BAC Information

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BAC

Clone NameB6Ng01-056C14
Chromosome9 (Build37)
Map Location 88,154,776 - 88,317,663
singlet/doubletdoublet
Overlap geneEG272633, Nt5e, Snx14, LOC100039601
Upstream geneLOC671706, Tbx18, LOC671731, LOC100039580, LOC384962
Downstream geneSyncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056C14.bB6Ng01-056C14.g
ACCDH878410DH878411
length1,1801,176
definitionDH878410|Mus musculus domesticus DNA, BAC clone: B6Ng01-056C14, 5' end.DH878411|Mus musculus domesticus DNA, BAC clone: B6Ng01-056C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,154,776 - 88,155,980)(88,316,468 - 88,317,663)
sequence
gaattcacaatgcaaaagcggttggatctctgagagttcaaggccagcct
tgtctacatagctagctccaaaccagccaaagctgcatggtaagacccca
ttacaaaacccaaaacaacttttaggggaatgaaaacttgaacatgctag
tgcttctgaataaaatgcctttttaaattttttatttatttatttattgc
tgctggacatgctttcaatgttttctctaacatttctgcctctctctgaa
tccacacagtaacccagacaggcgtggctcatccatgcttctggctccac
ctcgtctgagaagatttcccaccttctgactcattagctaatgtatccat
ctcatccaggactttgaacttctgaggataaaaacaggtaagctctgctt
atctctatagtgctaggcaaatccacaatcaatgtttaaaaagcaatcta
agaaatgaatgaaaaacaaacaaaagagctggcttgccacaacattaagc
agcccatagttcaagctgctaccttggtctgtcacttaaggcagtaggca
taactgcctcatctactttgtatttccttagaccttacacataaaatggt
gtatcatcaatgttcatgttgctctcagataactcagatcagtaactctg
cttttaagactccctacttccctggatctttttatttttctatcaagaga
ctatattttgtgttaaaacatctcaggttacacaagaatgctctttctta
tttttacagtaactgttcgttttgcatctgctgaatggaatgacttcact
agagacctgaagtagtctggtgaggtgggctctgccctctgcagcacaca
tggcttgtcttctagactccagctagccccaccacactgttactgctgtt
cttggtggtcttgcatagtactccaatctcccaaaagggtggagtacctt
gtgcatctaggtcgcaccttcacagtggctttttctggcctcccacatgc
caagcttcagtgttctcatgactcttcatgccttcaaaccagcaccactg
gtgactctattctaacagtttgctgcaacatgagctacacttgggacact
tctggagaccagcttctgcatactgatcccagaaacactccaaatctcac
ttcagggatctgtcttcttaaccaacttat
gaattcactctgtagaccaggctggcctcaaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattacaggcatgcgccaccactgcccagct
gtgtttttaaattttgaacttagacatttttaaatatatgtgtataggtg
tatgtctatgtgagcatatcttgcagaatgcagtacccctggaggcctga
agggagcagtagatcccctggagctggtggtacaggcagttgtgataccc
acactgggtgctgagacctgatcttcagtccctaggaaaagcagccggca
tacttactcccgaactctctctccagccctgtgatttttatttttaaaag
tcagtttatgtgactctatgctagttaaaatttattactaaaagcattgt
aaagcagagattttaaaaatctacttactgtcattttataatggactata
tgaaaaaatttaaaatgagcattatgtgtatttacctatatttgcctgta
taaatacacaggcacatattataattttattttattttttagtgctgagg
gttgaacccaggcccttgcatgtaatctcccaccgagctgcacctgtagt
tctgcctttaaggtttacagttctaataacaattataaaaggataatacg
gtcccctcagaaagttgcagttcatcctgtgagcttgttgtcccttaggt
gcgtggtccacaaaggccattaatctagaacagaggttgtcaaagctgcc
tggagaagagaccctccttgggaatcaccaacagtatggattgttggact
taggcccagattttgatgagaaagtctaggctactgccctgtaaatagta
ttgttaaaactttccgggtagttctgcagcagagacattgaaaagggtcc
ctggttaaatataatccatcgctgttgctttcatgtgcaggctgcaggtg
agtggccacatgctgagggttgaacccagagccggtgcttgacttagcaa
gtgctctatcctggagcttaccccaccttccactcggaaagctctaaatt
gcatatgtggtacatagaaatcaaactcataggcaaattgttactaacat
tttgaatttcgtaattaaaagtgggatagcaattacctggtctcgtaagc
aaattctgatttttgaattctgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88154776_88155980
seq2: B6Ng01-056C14.b_43_1222

