BAC Information

Click to search

BAC

Clone NameB6Ng01-054H05
Chromosome9 (Build37)
Map Location 88,487,731 - 88,617,722
singlet/doubletdoublet
Overlap geneLOC100039707, LOC100039721
Upstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109
Downstream geneBcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054H05.bB6Ng01-054H05.g
ACCDH877189DH877190
length5911,173
definitionDH877189|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H05, 5' end.DH877190|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,487,731 - 88,488,327)(88,616,529 - 88,617,722)
sequence
tctgtttgggtctgtaccacatttttattaattttatttatttatttttg
tttatttttttcaagacagggtttctctgtgtagccctggctgtccaggc
actcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctc
tgcctcccaagtgctggaattaaaggcatgtaacacctctgcccagcaga
ggccttttctcaatcaggaatccttcttccaaggtgggtgtggaaggcac
tcactcacctttaatcccagtattctggagtcagaagcaatctgtgattc
aaggccagcctgtcctacaaactaagttccaggacagctagagctacata
gtgagacccagactcaaaaaaacctaaataaataaatgattgctctattt
gcatgcacacctgcatgccagaagagggcatcagatcccattacagatgg
ttatgagcctcaatgtggttgctgggaattgaactcaggacctctggaag
aacaactagtgctattccatctttgggacactgggaggagggggtgaagc
ttcagccttgcagatgaggggtggtgctgggggaaggggct
gaattcattttccccaagtcaagtcatagtcaacaatcaggttatatgtc
atcagtctgactttctaatagtcaagaagggatcactgttctttctgctc
ctagaggaagaaactggagaggtttgaacaaaagcagctaaatgaaggaa
tatcaagccattattaaactcgatttgtgtgagagagagacagagacaga
cggagagagagacatatggacagagagcctgagagacagaggcagaaaaa
gacacacagagaaaactatctttcgttaagaccctgctccaatttttaga
tcaaatttgatggcaatatatagaaatcctctattttggtctagatcact
tgcattatgtttcccttgaggctactggtagctcctgtgaagaaagatcc
cctctttccaaggccaggtaaatctttacaaggaatctcaattatgaaca
gtaccttggaggtgattcctcactgaagggatgaagaccctgggcaagtc
agtaatgaacttaacttctgttctttttgtctccacatcgtgagggctag
gattacagacatgttattgccatattcagtttgtgtggtgctggaggttg
agcctccaggctttgtgcatagcaatgccaccatatcataaacagcatgg
tcttctattttattgccacctttaaactggagaagtgggaaggaataagc
aagaagaccaggtaggaagttaattagaatcttacagaggtgagtcagac
ccagtaatcacttttgagctctgatgcccacagtgagtcagtcacttgtt
agaactgttctacaacaccctgaaacagtgccaacagataggggaccaag
tgttcagacatgagactgtggttgggggaatttcaccttcaaccttgaaa
ctgtttgtgtttgaagacacattctcaagtgtagcacagcatgatcctat
cagcacagtcttcctgcctcagtctctgagtgctgagaggagagggtggt
gccaccaagtcagatatttcatgcaaggtttctttgcttttgttttgagt
tcaggtctcaagtcaggagcctggctgcaaaaaggactgttggccttagg
gcctcccttgatctttgctttcctcgagggacctggccttgggctcatgt
ctcccctcccccccaccatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88487731_88488327
seq2: B6Ng01-054H05.b_43_639

seq1  GAATTCTCTGTTTGGGTCTGTACCACATTTTTATTAATTTTATTTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTGGGTCTGTACCACATTTTTATTAATTTTATTTATTTA  50

seq1  TTTTTGTTTATTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTATTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGT  100

seq1  CCAGGCACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  150

seq1  TGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGTAACACCTCTGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGTAACACCTCTGCCC  200

seq1  AGCAGAGGCCTTTTCTCAATCAGGAATCCTTCTTCCAAGGTGGGTGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCCTTTTCTCAATCAGGAATCCTTCTTCCAAGGTGGGTGTGGA  250

seq1  AGGCACTCACTCACCTTTAATCCCAGTATTCTGGAGTCAGAAGCAATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTCACTCACCTTTAATCCCAGTATTCTGGAGTCAGAAGCAATCTG  300

seq1  TGATTCAAGGCCAGCCTGTCCTACAAACTAAGTTCCAGGACAGCTAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAAGGCCAGCCTGTCCTACAAACTAAGTTCCAGGACAGCTAGAGC  350

seq1  TACATAGTGAGACCCAGACTCAAAAAAACCTAAATAAATAAATGATTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTGAGACCCAGACTCAAAAAAACCTAAATAAATAAATGATTGCT  400

seq1  CTATTTGCATGCACACCTGCATGCCAGAAGAGGGCATCAGATCCCATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCATGCACACCTGCATGCCAGAAGAGGGCATCAGATCCCATTAC  450

seq1  AGATGGTTATGAGCCTCAATGTGGTTGCTGGGAATTGAACTCAGGACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTATGAGCCTCAATGTGGTTGCTGGGAATTGAACTCAGGACCTC  500

seq1  TGGAAGAACAACTAGTGCTATTCCATCTTTGGGACACTGGGAGGAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAACAACTAGTGCTATTCCATCTTTGGGACACTGGGAGGAGGGGG  550

seq1  TGAAGCTTCAGCCTTGCAGATGAGGGGTGGTGCTGGGGGAAGGGGCT  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTCAGCCTTGCAGATGAGGGGTGGTGCTGGGGGAAGGGGCT  597

seq1: chr9_88616529_88617722
seq2: B6Ng01-054H05.g_67_1239 (reverse)

