BAC Information

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BAC

Clone NameB6Ng01-053J04
Chromosome9 (Build37)
Map Location 99,982,708 - 100,028,564
singlet/doubletdoublet
Overlap genenone
Upstream genePik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
Downstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053J04.bB6Ng01-053J04.g
ACCDH876581DH876582
length1,118567
definitionDH876581|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J04, 5' end.DH876582|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,027,438 - 100,028,564)(99,982,708 - 99,983,280)
sequence
gaattcctcttcatacaaatgaagcattcccagaaccgggtcaccagcca
acaataccgaattaccctgaaaacccatactcacttcccaaggtttatat
agcccttgcttacccccaacaaagagagctggtcactgaaagccatctcc
agagaagactttttctcccaaactcatgccgacccagatcctgtctaatc
caccttcccagctaaacttcattccttcaggtccaggctggtggacaatg
ctgtctggatatccagaggggaacagcaggcctggactgacactctaaga
tgatcactctggcattgtgttttaagctagaatggattttgaaagagtta
atcggattcttttttaaatagttgtttttaacttttaaagattataatta
catcactctacccctcccctccctcgctccaaaccatcccatccaccccc
tgcttgctctccttcaaatccatgacctctttaagattcttttttaaaaa
aagagacaaatcttcagtaatcaaaatatcatttcagtgaccaaaacctt
aatgtgactctacttttcagggtaacaggggttaatttgtactgttttgt
tgtagtctaagccagggctatttttcaaaacctaacaagccattgctttc
ttttttgctgcctgtctctctgtgtttaagggaggaatcacaatgtatcc
ttttacatttttaaattcctatccctgagtccagtttactagaaataatg
gctaatgtttgtcttcaagctccagaaagccatgggagcgaggctggaaa
gggcagtcagtaatttaggagggtcactctcttcaggattttatactgtt
ttctagggagttgagtccatattgattcttaatttatgggatggctattt
cttaagggaactgatctccagattctttgagtaatgatacacacgcgcag
tttattcaccgtagaatatttcttggtagacattgtaaaactcatggctc
ttcactcattgtatggctgagaaatatctggcccaatatatttcaactga
ggcagatagaagtattaataaaaatgttagtgggaggactgaacccttaa
agaaataacgagatgaga
tttttgaagtatttaaatatggacaatgggatagagaagagtgagttatt
gaatatcagttaggcagtattaatataatcacggcttccatttttatata
gacacttcatctatatgtatagtttccattaggaataaagtagacactcc
ctctccccttcctcaagtcattatgatttttaaaaactataatgaaactc
ttaaaagttaatagctgacttgtaaatcctcagcttaaaatttttaatta
aaaaaaataagttttagaactctagaaaattgaaagggatttttccccct
tgcttgtcttttaaaacaaaaagacttatgagacttccctaacactaacc
tcttgaactgcagagggctttcaccacacgctcactcttgaaaatatgcc
tgactccttggatggaagctggggatcagggcaagtgtcctcacttccag
gtaatgtggagagggagggtgttggtgttcaaagtctttcagaaacacac
cagaataataattcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100027438_100028564
seq2: B6Ng01-053J04.b_46_1163 (reverse)

seq1  TCTCATTCTGTTATTTCTTTAAAGGGTTCCAAGTCCT-CCACTAACATTT  49
      ||||||   ||||||||||| ||||||||  |||||| ||||||||||||
seq2  TCTCATCTCGTTATTTCTTT-AAGGGTTC--AGTCCTCCCACTAACATTT  47

seq1  TTATTAATACTTTCCTATCCTGCCTCAGTTGAAATATATTGGGCCAGATA  99
      ||||||||||||  |||| |||||||||||||||||||||||||||||||
seq2  TTATTAATACTT--CTAT-CTGCCTCAGTTGAAATATATTGGGCCAGATA  94

seq1  ATTTTCTCAAGGCCATACAATGAAGTG-AGAGCCATGAGGTTTTACAATG  148
        |||||||  ||||||||||| |||| |||||||||| |||||||||||
seq2  --TTTCTCA--GCCATACAATG-AGTGAAGAGCCATGA-GTTTTACAATG  138

seq1  TCTACCCAAGAAATATTCTACGGTGAATAAACTGCGCGTGTGTATCATTA  198
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTA-CCAAGAAATATTCTACGGTGAATAAACTGCGCGTGTGTATCATTA  187

seq1  CTCAAAGAATCTGGAGATCAGTTCCC-TAAGAAATAGCCATCCCATAAAT  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTCAAAGAATCTGGAGATCAGTTCCCTTAAGAAATAGCCATCCCATAAAT  237

seq1  TAAGAATCAATATGGACTCAACTCCCTAG-AAACAGTATAAAATCCTGAA  296
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAGAATCAATATGGACTCAACTCCCTAGAAAACAGTATAAAATCCTGAA  287

seq1  GAGAGTGACCCTCCTAAATTACCTGACTGCCC-TTCCAGCCTCGCTCCCA  345
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  GAGAGTGACCCTCCTAAATTA-CTGACTGCCCTTTCCAGCCTCGCTCCCA  336

seq1  TGGCTTTCTGGAGCTTGAAGACAAACATTAGCCATTATTTCTAGTAAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCTGGAGCTTGAAGACAAACATTAGCCATTATTTCTAGTAAACT  386

seq1  GGACTCAGGGATAGGAATTTAAAAATGTAAAAGGATACATTGTGATTCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGGGATAGGAATTTAAAAATGTAAAAGGATACATTGTGATTCCT  436

