BAC Information

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BAC

Clone NameB6Ng01-052P03
Chromosome9 (Build37)
Map Location 53,739,490 - 53,821,357
singlet/doubletdoublet
Overlap geneElmod1
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996
Downstream geneTnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052P03.bB6Ng01-052P03.g
ACCDH876146DH876147
length9931,105
definitionDH876146|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P03, 5' end.DH876147|Mus musculus domesticus DNA, BAC clone: B6Ng01-052P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,739,490 - 53,740,390)(53,820,235 - 53,821,357)
sequence
gaattcaaagggtaagcaaatatatccccctcctcgaagggaagagatac
aaagtcaagttgccagggtggagtgtagagagtggagtagaagtggagat
acagtggcatggaagctagtcagttaaggtcagaaaccacagggttctca
ccttctgaatgccaggtttggactttatcccataagaatgaggaatactt
gaaatcatgacataagtttgggttttaaaaagatctttctctgatagtag
catcataaaaagtttggaaggagcaaggaaaggaactttaccttcaagca
agggaagcttgaaggtaaagttcatttggggaagttactgtgacagtctg
tgaattggggtttgagcagaacctatgataatttattccatctagttagc
caagtatggttgtttggatgagaatggtccctgcaaactcttacgtttga
atccttagtcaccagggagtggaactgtttgagaaggattgggaggtgtg
gccttggtggaggaaggtttactatgcaatacttataaatcaatttcttt
ctcagctatcatcagagaagcttcctcctgcagcagatgggagcaaatac
agagaccacggatggacaatgtgtagagagtgtgagaccttggatacttc
agtcctaaatgggatgtcttcatcaaaaccctcccctcgaggctcaggga
accctgtagaagaaggtagacagattgtaagagtcagagaaaatgtagga
caccaaggaaacaaggccctctagacacaacaggggcaggtgcacatatg
aactcacagagactgcagcagcctacacaggtctgcacaggtctaagcca
gatggaactccagcattgacaggagaaatggacacagcccccatccctca
cccagaagctatcttcaactaataactgccaacaaaggaaaactagtttt
ctccaatggagcctcactggggtatataaaccacacaagggca
gaattcttttgttggccaagaactcaagccttcttgtgaagaataagaga
gacagtaattctctcttgcaagtctgcacacacaaggaggaggcggaggg
gcttcagtttgcatacttaggcttcatatttaggaaaggtccttcctaca
gagacctaccgcagttacatcacaggctccacctccgcctgccaggctgc
ttctcccagtcggaggtcagtgtgtgttgctgtgttcaattaatgaagat
ttaaaaaaaaaactgaaatgaaaatttgctccttttctctattgtgtctt
gctgattcaactaaaacatatatgaatgctagctttccaagagattttga
caccagcgtcacatgtctgtgctattgtgctgaaaaatcattgataggtg
gtattataaaggaattccatttctatagaattaacaaaataagggaacta
ttatgtaacaggcaacatctcctagagcaagtcaccaaaccgctcagaaa
taaacccagctgcgttcacagatgtaaaaatctggctaattgggaagttt
gcagagctcagacacaactcccaggtgtgtcaatgaagctgaccccacat
cctccaaggtttttttttttttttaatcatttttagagttgttggattta
gcaaataaaaatttaggttgcttcactaaattttaatttcaaatcagcag
cagatactgtttgaatttaaatatgtcactatgatacttggaattatact
tttaaaattattagttgtttctctgaaatttagtttggattgggaagact
tttttttcttctggaaaccctataatgaaaacatttctttcctccctttt
tgggtcacttatgggttgaaaaaacaaagtggagcagaagtcatatgctg
ttctgcagacatctggggcaagctcagctcttgagctatagagagtaact
catgcctgaaagtggggattctctgtctgcacatattgccaatactctgt
aggttctgtgggattgcaggatccaggatgagaggaacaggactagggat
ggattactcaacttatgtaggatgccttgcagaagtggaggtgtgtttta
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53739490_53740390
seq2: B6Ng01-052P03.b_44_945

seq1  GAATTCAAAGGGTAAGCAAATATATCCCCCTCCTCGAAGGGAAGAGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGGTAAGCAAATATATCCCCCTCCTCGAAGGGAAGAGATAC  50

seq1  AAAGTCAAGTTGCCAGGGTGGAGTGTAGAGAGTGGAGTAGAAGTGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGTTGCCAGGGTGGAGTGTAGAGAGTGGAGTAGAAGTGGAGAT  100

