BAC Information

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BAC

Clone NameB6Ng01-054L15
Chromosome9 (Build37)
Map Location 115,510,300 - 115,651,482
singlet/doubletdoublet
Overlap genenone
Upstream geneCnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L15.bB6Ng01-054L15.g
ACCDH877395DH877396
length7221,137
definitionDH877395|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L15, 5' end.DH877396|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,650,761 - 115,651,482)(115,510,300 - 115,511,461)
sequence
gaattcaacactaaggcaatttgctaaatgcatgccaggcacattggtaa
catggccccttcctgcttctctggctgaaaaggaatctctctctctctct
ctctctctctctggcaagctcctgagtttctgccacctgggtgtaggctg
ttgtcagggaaaggctgtgcactggggtaaagagcttagaattgaatgag
cgcaacagccacactacggcttcaaccaggaacttcaccagccccatgaa
aactctggaactgtgatgccccctaggagggattctagatggtccaaaaa
gatgggacttgtatttttccacacgagccaggccaggtcttgaggactag
gtgctaggaatgcatgtagtgtggtaccacagccatgattctgcctgtgt
gacaaaccacagcacccactacagtgagccctcaaaagtgctttgaaagg
cgaacacaagttagctccagagtgaagaaggtgagatgaaatactcagag
cagatgcagtttgctgtgaaacatcctggggaccaagggttcatgagcaa
gcaagcagctcaagggaaggcgtcccagggcttcctctgcgcctgctgta
agtcactcatttccatactttgatcttggattctgagctaagatattttg
aaggtttggaagtagaagaagtagaagagatgagcagggagggaaatggt
gaatgagtgggaattggggagg
gaattcatcccttggtcagtttcatgtggttgaaagagcagagcccaggc
tggaggaccagggcagaaggacaccttcaggttttgcaggtctgcaaggg
ctgagaagtgcagcccttggcaacaccagctatgcccagactggcctcca
gcccaccattttggtgctaaggctctcaggctgcttttcagctggcgcta
taggtaacggggctaaatttctcctgtaatctcctatttctttcctgaat
aaaatgtgcagagatgcacactggtccaaagagcccaggaatactacaaa
gtcagagatcctatttaatgatgattaattaattaaaaagcaactatcat
tcagatttaaagcaataacaagagagttcccttaggaagggtagagaaga
cagatacaggcgagatgataagagagagtcctgagaagtgggactagggg
tttgatgttggatagtgacagatgtttaaaatcctgtcctttggccctgt
attccatgaattcagtgagaatctgctttcaccacggactccaagtcgct
ctgaagcacaaaccacaagagaagttttaactgttgcaccgagaatcttt
ggcgacaacagtttcccctccatgattttttttaaatttgccatgtttta
attttgatgttcaaatctagctctgagactcgagcagagaggttagtact
gaaggaagccgctggtcacggaagcctgcagctgccagcaggaagggcag
gcgtgtatgtgctaggtggggcagagatgccagcatctactccagtaagg
catgaaagagccttttactgagggacaagcatccaaccgtctgatagttc
cacgaaagcaatactgtaggcccattgtactctattcggctacttaatta
cagagaaacttacaggttccagtcgacagactcatctaatcaatactgct
tactcgaactctatttcttgtcctacaactcattaatttgaatattattg
atttcagagatagcttagggataataagttcattttctctcagactggtt
gagtttgatccacgggctctaagcaagagaaataaatcctttcatagcca
atgttgtgagaattcgactgatacttcactggtgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_115650761_115651482
seq2: B6Ng01-054L15.b_46_767 (reverse)

seq1  CCTCCCCAATTCCCACTCATTCACCATTTCCCTCCCTGCTCATCTCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAATTCCCACTCATTCACCATTTCCCTCCCTGCTCATCTCTTCT  50

seq1  ACTTCTTCTACTTCCAAACCTTCAAAATATCTTAGCTCAGAATCCAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTACTTCCAAACCTTCAAAATATCTTAGCTCAGAATCCAAGAT  100

seq1  CAAAGTATGGAAATGAGTGACTTACAGCAGGCGCAGAGGAAGCCCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATGGAAATGAGTGACTTACAGCAGGCGCAGAGGAAGCCCTGGGA  150

