BAC Information

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BAC

Clone NameB6Ng01-054N21
Chromosome9 (Build37)
Map Location 79,270,369 - 79,271,484
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
Downstream geneLOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054N21.bB6Ng01-054N21.g
ACCDH877492DH877493
length1,2331,116
definitionDH877492|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N21, 5' end.DH877493|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaaacagtagaggacactgctaccactttggctgtccattaga
actagacaatacgttcctattgctgaaatcaattcacactttgggtacat
cacaggcaattagtactatagcttgcagggatcagagtcaggtggcactt
ctgattacttttctctcaagtagcatagaccgttcgagcaccatgaagta
gttagtacagatgacacttcaagttggtaccaacttggttttccataccc
tatgactcaggtaggtggcttctctaggtatagaaacgtatcaccaagtt
ctaagggtaaccaagagctttagcaatagcttctaatgtttggggaatct
agaacactccaatcaccaataattcaaaaggaaggaatcatacctggctt
tgaatttgagagtatgtcttatctagatgagaaatttctccctagttgtg
agataattccattttcacccattttatagtacacttctacagtagtaggt
tttcatgggtctttggtataaattgtctctcagtacccactcctgaatga
tggcctcccatactccaaccatcttaacctttcttgaaccattattgcca
attttgactttatgccaccagtattttgtctcccatgccactgaaatata
cctcgatggaatacccttactagttgtctgacttctataatgttctctgc
tttaaatctatctgatttcaatcttcaaagttattatctaaatatgagac
catatatggatgtttgcatttggggttttgagttgactcatttggaatta
ttatttcagacttcacccatgtacctgcaaatttcatcatttttaacatc
taaaatattgtgtaaatatatcacacttccattatccattcatcaatcga
taaccatctagactacttccatttcatggttagtttgtctacagtagcga
aggacatgaatgagaaagtatctctgtagtacgatgtcgagacctttgga
ctatgcaaggaatagtatagctgaattgcattatagatcttctttttagg
cttttgagggagcctgcactagaatttcacagtgaaaggatcagttgcac
ttctatttcttattgaatttgttggagaatacattggaattatatgtgga
ttgcatggatttgcattgttgttaagatgaactcagaataactacgtgct
gaaccggggggctgcatcctggattcatctcat
gaattcctgacccatggaaactaagaaaaaaatggaatgattggtctttt
tttttctgctattggcgtaattgctgacataccagcagataaccaaaaca
tctgcacgtaattttcaaacaccaaaaagaagcaagaattatgaactcat
aaaaaaatagaaaggcagtggtttgaaaaccatttacactggagaagggc
tgtgtgtctctgtggttccgaagcccctgcctctcccttctccccccctt
cctttctctcatgatgaaagtatacatcatggtgatgtgctttctctgag
agcacagaaagagagaggtggactctgcactgctgcatttgggtggactg
ttccaggctgcctttgcctttgcctgatgtttttaaggctctttcagtgg
gcaagatgttgcacatagttttcaaagtgtgtgccgtggccatgtgacaa
gatggaaagagacagacattgttagaatagccagtggaccattagtagct
tacttcttgtcgcctgtgcttcctgaggttaataaacttcaatttttttt
gaaacctccaataaaatactgtcaaatggcggttttaaaaatttgttctg
aaacttactgctgagaaagatgacactaggacactttcttctcttcagtg
cttagatcttcatattacaatattctccatgtagagctaaatcactaatt
cttacaattgtttctggtaccctccacttcattttaaaaatagttgaggc
taagtagcagtttactgtcacagcagtatattggatagcctgaattctgg
atactggtgtgtgtcccttgctagtcagtggctcctgtgcttttatctct
ctctctctctctctctctctctctctctttatttatttactctccttgga
gcagacctcttgcttgtatccttacaatgccagtattttttgtgctggaa
tatgttttatcactacagttcagaagtcaagatacttcctttttgctttg
aggcttgcattgattcctttttctatgatgaaaacttctgtttattgttt
agctgaactgatgaagaggaacatgggggagatgacatctctgatttttg
ttgggatttatgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79270369_79271484
seq2: B6Ng01-054N21.g_66_1181 (reverse)

seq1  GTCTCATACAAATCCCAACAATAATCAGAGATGTTCATCTCCCCATTGTT  50
      |||||||  |||||||||||| ||||||||||| ||||||||||  ||||
seq2  GTCTCAT--AAATCCCAACAAAAATCAGAGATG-TCATCTCCCCCATGTT  47

seq1  TCTCTTCATCAGTTCAGCTAAAC-ATTAACAG-AGTTTTCATCATAGAAA  98
       |||||||||||||||||||||| || ||||| |||||||||||||||||
seq2  CCTCTTCATCAGTTCAGCTAAACAATAAACAGAAGTTTTCATCATAGAAA  97