seq1  ATGCATGGTGGGGGGGGAGGGAGGAGACAGAGAGGCCAGAGGCAAGGTCC  50
      ||||||||| ||||||||||  |||||||  ||| ||| |||| ||||||
seq2  ATGCATGGT-GGGGGGGAGG--GGAGACA-TGAGCCCA-AGGCCAGGTCC  45

seq1  TCAGAGAGAAAGCAGAAAGGATCAGAGGGAGCCCCTAGAGGCCAAACAGT  100
         ||| ||||||   || ||||| |||||| ||||| ||||| ||||||
seq2  CTCGAG-GAAAGC---AAAGATCA-AGGGAGGCCCTA-AGGCC-AACAGT  88

seq1  CCTTTTATAGCAAGCCAGGCTCCTGACTTGAGACCCTGACTCAAAACAAA  150
      |||||  | || |||||||||||||||||||||||   ||||||||||||
seq2  CCTTT--TTGC-AGCCAGGCTCCTGACTTGAGACCTGAACTCAAAACAAA  135

seq1  AGCAAAGAAACCTTGCATGAAATATCTTGACCTTGGTGGCACACACCTCT  200
      |||||||||||||||||||||||||| ||| |||||||||||   |||||
seq2  AGCAAAGAAACCTTGCATGAAATATC-TGA-CTTGGTGGCACCACCCTCT  183

seq1  CCTCTCAGCACTCAGAAGACTGAGGCAGGAAGACTGTGCTGATAGGATCA  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCACTCAG-AGACTGAGGCAGGAAGACTGTGCTGATAGGATCA  232

seq1  TGCTGTGCTACACCTTGAGAAATGTGTCTTCAAACACAAACAGTTTCAAG  300
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TGCTGTGCTACA-CTTGAG-AATGTGTCTTCAAACACAAACAGTTTCAAG  280

seq1  GTTTGAAGGTGAAATTCCCCCAACCACAGTCTCATGTCTGAACACTTGGT  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTGAAGGTGAAATTCCCCCAACCACAGTCTCATGTCTGAACACTTGGT  329

seq1  CCCCTATCTGTTGGCACTGTTTCAGGGTGTTGTAGAACAGTTCTAACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATCTGTTGGCACTGTTTCAGGGTGTTGTAGAACAGTTCTAACAAG  379

seq1  TGACTGACTCACTGTGGGCATCAGAGCTCAAAAGTGATTACTGGGTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACTCACTGTGGGCATCAGAGCTCAAAAGTGATTACTGGGTCTGA  429

seq1  CTCACCTCTGTAAGATTCTAATTAACTTCCTACCTGGTCTTCTTGCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCTGTAAGATTCTAATTAACTTCCTACCTGGTCTTCTTGCTTAT  479

seq1  TCCTTCCCACTTCTCCAGTTTAAAGGTGGCAATAAAATAGAAGACCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCACTTCTCCAGTTTAAAGGTGGCAATAAAATAGAAGACCATGC  529

seq1  TGTTTATGATATGGTGGCATTGCTATGCACAAAGCCTGGAGGCTCAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGATATGGTGGCATTGCTATGCACAAAGCCTGGAGGCTCAACCT  579

seq1  CCAGCACCACACAAACTGAATATGGCAATAACATGTCTGTAATCCTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCACACAAACTGAATATGGCAATAACATGTCTGTAATCCTAGCC  629

seq1  CTCACGATGTGGAGACAAAAAGAACAGAAGTTAAGTTCATTACTGACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGATGTGGAGACAAAAAGAACAGAAGTTAAGTTCATTACTGACTTG  679

seq1  CCCAGGGTCTTCATCCCTTCAGTGAGGAATCACCTCCAAGGTACTGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTCTTCATCCCTTCAGTGAGGAATCACCTCCAAGGTACTGTTCA  729

seq1  TAATTGAGATTCCTTGTAAAGATTTACCTGGCCTTGGAAAGAGGGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGATTCCTTGTAAAGATTTACCTGGCCTTGGAAAGAGGGGATCT  779

seq1  TTCTTCACAGGAGCTACCAGTAGCCTCAAGGGAAACATAATGCAAGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACAGGAGCTACCAGTAGCCTCAAGGGAAACATAATGCAAGTGAT  829

seq1  CTAGACCAAAATAGAGGATTTCTATATATTGCCATCAAATTTGATCTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCAAAATAGAGGATTTCTATATATTGCCATCAAATTTGATCTAAA  879

seq1  AATTGGAGCAGGGTCTTAACGAAAGATAGTTTTCTCTGTGTGTCTTTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGCAGGGTCTTAACGAAAGATAGTTTTCTCTGTGTGTCTTTTTC  929

seq1  TGCCTCTGTCTCTCAGGCTCTCTGTCCATATGTCTCTCTCTCCGTCTGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTCTCTCAGGCTCTCTGTCCATATGTCTCTCTCTCCGTCTGTC  979

seq1  TCTGTCTCTCTCTCACACAAATCGAGTTTAATAATGGCTTGATATTCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTCACACAAATCGAGTTTAATAATGGCTTGATATTCCTT  1029

seq1  CATTTAGCTGCTTTTGTTCAAACCTCTCCAGTTTCTTCCTCTAGGAGCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCTGCTTTTGTTCAAACCTCTCCAGTTTCTTCCTCTAGGAGCAG  1079

seq1  AAAGAACAGTGATCCCTTCTTGACTATTAGAAAGTCAGACTGATGACATA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGTGATCCCTTCTTGACTATTAGAAAGTCAGACTGATGACATA  1129

seq1  TAACCTGATTGTTGACTATGACTTGACTTGGGGAAAATGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGATTGTTGACTATGACTTGACTTGGGGAAAATGAATTC  1173