BAC Information

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BAC

Clone NameB6Ng01-052P02
Chromosome9 (Build37)
Map Location 48,452,912 - 48,584,239
singlet/doubletdoublet
Overlap geneZbtb16
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt
Downstream geneHtr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052P02.bB6Ng01-052P02.g
ACCDH876144DH876145
length595897
definitionDH876144|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P02, 5' end.DH876145|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,583,645 - 48,584,239)(48,452,912 - 48,453,812)
sequence
gaattctgtgcatacatttgtctagctgaagccaaataaaagaatctgtt
gtcataaaacaagagtttcttggagcccaggggcaagaaaacagttctcc
cttgaaaggtgagagaacagaattaccatctagctgttggaaacgttctt
tctagtcctgctcagtttatgcatcctgcttaatttttatagttttttgc
agagtgaatccaagaatggccttcccatgacttccaggtgcacaggtgac
aaggttaggctcagctgtccatgttttctagaatctcagactctagagaa
cattctgtcctctgcagctgggctaagtgtccacacttggccagttgctc
agtgaggctttgtagtgaggaccatgggtgtggtctgctcagactctcac
aagagagctgcatggcatgacttatccaagagaaatgtacttgcaacccg
ttttagtggttggatttctgaggtcagagtgctgaaggcttcctacaggg
tgttccttctggcttgtcttccctgtgtcctcaacggatggggaaagagt
taagatctctctctctctctctctctctctctctctctctctctc
gaattctcagaatctaacaactttccaagaaaacccagatgtttgggttt
tcttagctgtaagagaactaacaggtcctccatcctaaactgcagaaaga
ctggtttccataattctgggaatgggcaggtcatggagaagtgaggcccc
agagagaaatgcatgagccaagagcttaagaagaccgtgggatgcggagc
acaagaggaagggttgacatttgacagggcatagataccctacgtcatac
acccgggatcccagaaacccacagcactcgggggcttccctctcagagtt
catccatgttgggaattagtggcagtccccagtctctgaaggcagacagg
gagcctgtggggagagagaggcgccatgagaccctctggggcttcatgcc
atgttgtccatgtgattcttgttttttttttttttttttttttaattttc
tttgagatcagagaaatctaatttagacggcctagcctgatctcagctgc
tctgtggagaattaacgggaagatcaagctctggtggggcagagagcgga
ggttagtcgttaagagatttctgggagctgggtcggtgtctctcaggtca
gacacgggaggtccctgtgccctccctctgtcactgtgacttctcatctg
cctgacaccacgtgtgcatttccttcttctgtccacctggggtcactaga
agcttactttatcctgaagaccttccacctccaccccaatagatatcagt
taaaaacccaatgctgctttaaaagaagtgggtgggaagagaactaacag
gggtatggagccagggattttctcctgagctatgtaaagctaccagagtc
atagctagaatattgttgagagatacttctaaccctatctaatgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_48583645_48584239
seq2: B6Ng01-052P02.b_45_639 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTAACTCT  50

seq1  TTCCCCATCCGTTGAGGACACAGGGAAGACAAGCCAGAAGGAACACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATCCGTTGAGGACACAGGGAAGACAAGCCAGAAGGAACACCCTG  100

seq1  TAGGAAGCCTTCAGCACTCTGACCTCAGAAATCCAACCACTAAAACGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGCCTTCAGCACTCTGACCTCAGAAATCCAACCACTAAAACGGGT  150

seq1  TGCAAGTACATTTCTCTTGGATAAGTCATGCCATGCAGCTCTCTTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTACATTTCTCTTGGATAAGTCATGCCATGCAGCTCTCTTGTGAG  200

seq1  AGTCTGAGCAGACCACACCCATGGTCCTCACTACAAAGCCTCACTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGCAGACCACACCCATGGTCCTCACTACAAAGCCTCACTGAGCA  250

seq1  ACTGGCCAAGTGTGGACACTTAGCCCAGCTGCAGAGGACAGAATGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAAGTGTGGACACTTAGCCCAGCTGCAGAGGACAGAATGTTCTC  300

seq1  TAGAGTCTGAGATTCTAGAAAACATGGACAGCTGAGCCTAACCTTGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTGAGATTCTAGAAAACATGGACAGCTGAGCCTAACCTTGTCAC  350

seq1  CTGTGCACCTGGAAGTCATGGGAAGGCCATTCTTGGATTCACTCTGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACCTGGAAGTCATGGGAAGGCCATTCTTGGATTCACTCTGCAAA  400

seq1  AAACTATAAAAATTAAGCAGGATGCATAAACTGAGCAGGACTAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATAAAAATTAAGCAGGATGCATAAACTGAGCAGGACTAGAAAGAA  450

seq1  CGTTTCCAACAGCTAGATGGTAATTCTGTTCTCTCACCTTTCAAGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCAACAGCTAGATGGTAATTCTGTTCTCTCACCTTTCAAGGGAGA  500

