BAC Information

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BAC

Clone NameB6Ng01-054A08
Chromosome9 (Build37)
Map Location 94,910,612 - 95,034,355
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneLOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054A08.bB6Ng01-054A08.g
ACCDH876891DH876892
length1,211874
definitionDH876891|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A08, 5' end.DH876892|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,033,140 - 95,034,355)(94,910,612 - 94,911,483)
sequence
gaattcttaagtgttctcaagaccaagatttggactttcttccattgaat
aacaatgatacactcacgaacttggagcctcaggtttcccagctctgcat
gggaactggaaattcaagagtgttgaattgtaccttttatttgccttgct
acatcttagaagcagaatgatggatgtatatggaatttctggctccttta
ttatcttctatttctgggaacatttaaaaatggctaggcaatctgatctt
tcttcctccctccccccttcaaacgagggaatggagtagagattgggaaa
tgactgtgcacagcaggaagtggatagttttctttttactgagccctgaa
aatgtggcagaaccatgagaggagcagttatgatggtcttatttatttta
ggtttatttggacagataaaggataaaccaaaggctctggccagaaatct
acaaaagccagacactgaagcaagaagcaaatgaaatgattattataagg
attctgaaattatttcaacaatgctaggaggtcccctctgggttcccaag
ttgcttttcaggtggttcatgcacacggaattggcttttggtattttgcc
ttacaacctccctcaggaatggagagttttatgtggtaatctcaaaattt
atgccttgatttactaattatcaaggagagaatgaaattttttgcattaa
agagaaagatttcaggattccgaagggagattatcacgtaaccaaaaggt
aaagggaaagcctttgaagttacctttgtaaaaggtcaaccatcaattct
cagtctccacacagaagcagtttatgcaaatgctctcactttcccagaac
ccagatacatttgtaaatgttccaaagaaagggagttaggaaatgtatgt
gtaagaaggaaacattaaggcatttaactatcaaagatgggcaaaactct
gagatgcctcccaggtacctccagatactcatagctagcctgtactacca
gatgggccagcttcagggtaagctgaaaaagaaaggcctggtccattcga
cttgggctggtacagatggacatgcatacagggaagaaaaattgtttggc
tggagaaatgcaatattaatgtttaaatgatatctacaggttctttgatt
ctactttctttggaactggaaactaattttctcctcacactgggagtcgg
agttgcttaaa
gaattcacccacagattttcattaagtgcctcaagaaggaaataattaca
ctgcctgttcattcagaccacgatgtgatgttccatgctagagctagaca
gaggcgtgctaatcagtggggccaccttgctattaaaggaacctttttaa
aatgctaacaactatcacaatttaaaagaagcgaatctatcagattgtca
aaggtttttaaaatttgataaaaatgaatgttgtcaggagcgtggagaga
agggtcccctctgcagcgtgagcagagatgcaaattgcctcattctttct
gaagggcaggctggtgggatgcttaaaacggaaaattaatgtatctccac
tgacagagaggcccatgtcaggaaatttacctgaggagtaatcactcact
tgggagagaagcctgtgcaaagatgctctgggcagcattgtttataaggg
aaaagatctgaaaataaccaggtatctggttagcagtagaatgaagttaa
atttggtaggaggaaacatatagacagctggagtgccacagttaaggatt
gtgtagcacctttaagttcaggtgaatggaaagaggttaaaatactcttg
cattatctgtccatgtgcaattattattgaagttatctatacaaaatgtg
ctcagaatcatccaatattagctatattgactagatgtctgtgcttagac
ggatggaaagaccactgaagcagatgctctacagaaaggataaatgctgt
tgtgttgctgtgcctttgtctacactgaaaaacaacctttaggtctttgg
tcctgtgaaggcttgatgccccactgtagaggaatgctagggtgggaaaa
caggagtaggtggggtgggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95033140_95034355
seq2: B6Ng01-054A08.b_45_1255 (reverse)

seq1  TTTAAGCACATCCGACTCACAGTGTTTGAGAG-AAATTAGGTTCCAGTTT  49
      ||||||||  |||||||| ||||||  | ||| ||||||| |||||| ||
seq2  TTTAAGCAACTCCGACTCCCAGTGTGAG-GAGAAAATTAGTTTCCAG-TT  48

seq1  CTAAAGAAAGTAGAATCAAAGAACTTGTAGATAATCAATTTAAACATTAA  99
      | |||||||||||||||||||||| ||||||| ||| |||||||||||||
seq2  CCAAAGAAAGTAGAATCAAAGAACCTGTAGAT-ATC-ATTTAAACATTAA  96