seq1  CCCTTAAACACAGAGAGACAGGCAGCAAAAAAGAAAGCAATGGCTTGTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAACACAGAGAGACAGGCAGCAAAAAAGAAAGCAATGGCTTGTTA  486

seq1  GGTTTTGAAAAATAGCCCTGGCTTAGACTACAACAAAACAGTACAAATTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGAAAAATAGCCCTGGCTTAGACTACAACAAAACAGTACAAATTA  536

seq1  ACCCCTGTTACCCTGAAAAGTAGAGTCACATTAAGGTTTTGGTCACTGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTTACCCTGAAAAGTAGAGTCACATTAAGGTTTTGGTCACTGAA  586

seq1  ATGATATTTTGATTACTGAAGATTTGTCTCTTTTTTTAAAAAAGAATCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTTGATTACTGAAGATTTGTCTCTTTTTTTAAAAAAGAATCTT  636

seq1  AAAGAGGTCATGGATTTGAAGGAGAGCAAGCAGGGGGTGGATGGGATGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTCATGGATTTGAAGGAGAGCAAGCAGGGGGTGGATGGGATGGT  686

seq1  TTGGAGCGAGGGAGGGGAGGGGTAGAGTGATGTAATTATAATCTTTAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCGAGGGAGGGGAGGGGTAGAGTGATGTAATTATAATCTTTAAAA  736

seq1  GTTAAAAACAACTATTTAAAAAAGAATCCGATTAACTCTTTCAAAATCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAACAACTATTTAAAAAAGAATCCGATTAACTCTTTCAAAATCCA  786

seq1  TTCTAGCTTAAAACACAATGCCAGAGTGATCATCTTAGAGTGTCAGTCCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTTAAAACACAATGCCAGAGTGATCATCTTAGAGTGTCAGTCCA  836

seq1  GGCCTGCTGTTCCCCTCTGGATATCCAGACAGCATTGTCCACCAGCCTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTGTTCCCCTCTGGATATCCAGACAGCATTGTCCACCAGCCTGG  886

seq1  ACCTGAAGGAATGAAGTTTAGCTGGGAAGGTGGATTAGACAGGATCTGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGGAATGAAGTTTAGCTGGGAAGGTGGATTAGACAGGATCTGGG  936

seq1  TCGGCATGAGTTTGGGAGAAAAAGTCTTCTCTGGAGATGGCTTTCAGTGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCATGAGTTTGGGAGAAAAAGTCTTCTCTGGAGATGGCTTTCAGTGA  986

seq1  CCAGCTCTCTTTGTTGGGGGTAAGCAAGGGCTATATAAACCTTGGGAAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTCTTTGTTGGGGGTAAGCAAGGGCTATATAAACCTTGGGAAGT  1036

seq1  GAGTATGGGTTTTCAGGGTAATTCGGTATTGTTGGCTGGTGACCCGGTTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGGTTTTCAGGGTAATTCGGTATTGTTGGCTGGTGACCCGGTTC  1086

seq1  TGGGAATGCTTCATTTGTATGAAGAGGAATTC  1127
      ||||||||||||||||||||||||||||||||
seq2  TGGGAATGCTTCATTTGTATGAAGAGGAATTC  1118

seq1: chr9_99982708_99983280
seq2: B6Ng01-053J04.g_67_639

seq1  GAATTCTTTTTGAAGTATTTAAATATGGACAATGGGATAGAGAAGAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGAAGTATTTAAATATGGACAATGGGATAGAGAAGAGTGA  50

seq1  GTTATTGAATATCAGTTAGGCAGTATTAATATAATCACGGCTTCCATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGAATATCAGTTAGGCAGTATTAATATAATCACGGCTTCCATTTT  100

seq1  TATATAGACACTTCATCTATATGTATAGTTTCCATTAGGAATAAAGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGACACTTCATCTATATGTATAGTTTCCATTAGGAATAAAGTAGA  150

seq1  CACTCCCTCTCCCCTTCCTCAAGTCATTATGATTTTTAAAAACTATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTCTCCCCTTCCTCAAGTCATTATGATTTTTAAAAACTATAATG  200

seq1  AAACTCTTAAAAGTTAATAGCTGACTTGTAAATCCTCAGCTTAAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTAAAAGTTAATAGCTGACTTGTAAATCCTCAGCTTAAAATTTT  250

seq1  TAATTAAAAAAAATAAGTTTTAGAACTCTAGAAAATTGAAAGGGATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAAAAATAAGTTTTAGAACTCTAGAAAATTGAAAGGGATTTTT  300

seq1  CCCCCTTGCTTGTCTTTTAAAACAAAAAGACTTATGAGACTTCCCTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTGCTTGTCTTTTAAAACAAAAAGACTTATGAGACTTCCCTAACA  350

seq1  CTAACCTCTTGAACTGCAGAGGGCTTTCACCACACGCTCACTCTTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCTTGAACTGCAGAGGGCTTTCACCACACGCTCACTCTTGAAAA  400

seq1  TATGCCTGACTCCTTGGATGGAAGCTGGGGATCAGGGCAAGTGTCCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGACTCCTTGGATGGAAGCTGGGGATCAGGGCAAGTGTCCTCAC  450

seq1  TTCCAGGTAATGTGGAGAGGGAGGGTGTTGGTGTTCAAAGTCTTTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTAATGTGGAGAGGGAGGGTGTTGGTGTTCAAAGTCTTTCAGAA  500

seq1  ACACACCAGAATAATAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGAATAATAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  550

seq1  TTCTTCTTCTTCTTCTTCTTCTT  573
      |||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTT  573