seq1  AAG--ATCAATGCAAGCCTCAAAGCAAAAAGGAAGTATCTTGACTTCTGA  146
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCAATGCAAGCCTCAAAGCAAAAAGGAAGTATCTTGACTTCTGA  147

seq1  ACTTGTAGTGATAAAACATATTCCAGCACAAAAAATACTGGCATTGTAAG  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-TGTAGTGATAAAACATATTCCAGCACAAAAAATACTGGCATTGTAAG  196

seq1  GATACAAGCAAGAGGTCTGCTCCAAGGAGAGTAAATAAATAAAGAGAGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAGCAAGAGGTCTGCTCCAAGGAGAGTAAATAAATAAAGAGAGAG  246

seq1  AGAGAGAGAGAGAGAGAGAGAGAGATAAAAGCACAGGAGCCACTGACTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGATAAAAGCACAGGAGCCACTGACTAG  296

seq1  CAAGGGACACACACCAGTATCCAGAATTCAGGCTATCCAATATACTGCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGACACACACCAGTATCCAGAATTCAGGCTATCCAATATACTGCTG  346

seq1  TGACAGTAAACTGCTACTTAGCCTCAACTATTTTTAAAATGAAGTGGAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTAAACTGCTACTTAGCCTCAACTATTTTTAAAATGAAGTGGAGG  396

seq1  GTACCAGAAACAATTGTAAGAATTAGTGATTTAGCTCTACATGGAGAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAAACAATTGTAAGAATTAGTGATTTAGCTCTACATGGAGAATA  446

seq1  TTGTAATATGAAGATCTAAGCACTGAAGAGAAGAAAGTGTCCTAGTGTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATATGAAGATCTAAGCACTGAAGAGAAGAAAGTGTCCTAGTGTCA  496

seq1  TCTTTCTCAGCAGTAAGTTTCAGAACAAATTTTTAAAACCGCCATTTGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCAGCAGTAAGTTTCAGAACAAATTTTTAAAACCGCCATTTGAC  546

seq1  AGTATTTTATTGGAGGTTTCAAAAAAAATTGAAGTTTATTAACCTCAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTATTGGAGGTTTCAAAAAAAATTGAAGTTTATTAACCTCAGGA  596

seq1  AGCACAGGCGACAAGAAGTAAGCTACTAATGGTCCACTGGCTATTCTAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGCGACAAGAAGTAAGCTACTAATGGTCCACTGGCTATTCTAAC  646

seq1  AATGTCTGTCTCTTTCCATCTTGTCACATGGCCACGGCACACACTTTGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGTCTCTTTCCATCTTGTCACATGGCCACGGCACACACTTTGAA  696

seq1  AACTATGTGCAACATCTTGCCCACTGAAAGAGCCTTAAAAACATCAGGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTGCAACATCTTGCCCACTGAAAGAGCCTTAAAAACATCAGGCA  746

seq1  AAGGCAAAGGCAGCCTGGAACAGTCCACCCAAATGCAGCAGTGCAGAGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGGCAGCCTGGAACAGTCCACCCAAATGCAGCAGTGCAGAGTC  796

seq1  CACCTCTCTCTTTCTGTGCTCTCAGAGAAAGCACATCACCATGATGTATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCTCTTTCTGTGCTCTCAGAGAAAGCACATCACCATGATGTATA  846

seq1  CTTTCATCATGAGAGAAAGGAAGGGGGGGAGAAGGGAGAGGCAGGGGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCATGAGAGAAAGGAAGGGGGGGAGAAGGGAGAGGCAGGGGCTT  896

seq1  CGGAACCACAGAGACACACAGCCCTTCTCCAGTGTAAATGGTTTTCAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACCACAGAGACACACAGCCCTTCTCCAGTGTAAATGGTTTTCAAAC  946

seq1  CACTGCCTTTCTATTTTTTTATGAGTTCATAATTCTTGCTTCTTTTTGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTTTCTATTTTTTTATGAGTTCATAATTCTTGCTTCTTTTTGGT  996

seq1  GTTTGAAAATTACGTGCAGATGTTTTGGTTATCTGCTGGTATGTCAGCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAATTACGTGCAGATGTTTTGGTTATCTGCTGGTATGTCAGCAA  1046

seq1  TTACGCCAATAGCAGAAAAAAAAAGACCAATCATTCCATTTTTTTCTTAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCCAATAGCAGAAAAAAAAAGACCAATCATTCCATTTTTTTCTTAG  1096

seq1  TTTCCATGGGTCAGGAATTC  1116
      ||||||||||||||||||||
seq2  TTTCCATGGGTCAGGAATTC  1116