BAC Information

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BAC

Clone NameB6Ng01-056G08
Chromosome9 (Build37)
Map Location 54,555,848 - 54,705,877
singlet/doubletdoublet
Overlap geneDnaja4, Wdr61, Crabp1, Rab7-ps1
Upstream geneLOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850
Downstream geneIreb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056G08.bB6Ng01-056G08.g
ACCDH878565DH878566
length1,1571,090
definitionDH878565|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G08, 5' end.DH878566|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,704,718 - 54,705,877)(54,555,848 - 54,556,945)
sequence
gaattccttctgagatgagatttgagtttttttgttgacacatcagtact
ggtgaaagcagagaaaagagatttattgatcattgtgggcacactgggaa
aaaaagatgaagagattcagtggccctaggtccttcatctatagggcact
gatgtgagctttgggtttagatgttagagtaattggggcaaggggagagc
tatgcctagttaagtaggcttggttaggctcttatggttgggttatcact
gcagcactagttctgtttggcttcctaagacattgctttccactggaggg
aaagcaaactggagcatcagcatctgagattaatggcctcactggggagt
catccattactagggtggcagtttcaatccctgtcatagaggtgctaata
ggtcctgttgttcctagaatcgaagttgaatgcagatctagggcaatgac
ccgaggcatttagggtctccttggaagtctgtaaacactggtaacactgt
cctaatagggataaagagactctaaagagactccagtgctgctgcctctg
actatcagacttctgaaacaatgaaaatttccccaggagtcgcatgctga
aagaatgaaaaatgcagaagtctgatccagccaagggaggaacttgtctc
tgggaaagagtttacacaattattacttgtcagactacctgtcagagaga
ctgaaaggaagacaaggatgggccattggtggcagggacataccttgacc
aagactgcttggttaggcatacctttcatcctctatttatgtcagaatca
aagatagacccaagagatgtgaagacccaagagtgttgtcaactttaata
ggatccagactcacctagcctctggtgcatctgtgaggacatgttcgtgg
ggatggccttgattaggttcgttgataggggatacacactggttgctcat
ggctccatttctggggtaggatcctggactatacaaaaaggagaagtgag
tgctctgttgcccatgtgatcacatgaccagctctccagcttcagctacc
tcagctccctgcattaataggaggtattctgaccactgagacaaaccttt
gtcctcttgaattgcttaactaaaggatattttatcctacaagggggagg
ggggggg
gaattccagtgaagtggctgggtactgtcacccctcatctcggaggaaag
ggttgtggcctgaggaggaacttaactgatctatttctctttctccttgt
cctcagaaaatgaaaatagacggtctttttgttgagttctctaaatgact
gggtagccaggagttagctctccatcttggcagggactagtaggataggt
tggtttaatgacacatcgcttcctgtggggtagggcgggttctgacccaa
ctctagtgttccggcctccagaagagtcttgggacatagtgtaaggcagt
ggtctggctagtcccactaactggctctttgtccctcggcaggcaagaat
gttgtccaccagctgtcagtaactctggaagacttatataatggaatcac
taagaaactggccctccagaaaaatgtaatttgtgagaaatgtgaaggta
agaactaatatccgaatgcctctcagagctcagatcctcgcttctgcttg
agctcagagaaaaagaactcatcttgtcaagtgtgggagtcaagcaggat
ttgtaagcaggaaaccctgaagccacatctgttagtctaaatgtttttat
ttttctgggccggacatctattcagtatgttggcattcattctaaaagtt
tcaatatctggacacagttctcctaatgtaggggttggcagagttttcct
gtagcaggtgacaacagacatctgtgactttgttctgccattacatgagt
gaacgtgccagtgtcccagtaagcccttaatgtgtaaagtttgaattttc
aagaaaagtaaatttggtgaccctacgatccatgttgtcacactgatggg
gtatggtggacctgcactctgacaaggcttctgtcctgtggttccttaca
ggtcccaggctgttgtgcacctgtggcaggggtgtagcaccctggattag
atgtcaacacctggctgtgatctactgactatctcttccaacacccacac
actggtttataagtataggtgctaagcacatggccagctccctgctagaa
ggaaacaagtcttctggttttctcccacctcccagcatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54704718_54705877
seq2: B6Ng01-056G08.b_45_1201 (reverse)

