATCA-TCTATGGTTGACATTTAGGAGACA  235

seq1  CAGCTCAACGGAAGAGGGAAAGAGGCAAGCACCACTGTTATTCTCCTACG  296
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGCTCAACGGAAGAGGGAAAGAGGCAAGCACCACTG-TATTCTCCTACG  284

seq1  TGCTGGAAAAGTACTGGGG-CCATGTTAAACTGTAAAGCAGGTAACAGAT  345
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCTGGAAAAGTACTGGGGCCCATGTTAAACTGTAAAGCAGGTAACAGAT  334

seq1  GAAGCGCTTCAGATTGAAGTACCTCAGGTTTAGCTCCAGTGAGCCAGCCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGCTTCAGATTGAAGTACCTCAGGTTTAGCTCCAGTGAGCCAGCCC  384

seq1  TTGCACTCAGGCAACTGAGGCTCACTGACTTGGAAGGGTGTGCCCAGCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTCAGGCAACTGAGGCTCACTGACTTGGAAGGGTGTGCCCAGCCA  434

seq1  CCAAGAAGCTTGGTAGGGACACAAAGGTCCAAATCAGCTCTCAGTGTGTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGCTTGGTAGGGACACAAAGGTCCAAATCAGCTCTCAGTGTGTA  484

seq1  TCAGCATTAGAGAAACATCAACAGAGACCACATTTAGGCCTCTGTAGTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTAGAGAAACATCAACAGAGACCACATTTAGGCCTCTGTAGTGG  534

seq1  CTTAGGAACAAGGCTGGAATGGTTCTGTACACTCTGCAGAATACAGGTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAACAAGGCTGGAATGGTTCTGTACACTCTGCAGAATACAGGTGG  584

seq1  GATGCTCTGTGAATCCAGTGTTCTTCAGTATCCTTCAGAGCCCTAAGTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTGTGAATCCAGTGTTCTTCAGTATCCTTCAGAGCCCTAAGTCT  634

seq1  GACCACCCTGCACTGAACAAGGCAAGATGGAAGAACAAAAGACAAAAACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCCTGCACTGAACAAGGCAAGATGGAAGAACAAAAGACAAAAACA  684

seq1  AACAAACAAACAAACAAACAAACCAGTCAGTGTTTTCCCGAGCCTCTGTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAACCAGTCAGTGTTTTCCCGAGCCTCTGTC  734

seq1  ATCTGTTAGTGGCAGAGGCTTTTCGCTTAAGCCCTGATGATGCCACAATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTAGTGGCAGAGGCTTTTCGCTTAAGCCCTGATGATGCCACAATT  784

seq1  CTAAAACTCTACTACCTAGCCTGTCAAGAACCGGCTCAGGGGGATCCTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTCTACTACCTAGCCTGTCAAGAACCGGCTCAGGGGGATCCTAA  834

seq1  GCAAGAGCCAGGCAGTTTTCGGGATGCAATGAAAATCTGTCCCCCTCCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGCCAGGCAGTTTTCGGGATGCAATGAAAATCTGTCCCCCTCCCT  884

seq1  CAGTGGATGCTCCAACCAGCTTCCTTCCTTCAGGGGCTGAATTACCCCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATGCTCCAACCAGCTTCCTTCCTTCAGGGGCTGAATTACCCCCA  934

seq1  AATCCCCATGTCCCTTCCTCAGATCCTACAGGATGGAAGAGCTATTTGCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCATGTCCCTTCCTCAGATCCTACAGGATGGAAGAGCTATTTGCA  984

seq1  CACTGTCCTTGAATCCCACAGGGTACAGGAAACAGAGCTATACGGACTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCTTGAATCCCACAGGGTACAGGAAACAGAGCTATACGGACTGT  1034

seq1  TTCCTCCACTGAGAAGAGGAAGCTGGAACACCTGTCAGTCTCTTTCACAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCACTGAGAAGAGGAAGCTGGAACACCTGTCAGTCTCTTTCACAT  1084

seq1  GCCAGTCAAGGGGAATTC  1113
      ||||||||||||||||||
seq2  GCCAGTCAAGGGGAATTC  1102