seq1  ACTGTTTTCTTGCCCCTGGGCTCCAAGAAACTCTTGTTTTATGACAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTCTTGCCCCTGGGCTCCAAGAAACTCTTGTTTTATGACAACAG  550

seq1  ATTCTTTTATTTGGCTTCAGCTAGACAAATGTATGCACAGAATTC  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTATTTGGCTTCAGCTAGACAAATGTATGCACAGAATTC  595

seq1: chr9_48452912_48453812
seq2: B6Ng01-052P02.g_68_964

seq1  GAATTCTCAGAATCTAACAACTTTCCAAGAAAACCCAGATGTTTGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAATCTAACAACTTTCCAAGAAAACCCAGATGTTTGGGTTT  50

seq1  TCTTAGCTGTAAGAGAACTAACAGGTCCTCCATCCTAAACTGCAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTGTAAGAGAACTAACAGGTCCTCCATCCTAAACTGCAGAAAGA  100

seq1  CTGGTTTCCATAATTCTGGGAATGGGCAGGTCATGGAGAAGTGAGGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCCATAATTCTGGGAATGGGCAGGTCATGGAGAAGTGAGGCCCC  150

seq1  AGAGAGAAATGCATGAGCCAAGAGCTTAAGAAGACCGTGGGATGCGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAATGCATGAGCCAAGAGCTTAAGAAGACCGTGGGATGCGGAGC  200

seq1  ACAAGAGGAAGGGTTGACATTTGACAGGGCATAGATACCCTACGTCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGAAGGGTTGACATTTGACAGGGCATAGATACCCTACGTCATAC  250

seq1  ACCCGGGATCCCAGAAACCCACAGCACTCGGGGGCTTCCCTCTCAGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGATCCCAGAAACCCACAGCACTCGGGGGCTTCCCTCTCAGAGTT  300

seq1  CATCCATGTTGGGAATTAGTGGCAGTCCCCAGTCTCTGAAGGCAGACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTTGGGAATTAGTGGCAGTCCCCAGTCTCTGAAGGCAGACAGG  350

seq1  GAGCCTGTGGGGAGAGAGAGGCGCCATGAGACCCTCTGGGGCTTCATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGTGGGGAGAGAGAGGCGCCATGAGACCCTCTGGGGCTTCATGCC  400

seq1  ATGTTGTCCATGTGATTCTTGTTTTTTTTTTTTTTTTTTTTTTAATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCCATGTGATTCTTGTTTTTTTTTTTTTTTTTTTTTTAATTTTC  450

seq1  TTTGAGATCAGAGAAATCTAATTTAGACGGCCTAGCCTGATCTCAGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATCAGAGAAATCTAATTTAGACGGCCTAGCCTGATCTCAGCTGC  500

seq1  TCTGTGGAGAATTAACGGGAAGATCAAGCTCTGGTGGGGCAGAGAGCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAGAATTAACGGGAAGATCAAGCTCTGGTGGGGCAGAGAGCGGA  550

seq1  GGTTAGTCGTTAAGAGATTTCTGGGAGCTGGGTCGGTGTCTCTCAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTCGTTAAGAGATTTCTGGGAGCTGGGTCGGTGTCTCTCAGGTCA  600

seq1  GACACGGGAGGTCCCTGTGCCCTCCCTCTGTCACTGTGACTTCTCATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGGGAGGTCCCTGTGCCCTCCCTCTGTCACTGTGACTTCTCATCTG  650

seq1  CCTGACACCACGTGTGCATTTCCTTCTTCTGTCCACCTGGGGTCACTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACCACGTGTGCATTTCCTTCTTCTGTCCACCTGGGGTCACTAGA  700

seq1  AGCTTACTTTATCCTGAAGACCTTCCACCTCCACCCCAATAGATATCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTTTATCCTGAAGACCTTCCACCTCCACCCCAATAGATATCAGT  750

seq1  TAAAAAACCAAATGCTGCTTTAAAAGAAGTGGGTGGGAGGAGAACTAACA  800
      | ||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  T-AAAAACCCAATGCTGCTTTAAAAGAAGTGGGTGGGAAGAGAACTAACA  799

seq1  GGTGGTATGGAGCCAGGGATTTTCT-CTGAGGCTATGTAGAGCTAACCAG  849
      || |||||||||||||||||||||| |||| |||||||| |||| |||||
seq2  GG-GGTATGGAGCCAGGGATTTTCTCCTGA-GCTATGTAAAGCT-ACCAG  846

seq1  AGTCATAGCTAGAAATATGGTGAGAGATATCTTCTAACCCATTCTAATGC  899
      ||||||||||||||   || ||||||||| ||||||||||  ||||||||
seq2  AGTCATAGCTAGAATATTGTTGAGAGATA-CTTCTAACCCTATCTAATGC  895

seq1  AA  901
      ||
seq2  AA  897