seq1  ACAGTGGCATGGAAGCTAGTCAGTTAAGGTCAGAAACCACAGGGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCATGGAAGCTAGTCAGTTAAGGTCAGAAACCACAGGGTTCTCA  150

seq1  CCTTCTGAATGCCAGGTTTGGACTTTATCCCATAAGAATGAGGAATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAATGCCAGGTTTGGACTTTATCCCATAAGAATGAGGAATACTT  200

seq1  GAAATCATGACATAAGTTTGGGTTTTAAAAAGATCTTTCTCTGATAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGACATAAGTTTGGGTTTTAAAAAGATCTTTCTCTGATAGTAG  250

seq1  CATCATAAAAAGTTTGGAAGGAGCAAGGAAAGGAACTTTACCTTCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAAAAGTTTGGAAGGAGCAAGGAAAGGAACTTTACCTTCAAGCA  300

seq1  AGGGAAGCTTGAAGGTAAAGTTCATTTGGGGAAGTTACTGTGACAGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCTTGAAGGTAAAGTTCATTTGGGGAAGTTACTGTGACAGTCTG  350

seq1  TGAATTGGGGTTTGAGCAGAACCTATGATAATTTATTCCATCTAGTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGGGGTTTGAGCAGAACCTATGATAATTTATTCCATCTAGTTAGC  400

seq1  CAAGTATGGTTGTTTGGATGAGAATGGTCCCTGCAAACTCTTACGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGGTTGTTTGGATGAGAATGGTCCCTGCAAACTCTTACGTTTGA  450

seq1  ATCCTTAGTCACCAGGGAGTGGAACTGTTTGAGAAGGATTGGGAGGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGTCACCAGGGAGTGGAACTGTTTGAGAAGGATTGGGAGGTGTG  500

seq1  GCCTTGGTGGAGGAAGGTTTACTATGCAATACTTATAAATCAATTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTGGAGGAAGGTTTACTATGCAATACTTATAAATCAATTTCTTT  550

seq1  CTCAGCTATCATCAGAGAAGCTTCCTCCTGCAGCAGATGGGAGCAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTATCATCAGAGAAGCTTCCTCCTGCAGCAGATGGGAGCAAATAC  600

seq1  AGAGACCACGGATGGACAATGTGTAGAGAGTGTGAGACCTTGGATACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCACGGATGGACAATGTGTAGAGAGTGTGAGACCTTGGATACTTC  650

seq1  AGTCCTAAATGGGATGTCTTCATCAAAACCCTCCCCTCGAGGCTCAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAATGGGATGTCTTCATCAAAACCCTCCCCTCGAGGCTCAGGGA  700

seq1  ACCCTGTAGAAGAAGGTAGACAGATTGTAAGAGTCAGAGAAAATGTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTAGAAGAAGGTAGACAGATTGTAAGAGTCAGAGAAAATGTAGGA  750

seq1  CACCAAGGAAACAAGGCCCTCTAGACACAACA-GGGCAGGTGCACATATG  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACCAAGGAAACAAGGCCCTCTAGACACAACAGGGGCAGGTGCACATATG  800

seq1  AACTCACAGAGACTGCAGCAGCCTACACAGGTCTGCACAGGTCTAAGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGAGACTGCAGCAGCCTACACAGGTCTGCACAGGTCTAAGCCA  850

seq1  GATGGAACTCCAGCATTGACAGGAGAAATGGACACAGCCCCCATCCCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACTCCAGCATTGACAGGAGAAATGGACACAGCCCCCATCCCTCA  900

seq1  CC  901
      ||
seq2  CC  902

seq1: chr9_53820235_53821357
seq2: B6Ng01-052P03.g_68_1172 (reverse)

seq1  ACACA-CAAACACACCTCACACTTCTGGCAAAGCAACTCCTACATAAGTT  49
      |||||  ||||||||||| ||||||| |||| |||  |||||||||||||
seq2  ACACATAAAACACACCTC-CACTTCT-GCAAGGCA--TCCTACATAAGTT  46

seq1  GATGTAAATCCATCCCTAGTCCCTGTTTCTTCTCATCTTTGGATTCTTGG  99
      || || |||||||||||||| |||| ||| |||||||  ||||| ||  |
seq2  GA-GT-AATCCATCCCTAGT-CCTG-TTCCTCTCATC-CTGGATCCT--G  89

seq1  CAATTCCCACAGAACCTAACAAGAAGTATTTGGCAAATATGTGCAGAACA  149
      ||| ||||||||||||| |||   |||| ||||| ||||||||||| |||
seq2  CAA-TCCCACAGAACCT-ACA--GAGTA-TTGGC-AATATGTGCAG-ACA  132