seq1  GAATTCACAATGCAAAAGCGGTTGGATCTCTGTGAGTTCAAGGCCAGCCT  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCACAATGCAAAAGCGGTTGGATCTCTGAGAGTTCAAGGCCAGCCT  50

seq1  TGTCTACATAGCTAGCTCCAAACCAGCCAAAGCTGCATGGTAAGACCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACATAGCTAGCTCCAAACCAGCCAAAGCTGCATGGTAAGACCCCA  100

seq1  TTACAAAACCCAAAACAACTTTTAGGGGAATGAAAACTTGAACATGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAACCCAAAACAACTTTTAGGGGAATGAAAACTTGAACATGCTAG  150

seq1  TGCTTCTGAATAAAATGCCTTTTTAAATTTTTTATTTATTTATTTATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGAATAAAATGCCTTTTTAAATTTTTTATTTATTTATTTATTGC  200

seq1  TGCTGGACATGCTTTCAATGTTTTCTCTAACATTTCTGCCTCTCTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGACATGCTTTCAATGTTTTCTCTAACATTTCTGCCTCTCTCTGAA  250

seq1  TCCACACAGTAACCCAGACAGGCGTGGCTCATCCATGCTTCTGGCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACAGTAACCCAGACAGGCGTGGCTCATCCATGCTTCTGGCTCCAC  300

seq1  CTCGTCTGAGAAGATTTCCCACCTTCTGACTCATTAGCTAATGTATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTGAGAAGATTTCCCACCTTCTGACTCATTAGCTAATGTATCCAT  350

seq1  CTCATCCAGGACTTTGAACTTCTGAGGATAAAAACAGGTAAGCTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCAGGACTTTGAACTTCTGAGGATAAAAACAGGTAAGCTCTGCTT  400

seq1  ATCTCTATAGTGCTAGGCAAATCCACAATCAATGTTTAAAAAGCAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATAGTGCTAGGCAAATCCACAATCAATGTTTAAAAAGCAATCTA  450

seq1  AGAAATGAATGAAAAACAAACAAAAGAGCTGGCTTGCCACAACATTAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAATGAAAAACAAACAAAAGAGCTGGCTTGCCACAACATTAAGC  500

seq1  AGCCCATAGTTCAAGCTGCTACCTTGGTCTGTCACTTAAGGCAGTAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATAGTTCAAGCTGCTACCTTGGTCTGTCACTTAAGGCAGTAGGCA  550

seq1  TAACTGCCTCATCTACTTTGTATTTCCTTAGACCTTACACATAAAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCCTCATCTACTTTGTATTTCCTTAGACCTTACACATAAAATGGT  600

seq1  GTATCATCAATGTTCATGTTGCTCTCAGATAACTCAGATCAGTAACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCAATGTTCATGTTGCTCTCAGATAACTCAGATCAGTAACTCTG  650

seq1  CTTTTAAGACTCCCTACTTCCCTGGATCTTTTTATTTTTCTATCAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGACTCCCTACTTCCCTGGATCTTTTTATTTTTCTATCAAGAGA  700

seq1  CTATATTTTGTGTTAAAACATCTCAGGTTACACAAGAATGCTCTTTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTTGTGTTAAAACATCTCAGGTTACACAAGAATGCTCTTTCTTA  750

seq1  TTTTTACAGTAACTGTTCGTTTTGCATCTGCTGAAATGGAATGACTTCAC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTTACAGTAACTGTTCGTTTTGCATCTGCTG-AATGGAATGACTTCAC  799