seq1  CCCCCCCCCTGC------TATGATAAAATA--CTTTGATTAAGCAACTC-  41
      |||||||||| |      || |||||||||  ||||  |||||||| || 
seq2  CCCCCCCCCTCCCCCTTGTAGGATAAAATATCCTTTAGTTAAGCAATTCA  50

seq1  AGAGGACAAAGGGTTTGTCTCAGTGGTTAAGAATACATCCCAATAATGGC  91
      |||||||||| ||||||||||||||| | ||||||| ||| | |||| ||
seq2  AGAGGACAAA-GGTTTGTCTCAGTGG-TCAGAATACCTCCTATTAAT-GC  97

seq1  AGGGAAGCTGAGGTAGCTGGAGCTTGGAGAGCTGGTCATGTTGAATCCAC  141
      |||| |||||||||||||| ||| |||||||||||||||| |||   |||
seq2  AGGG-AGCTGAGGTAGCTGAAGC-TGGAGAGCTGGTCATG-TGA--TCAC  142

seq1  AATTGGGCAACAGAGCACTTCACTTTCTCCTTTTTGTATAGTCCAGGATC  191
      |  ||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  A--TGGGCAACAGAGCAC-TCAC-TTCTCCTTTTTGTATAGTCCAGGATC  188

seq1  CTACCCCAGGAAATGGAGCCATGAGCAACCAGTGTGTATCCCCTATCAAC  241
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCA-GAAATGGAGCCATGAGCAACCAGTGTGTATCCCCTATCAAC  237

seq1  GAACCTAATCAAGGCCATCCCCACGAGCATGTCCTCACAGATGCACCAGA  291
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAACCTAATCAAGGCCATCCCCACGAACATGTCCTCACAGATGCACCAGA  287

seq1  GGCTAGGTGAGTCTGGATCCTATT-AAGTTGACAACACTCTTGGGTCTTC  340
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCTAGGTGAGTCTGGATCCTATTAAAGTTGACAACACTCTTGGGTCTTC  337

seq1  ACATCTCTTGGGTCTATCTTTGATTCTGACATAAATAGAGGATGAAAGGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTTGGGTCTATCTTTGATTCTGACATAAATAGAGGATGAAAGGT  387

seq1  ATGCCTAACCAAGCAGTCTTGGTCAAGGTATGTCCCTGCCACCAATGGCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAACCAAGCAGTCTTGGTCAAGGTATGTCCCTGCCACCAATGGCC  437

seq1  CATCCTTGTCTTCCTTTCAGTCTCTCTGACAGGTAGTCTGACAAGTAATA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGTCTTCCTTTCAGTCTCTCTGACAGGTAGTCTGACAAGTAATA  487

seq1  ATTGTGTAAACTCTTTCCCAGAGACAAGTTCCTCCCTTGGCTGGATCAGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTAAACTCTTTCCCAGAGACAAGTTCCTCCCTTGGCTGGATCAGA  537

seq1  CTTCTGCATTTTTCATTCTTTCAGCATGCGACTCCTGGGGAAATTTTCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCATTTTTCATTCTTTCAGCATGCGACTCCTGGGGAAATTTTCAT  587

seq1  TGTTTCAGAAGTCTGATAGTCAGAGGCAGCAGCACTGGAGTCTCTTTAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGAAGTCTGATAGTCAGAGGCAGCAGCACTGGAGTCTCTTTAGA  637

seq1  GTCTCTTTATCCCTATTAGGACAGTGTTACCAGTGTTTACAGACTTCCAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTATCCCTATTAGGACAGTGTTACCAGTGTTTACAGACTTCCAA  687