seq1  TATTGCATTTTCTTCAGCCAAACAA-TTATCTTCCCTGTATGCATGTCCA  148
      ||||||| ||||| ||||||||||| || |||||||||||||||||||||
seq2  TATTGCA-TTTCTCCAGCCAAACAATTTTTCTTCCCTGTATGCATGTCCA  145

seq1  TCTGTTACCAGCCCAAGTCGAATGGACCAGGCCCTTTCTTTTTCAGCTTA  198
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTG-TACCAGCCCAAGTCGAATGGACCAGG-CCTTTCTTTTTCAGCTTA  193

seq1  CCCTGGAGCTGGCCCATCTGGTAGTACAGGCTAGCTATGAGTATCTGGAG  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGCTGGCCCATCTGGTAGTACAGGCTAGCTATGAGTATCTGGAG  243

seq1  GTACCTGGGAGGCATCTCAGAGTTTTGCCCATCTTTTGATAGTTAAATGC  298
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTACCTGGGAGGCATCTCAGAGTTTTGCCCATC-TTTGATAGTTAAATGC  292

seq1  CTTAATGTTTCCTTCTTACACATACATTTCCTAACTCCC-TTCTTTGGAA  347
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTAATGTTTCCTTCTTACACATACATTTCCTAACTCCCTTTCTTTGGAA  342

seq1  CATTTACAAATGTATCTGGGTTCTGGGAAAGTGAGAGCATTTGCATAAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAAATGTATCTGGGTTCTGGGAAAGTGAGAGCATTTGCATAAAC  392

seq1  TGCTTCTGTGTGGAGACTGAGAATTGATGGTTGACCTTTTACAAAGGTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTGTGGAGACTGAGAATTGATGGTTGACCTTTTACAAAGGTAA  442

seq1  CTTCAAAGGCTTTCCCTTTACCTTTTGGTTACGTGATAATCTCCCTTCGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGCTTTCCCTTTACCTTTTGGTTACGTGATAATCTCCCTTCGG  492

seq1  AATCCTGAAATCTTTCTCTTTAATGCAAAAAATTTCATTCTCTCCTTGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGAAATCTTTCTCTTTAATGCAAAAAATTTCATTCTCTCCTTGAT  542

seq1  AATTAGTAAATCAAGGCATAAATTTTGAGATTACCACATAAAACTCTCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAAATCAAGGCATAAATTTTGAGATTACCACATAAAACTCTCCA  592

seq1  TTCCTGAGGGAGGTTGTAAGGCAAAATACCAAAAGCCAATTCCGTGTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGGGAGGTTGTAAGGCAAAATACCAAAAGCCAATTCCGTGTGCA  642

seq1  TGAACCACCTGAAAAGCAACTTGGGAACCCAGAGGGGACCTCCTAGCATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACCTGAAAAGCAACTTGGGAACCCAGAGGGGACCTCCTAGCATT  692

seq1  GTTGAAATAATTTCAGAATCCTTATAATAATCATTTCATTTGCTTCTTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATAATTTCAGAATCCTTATAATAATCATTTCATTTGCTTCTTGC  742

seq1  TTCAGTGTCTGGCTTTTGTAGATTTCTGGCCAGAGCCTTTGGTTTATCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTCTGGCTTTTGTAGATTTCTGGCCAGAGCCTTTGGTTTATCCT  792

seq1  TTATCTGTCCAAATAAACCTAAAATAAATAAGACCATCATAACTGCTCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTCCAAATAAACCTAAAATAAATAAGACCATCATAACTGCTCCT  842

seq1  CTCATGGTTCTGCCACATTTTCAGGGCTCAGTAAAAAGAAAACTATCCAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTTCTGCCACATTTTCAGGGCTCAGTAAAAAGAAAACTATCCAC  892

seq1  TTCCTGCTGTGCACAGTCATTTCCCAATCTCTACTCCATTCCCTCGTTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTGTGCACAGTCATTTCCCAATCTCTACTCCATTCCCTCGTTTG  942

seq1  AAGGGGGGAGGGAGGAAGAAAGATCAGATTGCCTAGCCATTTTTAAATGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGGAGGGAGGAAGAAAGATCAGATTGCCTAGCCATTTTTAAATGT  992

seq1  TCCCAGAAATAGAAGATAATAAAGGAGCCAGAAATTCCATATACATCCAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAATAGAAGATAATAAAGGAGCCAGAAATTCCATATACATCCAT  1042

seq1  CATTCTGCTTCTAAGATGTAGCAAGGCAAATAAAAGGTACAATTCAACAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGCTTCTAAGATGTAGCAAGGCAAATAAAAGGTACAATTCAACAC  1092