seq1  TAGAGACCTGAAGTAGTCTGGTGAGGTGGGCTCTGCCCTCTGCAGCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCTGAAGTAGTCTGGTGAGGTGGGCTCTGCCCTCTGCAGCACAC  849

seq1  ATGGCTTGTCTTCTAGACTCCAGCTAGCCCCACCACACTGTTACTGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTCTTCTAGACTCCAGCTAGCCCCACCACACTGTTACTGCTGT  899

seq1  TCTTGGTGGTCTTGCCATAGTACTCCAATCTCCCAAAAGGGTGGAGTACC  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGGTCTTG-CATAGTACTCCAATCTCCCAAAAGGGTGGAGTACC  948

seq1  TTGTTGCATCTAGGTCGCACCTTCACCAGTGGCTTTTTCTGGCCTCCCAC  1000
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTG-TGCATCTAGGTCGCACCTTCA-CAGTGGCTTTTTCTGGCCTCCCAC  996

seq1  AATGCCAAGCTTCAGTTGTTCTCCATGACTCCTTCATGCCTTCAAAACCA  1050
       |||||||||||||| |||||| ||||||| |||||||||||| ||||||
seq2  -ATGCCAAGCTTCAG-TGTTCT-CATGACT-CTTCATGCCTTC-AAACCA  1041

seq1  GCACCACCTGGGTGACTCTTATTCTACCAAGTTTGCTGCCAACATGAGCT  1100
      |||||||   |||||||| ||||||| | ||||||||| |||||||||||
seq2  GCACCAC--TGGTGACTC-TATTCTAAC-AGTTTGCTG-CAACATGAGCT  1086

seq1  ACAACCTTGGG-CACTTCTGGAGCACAGCTTCTGCATACTGATCCCAAGG  1149
      |||  |||||| |||||||||||  ||||||||||||||||||||||  |
seq2  ACA--CTTGGGACACTTCTGGAGACCAGCTTCTGCATACTGATCCCA--G  1132

seq1  AAACACTTCCCAGATCTCACTTCAAGGATCCTGGTCTCTTCTTAATCACA  1199
      |||||||  ||| ||||||||||| |||||    | |||||||||   ||
seq2  AAACACT--CCAAATCTCACTTCAGGGATC----TGTCTTCTTAA--CCA  1174

seq1  ACTTAT  1205
      ||||||
seq2  ACTTAT  1180

seq1: chr9_88316468_88317663
seq2: B6Ng01-056C14.g_68_1243 (reverse)

seq1  CAGACAGAATTTCAAAAATCAGAATTTTGCCTTACAGAGACAGAGTTAAT  50
      ||||||||| |||||||||||||||||   ||||| |||||  || ||||
seq2  CAGACAGAA-TTCAAAAATCAGAATTT--GCTTAC-GAGAC-CAGGTAAT  45

seq1  ATGCTATTACCACTATTAAATTTCAGAAATACAAATTGGTTTAGTTAAAC  100
       ||||| | ||||| ||||  ||  ||||| |||| ||  |||||  |||
seq2  -TGCTA-TCCCACTTTTAA--TTACGAAATTCAAAATG--TTAGT--AAC  87

seq1  AAATTGCCTAATGAGTTTTGATTTCTATGGTACACATATGCATTTAAGAG  150
      || |||||| ||||| |||||||||||||   |||||||||| || ||||
seq2  AATTTGCCT-ATGAG-TTTGATTTCTATGTACCACATATGCAATTTAGAG  135

seq1  CTTTCCGGAGTGGGAGGGTTGGGGTTAGCTCAGGGATAGAGCACTTGCTA  200
      |||||| |||||| |||  |||||| |||||  |||||||||||||||||
seq2  CTTTCC-GAGTGGAAGG--TGGGGTAAGCTCCAGGATAGAGCACTTGCTA  182

seq1  AGTCAGGCACCGGCTCTGGGTTCAACCCTCAGCATGTGGCCACTCACCTG  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGCACCGGCTCTGGGTTCAACCCTCAGCATGTGGCCACTCACCTG  232