seq1  GGAGACCCTAAATGCCTCGGGTCATTGCCCTAGATCTGCATTCAACTTCG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCTAAATGCCTCGGGTCATTGCCCTAGATCTGCATTCAACTTCG  737

seq1  ATTCTAGGAACAACAGGACCTATTAGCACCTCTATGACAGGGATTGAAAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGAACAACAGGACCTATTAGCACCTCTATGACAGGGATTGAAAC  787

seq1  TGCCACCCTAGTAATGGATGACTCCCCAGTGAGGCCATTAATCTCAGATG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCTAGTAATGGATGACTCCCCAGTGAGGCCATTAATCTCAGATG  837

seq1  CTGATGCTCCAGTTTGCTTTCCCTCCAGTGGAAAGCAATGTCTTAGGAAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTCCAGTTTGCTTTCCCTCCAGTGGAAAGCAATGTCTTAGGAAG  887

seq1  CCAAACAGAACTAGTGCTGCAGTGATAACCCAACCATAAGAGCCTAACCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGAACTAGTGCTGCAGTGATAACCCAACCATAAGAGCCTAACCA  937

seq1  AGCCTACTTAACTAGGCATAGCTCTCCCCTTGCCCCAATTACTCTAACAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACTTAACTAGGCATAGCTCTCCCCTTGCCCCAATTACTCTAACAT  987

seq1  CTAAACCCAAAGCTCACATCAGTGCCCTATAGATGAAGGACCTAGGGCCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCCAAAGCTCACATCAGTGCCCTATAGATGAAGGACCTAGGGCCA  1037

seq1  CTGAATCTCTTCATCTTTTTTTCCCAGTGTGCCCACAATGATCAATAAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTCTTCATCTTTTTTTCCCAGTGTGCCCACAATGATCAATAAAT  1087

seq1  CTCTTTTCTCTGCTTTCACCAGTACTGATGTGTCAACAAAAAAACTCAAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTCTGCTTTCACCAGTACTGATGTGTCAACAAAAAAACTCAAA  1137

seq1  TCTCATCTCAGAAGGAATTC  1160
      ||||||||||||||||||||
seq2  TCTCATCTCAGAAGGAATTC  1157

seq1: chr9_54555848_54556945
seq2: B6Ng01-056G08.g_70_1159

seq1  GAATTCCAGTGAAGTGGCTGGGTACTGTCACCCCTCATCTCGGAGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAAGTGGCTGGGTACTGTCACCCCTCATCTCGGAGGAAAG  50

seq1  GGTTGTGGCCTGAGGAGGAACTTAACTGATCTATTTCTCTTTCTCCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGGCCTGAGGAGGAACTTAACTGATCTATTTCTCTTTCTCCTTGT  100

seq1  CCTCAGAAAATGAAAATAGACGGTCTTTTTGTTGAGTTCTCTAAATGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAATGAAAATAGACGGTCTTTTTGTTGAGTTCTCTAAATGACT  150

seq1  GGGTAGCCAGGAGTTAGCTCTCCATCTTGGCAGGGACTAGTAGGATAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCCAGGAGTTAGCTCTCCATCTTGGCAGGGACTAGTAGGATAGGT  200

seq1  TGGTTTAATGACACATCGCTTCCTGTGGGGTAGGGCGGGTTCTGACCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAATGACACATCGCTTCCTGTGGGGTAGGGCGGGTTCTGACCCAA  250

seq1  CTCTAGTGTTCCGGCCTCCAGAAGAGTCTTGGGACATAGTGTAAGGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTGTTCCGGCCTCCAGAAGAGTCTTGGGACATAGTGTAAGGCAGT  300

seq1  GGTCTGGCTAGTCCCACTAACTGGCTCTTTGTCCCTCGGCAGGCAAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGCTAGTCCCACTAACTGGCTCTTTGTCCCTCGGCAGGCAAGAAT  350