seq1  GAGAATCCCCACTTTCAGGCATGAGTTACTCTCTATAGCTCAAGAGCTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCCCACTTTCAGGCATGAGTTACTCTCTATAGCTCAAGAGCTGA  182

seq1  GCTTGCCCCAGATTGTCTGCAGAACAGCATATGACTTCTGCTCCACTTTG  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCCCAGA-TGTCTGCAGAACAGCATATGACTTCTGCTCCACTTTG  231

seq1  TTTTTTCAACCCATAAGTGACCCAAAAAGGGAGGAAAGAAATGTTTTCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAACCCATAAGTGACCCAAAAAGGGAGGAAAGAAATGTTTTCAT  281

seq1  TATAGGGTTTCCAGAAGAAAAAAAAGTCTTCCCAATCCAAACTAAATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGTTTCCAGAAGAAAAAAAAGTCTTCCCAATCCAAACTAAATTTC  331

seq1  AGAGAAACAACTAATAATTTTAAAAGTATAATTCCAAGTATCATAGTGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAACTAATAATTTTAAAAGTATAATTCCAAGTATCATAGTGAC  381

seq1  ATATTTAAATTCAAACAGTATCTGCTGCTGATTTGAAATTAAAATTTAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATTCAAACAGTATCTGCTGCTGATTTGAAATTAAAATTTAGT  431

seq1  GAAGCAACCTAAATTTTTATTTGCTAAATCCAACAACTCTAAAAATGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACCTAAATTTTTATTTGCTAAATCCAACAACTCTAAAAATGATT  481

seq1  AAAAAAAAAAAAAAACCTTGGAGGATGTGGGGTCAGCTTCATTGACACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACCTTGGAGGATGTGGGGTCAGCTTCATTGACACAC  531

seq1  CTGGGAGTTGTGTCTGAGCTCTGCAAACTTCCCAATTAGCCAGATTTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTTGTGTCTGAGCTCTGCAAACTTCCCAATTAGCCAGATTTTTA  581

seq1  CATCTGTGAACGCAGCTGGGTTTATTTCTGAGCGGTTTGGTGACTTGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGAACGCAGCTGGGTTTATTTCTGAGCGGTTTGGTGACTTGCTC  631

seq1  TAGGAGATGTTGCCTGTTACATAATAGTTCCCTTATTTTGTTAATTCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATGTTGCCTGTTACATAATAGTTCCCTTATTTTGTTAATTCTAT  681

seq1  AGAAATGGAATTCCTTTATAATACCACCTATCAATGATTTTTCAGCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGAATTCCTTTATAATACCACCTATCAATGATTTTTCAGCACAA  731

seq1  TAGCACAGACATGTGACGCTGGTGTCAAAATCTCTTGGAAAGCTAGCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGACATGTGACGCTGGTGTCAAAATCTCTTGGAAAGCTAGCATT  781

seq1  CATATATGTTTTAGTTGAATCAGCAAGACACAATAGAGAAAAGGAGCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGTTTTAGTTGAATCAGCAAGACACAATAGAGAAAAGGAGCAAA  831

seq1  TTTTCATTTCAGTTTTTTTTTTAAATCTTCATTAATTGAACACAGCAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTCAGTTTTTTTTTTAAATCTTCATTAATTGAACACAGCAACA  881

seq1  CACACTGACCTCCGACTGGGAGAAGCAGCCTGGCAGGCGGAGGTGGAGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGACCTCCGACTGGGAGAAGCAGCCTGGCAGGCGGAGGTGGAGCC  931

seq1  TGTGATGTAACTGCGGTAGGTCTCTGTAGGAAGGACCTTTCCTAAATATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTAACTGCGGTAGGTCTCTGTAGGAAGGACCTTTCCTAAATATG  981

seq1  AAGCCTAAGTATGCAAACTGAAGCCCCTCCGCCTCCTCCTTGTGTGTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAGTATGCAAACTGAAGCCCCTCCGCCTCCTCCTTGTGTGTGCA  1031

seq1  GACTTGCAAGAGAGAATTACTGTCTCTCTTATTCTTCACAAGAAGGCTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCAAGAGAGAATTACTGTCTCTCTTATTCTTCACAAGAAGGCTTG  1081

seq1  AGTTCTTGGCCAACAAAAGAATTC  1123
      ||||||||||||||||||||||||
seq2  AGTTCTTGGCCAACAAAAGAATTC  1105