BAC Information

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BAC

Clone NameB6Ng01-052N15
Chromosome9 (Build37)
Map Location 64,196,428 - 64,349,053
singlet/doubletdoublet
Overlap geneMegf11
Upstream geneMap2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l
Downstream geneRab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052N15.bB6Ng01-052N15.g
ACCDH876078DH876079
length3071,153
definitionDH876078|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N15, 5' end.DH876079|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,196,428 - 64,196,734)(64,347,896 - 64,349,053)
sequence
tgtctaccaattttttgtttttgtttgtttgttgagacagggtttctctg
tgggacaacccctgctgtcctggaactcgatttgtagaccaggttggcct
ggaactcacagcgatgcacctgcctctgtctactgagggctaggactaaa
ggcatgcatcaccatgcccagctaccaagatgattaaaaaaaaaaaaaaa
aaaaaatctcgggctactgagatggctcagtgagcaaaggttgcatggct
ccagcgcttcgtcatcatcctgagcccagacttctcgttagagtcttgca
caaagct
gaattcagagcatccctccacccacccaccccccatcctcaaaaaatcta
tccttgatacagaaacccagatctggccattgtagtggccagatctcctt
cctcctcatctttggcaaggctgggtcatcccatcgcctcctactcctcc
tatgccgaggaagagaagcagacagtgtagcccacagggaactgagccca
ggcagctttctgaaacactctggaactctgggcccctgcttctttcctcc
tacaggatatcagtgccctggggtcaccaaataccattcccactctgaga
tgaccagccgagatagtcagataacggggctttaaggaagcagcatgccc
aggttatcaaggctcctgaaataccattgtatgtcacgtttttagtacag
atacacagtgccaactaccttgatctctaaatgagagacacaacacacag
cttcttaaggaggctagagagtgagccatgtgagggtggctagtggtcac
tgactgaccttactccccaagaccttataaccctacactacagccttaga
gaacagcttctagtctaaatgtccccaccacgggggacacacacagagca
gcgaggacacttcctgtggagctggacctcatgagtcccagtgtcctttg
tgagctgacccaatgccatgactcatggaagaggttctattgggatttat
ttaaaggttttaatgaatccagaatagcttttcttttcaacttctgacac
taaaagaaatacactttccattaagcagggctgaggaaaacattttgaca
ttgggaaatcattccccagatttgaaatggttggttatctagcccacagg
ccctaagattttagatgagggccatttcccctcctgggaggacaaacggg
aaaggcacatatctgcacacatcccgagatccagtcctccatgcggccct
tctcctggaagcttaactgcttgacccccacctccctcacttccttgtta
aattctttttttaagcagctccttcagcaacaagccaatcatcacaaatc
ctgttgtaaccatggggtctaattaatgactatggaggctgactttctaa
ttcattcggaatcaccccacttatgcgaaatttagctgggagactaggac
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64196428_64196734
seq2: B6Ng01-052N15.b_52_358

seq1  TGTCTACCAATTTTTTGTTTTTGTTTGTTTGTTGAGACAGGGTTTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCAATTTTTTGTTTTTGTTTGTTTGTTGAGACAGGGTTTCTCTG  50

seq1  TGGGACAACCCCTGCTGTCCTGGAACTCGATTTGTAGACCAGGTTGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAACCCCTGCTGTCCTGGAACTCGATTTGTAGACCAGGTTGGCCT  100

seq1  GGAACTCACAGCGATGCACCTGCCTCTGTCTACTGAGGGCTAGGACTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACAGCGATGCACCTGCCTCTGTCTACTGAGGGCTAGGACTAAA  150

seq1  GGCATGCATCACCATGCCCAGCTACCAAGATGATTAAAAAAAAAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCATCACCATGCCCAGCTACCAAGATGATTAAAAAAAAAAAAAAA  200

seq1  AAAGAATCTCGGGCTACTGAGATGGCTCAGTGAGCAAAGGTTGCATGGCT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCTCGGGCTACTGAGATGGCTCAGTGAGCAAAGGTTGCATGGCT  250

seq1  CCAGCGCTGCGTCATCATCCTGAGCCCAGACTTCACGTTAGAGCCTTGCA  300
      |||||||| ||||||||||||||||||||||||| |||||||| ||||||
seq2  CCAGCGCTTCGTCATCATCCTGAGCCCAGACTTCTCGTTAGAGTCTTGCA  300

seq1  CAAAGCT  307
      |||||||
seq2  CAAAGCT  307

seq1: chr9_64347896_64349053
seq2: B6Ng01-052N15.g_69_1221 (reverse)

seq1  AATGTCCTTGATCT-CCAGCTAAATCT-GCACTTAGCTGGGTGATTTCCA  48
      |||||||| | ||| |||||||||| | ||| | ||  ||||||||  | 
seq2  AATGTCCTAG-TCTCCCAGCTAAATTTCGCA-TAAGTGGGGTGATT--CC  46

seq1  GAATGAATGTAGAAAGTACAGCCTCATTAGTCATTAATTTAGACCCCATG  98
      |||||||| |||||||| |||||||  |||||||||| ||||||||||||
seq2  GAATGAAT-TAGAAAGT-CAGCCTCCATAGTCATTAA-TTAGACCCCATG  93