seq1  GTTGTCCACCAGCTGTCAGTAACTCTGGAAGACTTATATAATGGAATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCACCAGCTGTCAGTAACTCTGGAAGACTTATATAATGGAATCAC  400

seq1  TAAGAAACTGGCCCTCCAGAAAAATGTAATTTGTGAGAAATGTGAAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACTGGCCCTCCAGAAAAATGTAATTTGTGAGAAATGTGAAGGTA  450

seq1  AGAACTAATATCCGAATGCCTCTCAGAGCTCAGATCCTCGCTTCTGCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAATATCCGAATGCCTCTCAGAGCTCAGATCCTCGCTTCTGCTTG  500

seq1  AGCTCAGAGAAAAAGAACTCATCTTGTCAAGTGTGGGAGTCAAGCAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAGAAAAAGAACTCATCTTGTCAAGTGTGGGAGTCAAGCAGGAT  550

seq1  TTGTAAGCAGGAAACCCTGAAGCCACATCTGTTAGTCTAAATGTTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCAGGAAACCCTGAAGCCACATCTGTTAGTCTAAATGTTTTTAT  600

seq1  TTTTCTGGGCCGGACATCTATTCAGTATGTTGGCATTCATTCTAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGGCCGGACATCTATTCAGTATGTTGGCATTCATTCTAAAAGTT  650

seq1  TCAATATCTGGACACAGTTCTCCTAATGTAGGGGTTGGCAGAGTTTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATCTGGACACAGTTCTCCTAATGTAGGGGTTGGCAGAGTTTTCCT  700

seq1  GTAGCAGGTGACAACAGACATCTGTGACTTTGTTCTGCCATTACATGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGTGACAACAGACATCTGTGACTTTGTTCTGCCATTACATGAGT  750

seq1  GAACGTGCCAGTGTCCCAGTAAGCCCTTAATGTGTAAAGTTTGAATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTGCCAGTGTCCCAGTAAGCCCTTAATGTGTAAAGTTTGAATTTTC  800

seq1  AAGAAAAGTAAAATTTGGTGACCCTACGATCCATGTTGTCACACTGAT-G  849
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  AAGAAAAGT-AAATTTGGTGACCCTACGATCCATGTTGTCACACTGATGG  849

seq1  GGTATGGT-GACCTGCACTCTGACAAGGCTTCTGTCCTGTGGTTCCCTAC  898
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  GGTATGGTGGACCTGCACTCTGACAAGGCTTCTGTCCTGTGGTTCCTTAC  899

seq1  A-GTCCCAGGCTGTTGTGCACCTGTGGCATGGGTGTTAGCACCCTGGATT  947
      | ||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  AGGTCCCAGGCTGTTGTGCACCTGTGGCAGGGGTG-TAGCACCCTGGATT  948

seq1  AGATGTCAACACCTGGCTGTGATCTACTTGACTATTCTCTTCCAAACACC  997
      ||||||||||||||||||||||||||| |||||| |||||||| ||||||
seq2  AGATGTCAACACCTGGCTGTGATCTAC-TGACTA-TCTCTTCC-AACACC  995

seq1  CACACACTGTTTTAATAAGTATAGGATGCTAAGCACAGTGCCCAGCTCCC  1047
      ||||||||| ||| ||||||||||| ||||||||||| || |||||||||
seq2  CACACACTGGTTT-ATAAGTATAGG-TGCTAAGCACA-TGGCCAGCTCCC  1042

seq1  TGCTGAGAGGAACACAGCTCTTCTGCTTATCTCCCACCTCCACAGGCATC  1097
      |||| ||| | | |||  ||||||| || |||||||||||| || |||||
seq2  TGCT-AGAAGGAAACAAGTCTTCTGGTTTTCTCCCACCTCC-CA-GCATC  1089

seq1  G  1098
      |
seq2  G  1090