seq1  TCTTGAATTTCCAGTTCCCATGCAGAGCTGGGAAACCTGAGGCTCCAAGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATTTCCAGTTCCCATGCAGAGCTGGGAAACCTGAGGCTCCAAGT  1142

seq1  TCGTGAGTGTATCATTGTTATTCAATGGAAGAAAGTCCAAATCTTGGTCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAGTGTATCATTGTTATTCAATGGAAGAAAGTCCAAATCTTGGTCT  1192

seq1  TGAGAACACTTAAGAATTC  1216
      |||||||||||||||||||
seq2  TGAGAACACTTAAGAATTC  1211

seq1: chr9_94910612_94911483
seq2: B6Ng01-054A08.g_66_939

seq1  GAATTCACCCACAGATTTTCATTAAGTGCCTCAAGAAGGAAATAATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCACAGATTTTCATTAAGTGCCTCAAGAAGGAAATAATTACA  50

seq1  CTGCCTGTTCATTCAGACCACGATGTGATGTTCCATGCTAGAGCTAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTTCATTCAGACCACGATGTGATGTTCCATGCTAGAGCTAGACA  100

seq1  GAGGCGTGCTAATCAGTGGGGCCACCTTGCTATTAAAGGAACCTTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGTGCTAATCAGTGGGGCCACCTTGCTATTAAAGGAACCTTTTTAA  150

seq1  AATGCTAACAACTATCACAATTTAAAAGAAGCGAATCTATCAGATTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAACAACTATCACAATTTAAAAGAAGCGAATCTATCAGATTGTCA  200

seq1  AAGGTTTTTAAAATTTGATAAAAATGAATGTTGTCAGGAGCGTGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTTAAAATTTGATAAAAATGAATGTTGTCAGGAGCGTGGAGAGA  250

seq1  AGGGTCCCCTCTGCAGCGTGAGCAGAGATGCAAATTGCCTCATTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCCTCTGCAGCGTGAGCAGAGATGCAAATTGCCTCATTCTTTCT  300

seq1  GAAGGGCAGGCTGGTGGGATGCTTAAAACGGAAAATTAATGTATCTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCAGGCTGGTGGGATGCTTAAAACGGAAAATTAATGTATCTCCAC  350

seq1  TGACAGAGAGGCCCATGTCAGGAAATTTACCTGAGGAGTAATCACTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGAGGCCCATGTCAGGAAATTTACCTGAGGAGTAATCACTCACT  400

seq1  TGGGAGAGAAGCCTGTGCAAAGATGCTCTGGGCAGCATTGTTTATAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGAAGCCTGTGCAAAGATGCTCTGGGCAGCATTGTTTATAAGGG  450

seq1  AAAAGATCTGAAAATAACCAGGTATCTGGTTAGCAGTAGAATGAAGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTGAAAATAACCAGGTATCTGGTTAGCAGTAGAATGAAGTTAA  500

seq1  ATTTGGTAGGAGGAAACATATAGACAGCTGGAGTGCCACAGTTAAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAGGAGGAAACATATAGACAGCTGGAGTGCCACAGTTAAGGATT  550

seq1  GTGTAGCACCTTTAAGTTCAGGTGAATGGAAAGAGGTTAAAATACTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCACCTTTAAGTTCAGGTGAATGGAAAGAGGTTAAAATACTCTTG  600

seq1  CATTATCTGTCCATGTGCAATTATTATTGAAGTTATCTATACAAAATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTGTCCATGTGCAATTATTATTGAAGTTATCTATACAAAATGTG  650

seq1  CTCAGAATCATCCAATATTAGCTATATTGACTAGATGTCTGTGCTTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATCATCCAATATTAGCTATATTGACTAGATGTCTGTGCTTAGAC  700

seq1  GGATGGAAAGACCACTGAAGCAGATGCTCTACAG-AAGGATAAATGCTGT  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGATGGAAAGACCACTGAAGCAGATGCTCTACAGAAAGGATAAATGCTGT  750

seq1  TGTGTTGCTGTGCCTTTGTCTACACTGAAAAACAACCTTTAGGTCTTTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGCTGTGCCTTTGTCTACACTGAAAAACAACCTTTAGGTCTTTGG  800

seq1  TCCTGTGAAGGCTTGATGCCCCACTGTAGAGGAATGCTAGGGTGGGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAAGGCTTGATGCCCCACTGTAGAGGAATGCTAGGGTGGGAAAA  850

seq1  CAGGAGTAGGT-GGGTGGGTGGGG  872
      ||||||||||| ||||||||||||
seq2  CAGGAGTAGGTGGGGTGGGTGGGG  874