seq1  GTTAC-ACAGGATTTGTGATGATTGGCTTGTTGCTGAAGGAGCTGCTTAA  147
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAACAGGATTTGTGATGATTGGCTTGTTGCTGAAGGAGCTGCTTAA  143

seq1  AAAAAGAATTTAACAAGGAAGTGAGGGAGGTGGGGGTCAAGCAGTTAAGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATTTAACAAGGAAGTGAGGGAGGTGGGGGTCAAGCAGTTAAGC  193

seq1  TTCCAGGAGAAAGGGGCCGCATGGAGGACTGGATCTCGGGATGTGTGCAG  247
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGAA--GGGCCGCATGGAGGACTGGATCTCGGGATGTGTGCAG  241

seq1  ATATGTGCCTTTCCCGTTTGTCCTCCCAGGAGGGGAAATGGCCCTCATCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCCTTTCCCGTTTGTCCTCCCAGGAGGGGAAATGGCCCTCATCT  291

seq1  AAAATCTTAGGGCCTGTGGGCTAGATAACCAACCATTTCAAATCTGGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTAGGGCCTGTGGGCTAGATAACCAACCATTTCAAATCTGGGGA  341

seq1  ATGATTT-CCAATGTCAAAATGTTTTCCTCAGCCCTGCTTAATGGAAAGT  396
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCCCAATGTCAAAATGTTTTCCTCAGCCCTGCTTAATGGAAAGT  391

seq1  GTATTTCTTTTAGTGTCAGAAGTTGAAAAGAAAAGCTATTCTGGATTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTTTTAGTGTCAGAAGTTGAAAAGAAAAGCTATTCTGGATTCAT  441

seq1  TAAAACCTTTAAATAAATCCCAATAGAACCTCTTCCATGAGTCATGGCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTTTAAATAAATCCCAATAGAACCTCTTCCATGAGTCATGGCAT  491

seq1  TGGGTCAGCTCACAAAGGACACTGGGACTCATGAGGTCCAGCTCCACAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGCTCACAAAGGACACTGGGACTCATGAGGTCCAGCTCCACAGG  541

seq1  AAGTGTCCTCGCTGCTCTGTGTGTGTCCCCCGTGGTGGGGACATTTAGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCTCGCTGCTCTGTGTGTGTCCCCCGTGGTGGGGACATTTAGAC  591

seq1  TAGAAGCTGTTCTCTAAGGCTGTAGTGTAGGGTTATAAGGTCTTGGGGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTGTTCTCTAAGGCTGTAGTGTAGGGTTATAAGGTCTTGGGGAG  641

seq1  TAAGGTCAGTCAGTGACCACTAGCCACCCTCACATGGCTCACTCTCTAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAGTCAGTGACCACTAGCCACCCTCACATGGCTCACTCTCTAGC  691

seq1  CTCCTTAAGAAGCTGTGTGTTGTGTCTCTCATTTAGAGATCAAGGTAGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAGAAGCTGTGTGTTGTGTCTCTCATTTAGAGATCAAGGTAGTT  741

seq1  GGCACTGTGTATCTGTACTAAAAACGTGACATACAATGGTATTTCAGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGTGTATCTGTACTAAAAACGTGACATACAATGGTATTTCAGGAG  791

seq1  CCTTGATAACCTGGGCATGCTGCTTCCTTAAAGCCCCGTTATCTGACTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATAACCTGGGCATGCTGCTTCCTTAAAGCCCCGTTATCTGACTAT  841

seq1  CTCGGCTGGTCATCTCAGAGTGGGAATGGTATTTGGTGACCCCAGGGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCTGGTCATCTCAGAGTGGGAATGGTATTTGGTGACCCCAGGGCAC  891

seq1  TGATATCCTGTAGGAGGAAAGAAGCAGGGGCCCAGAGTTCCAGAGTGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCCTGTAGGAGGAAAGAAGCAGGGGCCCAGAGTTCCAGAGTGTTT  941

seq1  CAGAAAGCTGCCTGGGCTCAGTTCCCTGTGGGCTACACTGTCTGCTTCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCTGCCTGGGCTCAGTTCCCTGTGGGCTACACTGTCTGCTTCTC  991

seq1  TTCCTCGGCATAGGAGGAGTAGGAGGCGATGGGATGACCCAGCCTTGCCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCGGCATAGGAGGAGTAGGAGGCGATGGGATGACCCAGCCTTGCCA  1041

seq1  AAGATGAGGAGGAAGGAGATCTGGCCACTACAATGGCCAGATCTGGGTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGAGGAAGGAGATCTGGCCACTACAATGGCCAGATCTGGGTTT  1091

seq1  CTGTATCAAGGATAGATTTTTTGAGGATGGGGGGTGGGTGGGTGGAGGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCAAGGATAGATTTTTTGAGGATGGGGGGTGGGTGGGTGGAGGGA  1141

seq1  TGCTCTGAATTC  1158
      ||||||||||||
seq2  TGCTCTGAATTC  1153