seq1  CGCCTTCCCTTGAGCTGCTTGCTTGCTCATGAACCCTTGGTCCCCAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCCCTTGAGCTGCTTGCTTGCTCATGAACCCTTGGTCCCCAGGAT  200

seq1  GTTTCACAGCAAACTGCATCTGCTCTGAGTATTTCATCTCACCTTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACAGCAAACTGCATCTGCTCTGAGTATTTCATCTCACCTTCTTCA  250

seq1  CTCTGGAGCTAACTTGTGTTCGCCTTTCAAAGCACTTTTGAGGGCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGCTAACTTGTGTTCGCCTTTCAAAGCACTTTTGAGGGCTCACT  300

seq1  GTAGTGGGTGCTGTGGTTTGTCACACAGGCAGAATCATGGCTGTGGTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGGTGCTGTGGTTTGTCACACAGGCAGAATCATGGCTGTGGTACC  350

seq1  ACACTACATGCATTCCTAGCACCTAGTCCTCAAGACCTGGCCTGGCTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACATGCATTCCTAGCACCTAGTCCTCAAGACCTGGCCTGGCTCGT  400

seq1  GTGGAAAAATACAAGTCCCATCTTTTTGGACCATCTAGAATCCCTCCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAATACAAGTCCCATCTTTTTGGACCATCTAGAATCCCTCCTAG  450

seq1  GGGGCATCACAGTTCCAGAGTTTTCATGGGGCTGGTGAAGTTCCTGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATCACAGTTCCAGAGTTTTCATGGGGCTGGTGAAGTTCCTGGTTG  500

seq1  AAGCCGTAGTGTGGCTGTTGCGCTCATTCAATTCTAAGCTCTTTACCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTAGTGTGGCTGTTGCGCTCATTCAATTCTAAGCTCTTTACCCCA  550

seq1  GTGCACAGCCTTTCCCTGACAACAGCCTACACCCAGGTGGCAGAAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGCCTTTCCCTGACAACAGCCTACACCCAGGTGGCAGAAACTCA  600

seq1  GGAGCTTGCCAGAGAGAGAGAGAGAGAGAGAGAGAGATTCCTTTTCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTGCCAGAGAGAGAGAGAGAGAGAGAGAGAGATTCCTTTTCAGCC  650

seq1  AGAGAAGCAGGAAGGGGCCATGTTACCAATGTGCCTGGCATGCATTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAGGAAGGGGCCATGTTACCAATGTGCCTGGCATGCATTTAGC  700

seq1  AAATTGCCTTAGTGTTGAATTC  722
      ||||||||||||||||||||||
seq2  AAATTGCCTTAGTGTTGAATTC  722

seq1: chr9_115510300_115511461
seq2: B6Ng01-054L15.g_70_1206

seq1  GAATTCATCCCTTGGTCAGTTTCATGTGGTTGAAAGAGCAGAGCCCAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCTTGGTCAGTTTCATGTGGTTGAAAGAGCAGAGCCCAGGC  50

seq1  TGGAGGACCAGGGCAGAAGGACACCTTCAGGTTTTGCAGGTCTGCAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACCAGGGCAGAAGGACACCTTCAGGTTTTGCAGGTCTGCAAGGG  100

seq1  CTGAGAAGTGCAGCCCTTGGCAACACCAGCTATGCCCAGACTGGCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTGCAGCCCTTGGCAACACCAGCTATGCCCAGACTGGCCTCCA  150

seq1  GCCCACCATTTTGGTGCTAAGGCTCTCAGGCTGCTTTTCAGCTGGCGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCATTTTGGTGCTAAGGCTCTCAGGCTGCTTTTCAGCTGGCGCTA  200

seq1  TAGGTAACGGGGCTAAATTTCTCCTGTAATCTCCTATTTCTTTCCTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACGGGGCTAAATTTCTCCTGTAATCTCCTATTTCTTTCCTGAAT  250

seq1  AAAATGTGCAGAGATGCACACTGGTCCAAAGAGCCCAGGAATACTACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGCAGAGATGCACACTGGTCCAAAGAGCCCAGGAATACTACAAA  300

seq1  GTCAGAGATCCTATTTAATGATGATTAATTAATTAAAAAGCAACTATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGATCCTATTTAATGATGATTAATTAATTAAAAAGCAACTATCAT  350