seq1  CAGCCTGCACATGAAAGCAACAGCGATGGATTACTATTTAACCAGGGACC  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGCCTGCACATGAAAGCAACAGCGATGGATTA-TATTTAACCAGGGACC  281

seq1  CTTTTC-ATGTCTCTGCTGCAGAACTACCCGGAAAGTTTTTAACAATACT  349
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  CTTTTCAATGTCTCTGCTGCAGAACTACCCGGAAAG-TTTTAACAATACT  330

seq1  ATTTACAGGGCAGTAGCCTAGAACTTTCTCATCAAAATCTGGGCCTAAGT  399
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTACAGGGCAGTAGCCTAG-ACTTTCTCATCAAAATCTGGGCCTAAGT  379

seq1  CCAACAATCCATACTGTTGGTGATTCCCAAGGAGGGTCTCTTCTCCAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATCCATACTGTTGGTGATTCCCAAGGAGGGTCTCTTCTCCAGGC  429

seq1  AGCTTTGACAACCTCTGTTCTAGATTAATGGCCTTTGTGGACCACGCACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGACAACCTCTGTTCTAGATTAATGGCCTTTGTGGACCACGCACC  479

seq1  TAAGGGACAACAAGCTCACAGGATGAACTGCAACTTTCTGAGGGGACCGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGACAACAAGCTCACAGGATGAACTGCAACTTTCTGAGGGGACCGT  529

seq1  ATTATCCTTTTATAATTGTTATTAGAACTGTAAACCTTAAAGGCAGAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCTTTTATAATTGTTATTAGAACTGTAAACCTTAAAGGCAGAACT  579

seq1  ACAGGTGCAGCTCGGTGGGAGATTACATGCAAGGGCCTGGGTTCAACCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGCAGCTCGGTGGGAGATTACATGCAAGGGCCTGGGTTCAACCCT  629

seq1  CAGCACTAAAAAATAAAATAAAATTATAATATGTGCCTGTGTATTTATAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTAAAAAATAAAATAAAATTATAATATGTGCCTGTGTATTTATAC  679

seq1  AGGCAAATATAGGTAAATACACATAATGCTCATTTTAAATTTTTTCATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATATAGGTAAATACACATAATGCTCATTTTAAATTTTTTCATAT  729

seq1  AGTCCATTATAAAATGACAGTAAGTAGATTTTTAAAATCTCTGCTTTACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATTATAAAATGACAGTAAGTAGATTTTTAAAATCTCTGCTTTACA  779

seq1  ATGCTTTTAGTAATAAATTTTAACTAGCATAGAGTCACATAAACTGACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAGTAATAAATTTTAACTAGCATAGAGTCACATAAACTGACTT  829

seq1  TTAAAAATAAAAATCACAGGGCTGGAGAGAGAGTTCGGGAGTAAGTATGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAAATCACAGGGCTGGAGAGAGAGTTCGGGAGTAAGTATGC  879

seq1  CGGCTGCTTTTCCTAGGGACTGAAGATCAGGTCTCAGCACCCAGTGTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCTTTTCCTAGGGACTGAAGATCAGGTCTCAGCACCCAGTGTGGG  929

seq1  TATCACAACTGCCTGTACCACCAGCTCCAGGGGATCTACTGCTCCCTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAACTGCCTGTACCACCAGCTCCAGGGGATCTACTGCTCCCTTCA  979

seq1  GGCCTCCAGGGGTACTGCATTCTGCAAGATATGCTCACATAGACATACAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGGGGTACTGCATTCTGCAAGATATGCTCACATAGACATACAC  1029

seq1  CTATACACATATATTTAAAAATGTCTAAGTTCAAAATTTAAAAACACAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACACATATATTTAAAAATGTCTAAGTTCAAAATTTAAAAACACAGC  1079

seq1  TGGGCAGTGGTGGCGCATGCCTGTAATCCCAGCACTTGGGAGGCAGAGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTGGTGGCGCATGCCTGTAATCCCAGCACTTGGGAGGCAGAGGC  1129

seq1  AGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAATTC  1196
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAATTC  1176