seq1  TCAGATTTAAAGCAATAACAAGAGAGTTCCCTTAGGAAGGGTAGAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTAAAGCAATAACAAGAGAGTTCCCTTAGGAAGGGTAGAGAAGA  400

seq1  CAGATACAGGCGAGATGATAAGAGAGAGTCCTGAGAAGTGGGACTAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAGGCGAGATGATAAGAGAGAGTCCTGAGAAGTGGGACTAGGGG  450

seq1  TTTGATGTTGGATAGTGACAGATGTTTAAAATCCTGTCCTTTGGCCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTGGATAGTGACAGATGTTTAAAATCCTGTCCTTTGGCCCTGT  500

seq1  ATTCCATGAATTCAGTGAGAATCTGCTTTCACCACGGACTCCAAGTCGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGAATTCAGTGAGAATCTGCTTTCACCACGGACTCCAAGTCGCT  550

seq1  CTGAAGCACAAACCACAAGAGAAGTTTTAACTGTTGCACCGAGAATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCACAAACCACAAGAGAAGTTTTAACTGTTGCACCGAGAATCTTT  600

seq1  GGCGACAACAGTTTCCCCTCCATGATTTTTTTTAAATTTGCCATGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACAACAGTTTCCCCTCCATGATTTTTTTTAAATTTGCCATGTTTTA  650

seq1  ATTTTGATGTTCAAATCTAGCTCTGAGACTCGAGCAGAGAGGTTAGTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGTTCAAATCTAGCTCTGAGACTCGAGCAGAGAGGTTAGTACT  700

seq1  GAAGGAAGCCGCTGGTCACGGAAGCCTGCAGCTGCCAGCAGGAAGGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCCGCTGGTCACGGAAGCCTGCAGCTGCCAGCAGGAAGGGCAG  750

seq1  GCGTGTATGTGCTAGGTGGGGCAGAGATGCCAGCATCTACTCCAGTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTATGTGCTAGGTGGGGCAGAGATGCCAGCATCTACTCCAGTAAGG  800

seq1  CATGAAAGAGCCTTTTACTGAGGGACAAGCATCCAACCGTCTGATAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGAGCCTTTTACTGAGGGACAAGCATCCAACCGTCTGATAGTTC  850

seq1  CACGAAAGCAATACTGTTAGGCCCATTGTACTCTATTCGGGCTACTTAAT  900
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  CACGAAAGCAATACTG-TAGGCCCATTGTACTCTATTC-GGCTACTTAAT  898

seq1  TACAGAGAAACTTACAGGTTCCAGTCGACAGACTCATCTAATCAATACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACTTACAGGTTCCAGTCGACAGACTCATCTAATCAATACTG  948

seq1  CTTACTCCGAACTCTAATTTCCTTGTCCTACAACTCATTAAATTTGAAAT  1000
      |||||| |||||||||  || |||||||||||||||||| |||||| |||
seq2  CTTACT-CGAACTCTA--TTTCTTGTCCTACAACTCATT-AATTTG-AAT  993

seq1  ATTATTGATTTTCAAGAGATAGCTTAGGGGATAAATAAGTCCATTTTCTC  1050
      |||||||||||   |||||||||||| ||||| ||||||| |||||||||
seq2  ATTATTGATTT--CAGAGATAGCTTA-GGGAT-AATAAGTTCATTTTCTC  1039

seq1  TCAGGGACCTTGGTTTGAGTTTGATCCACGGGCCTCTAGGCAAGAGAGCA  1100
      |||  |||  ||| |||||||||||||||||| ||||| ||||||||  |
seq2  TCA--GAC--TGG-TTGAGTTTGATCCACGGG-CTCTAAGCAAGAGA-AA  1082

seq1  CAAATCTCTTCATTAGGCAATGTTTGTGGAGTAATCGCACCAGATATACT  1150
       |||||  |||| ||| ||||| |||| ||| | |||    |   |||||
seq2  TAAATCCTTTCA-TAGCCAATG-TTGT-GAGAATTCG----ACTGATACT  1125

seq1  TCACTGGTGCAA  1162
      ||||||||||||
seq2  TCACTGGTGCAA  1137