BAC Information

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BAC

Clone NameB6Ng01-056K06
Chromosome9 (Build37)
Map Location 32,183,890 - 32,333,562
singlet/doubletdoublet
Overlap geneKcnj1, Fli1
Upstream genePrdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5
Downstream geneLOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056K06.bB6Ng01-056K06.g
ACCDH878736DH878737
length1,013699
definitionDH878736|Mus musculus domesticus DNA, BAC clone: B6Ng01-056K06, 5' end.DH878737|Mus musculus domesticus DNA, BAC clone: B6Ng01-056K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,183,890 - 32,184,902)(32,332,865 - 32,333,562)
sequence
gaattccagaagctctgtaaagaggtagcatcaatgagcaggagggaggg
ctcagtgatatgagcatgtgccacttttgttagagatgctaagtttggtt
cccagaatccaacaggatgactcacaattgcctgtaactccagtcccagg
gggatctagcccctgggctccagggacacctggactcatgtagacagacc
tacacaaagacacacatatacatggacacaaggaattaaaaataatagac
accttagaaataacagcaagagcccaggaatgatgcgtgacaggcaacct
cagaagtactgacaagcccaaaacacggagcctcactcacttgctcccca
aaacgcctgtgaatgctctggctgcatcctgtcacaagcagctcaaaaac
actgccttaaatctttgaacccaggctatccattgcacggaagaagagac
gaaagacccacagtatggtagtaacttgctcacaggccacaagaaaaaga
ttctgaattctcctctgattgcactgacaccatgtttttggctcagattc
agaaattgtgtttatcggtgtatatcagtgtgccgtctggtcctcaagga
gatgatttaaatatgcactgaacaccacttgaaagcaacaggttagtatg
gttttttttttttttttttttttttttttcagaattagggcaagtaaagt
tctctcaggggactgcccctaagggaaatctcatggttcgttgcccttga
ttaaattcttgggagttttctggctcttttcctaatcagccatttgtcct
tgaagagtgaacttggcaaatgtgaatgactgttactagtgtctcatggg
aaaaaaatgtgcataaaaattggacccatgggattccagtccagtgagaa
gatatcaaagagaataagaagatccagcctcaagtttatctcgcccggcc
accttttattctgatgttattgggggcttgagctacggcaatttgcatgg
agtaaaagtttga
gaattccaggcttgtgctgttgataaagagattcatgtcaaacaaacaag
agtaaagaccatcagagaaatattccgtccaacctgcaccacttagaccc
attgtgttcaggtttatgtcgcctttataaagtgtatccttgctataaaa
cccatgacctttccacagcattcccgtgtgaatagctttgaaattcccgt
gtgtctggccagatactttctaggtgccttatctcattcaccaggggcat
ctcttcggctgtttcttcagagtctccacaaccctaattccttttggtct
tttatcatgtcttaggcaagatgttggccaattcacagggaacctaacat
gacggcccatctgctccgggctttacctttctttctcttctggagagatg
agtgtctgcagcagagttgattctcttgttcccatgcaaggttgtcattg
tctgtcttcaactctggttctatcactaagcacagagaatgaaggaagta
cctatcgagcagaaggagcagtctgccttgaagatgggtgttggggatgg
ttaatgtcagaaaaacggtggccctcacctaatgagcccagggagagctt
tttttactctcactgccttctggaacattaaggagattatgtctcgccag
gtagtggtggcacacgccttttatcccagcacttgggaggcagaggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32183890_32184902
seq2: B6Ng01-056K06.b_47_1059

seq1  GAATTCCAGAAGCTCTGTAAAGAGGTAGCATCAATGAGCAGGAGGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGCTCTGTAAAGAGGTAGCATCAATGAGCAGGAGGGAGGG  50

seq1  CTCAGTGATATGAGCATGTGCCACTTTTGTTAGAGATGCTAAGTTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGATATGAGCATGTGCCACTTTTGTTAGAGATGCTAAGTTTGGTT  100

seq1  CCCAGAATCCAACAGGATGACTCACAATTGCCTGTAACTCCAGTCCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATCCAACAGGATGACTCACAATTGCCTGTAACTCCAGTCCCAGG  150

seq1  GGGATCTAGCCCCTGGGCTCCAGGGACACCTGGACTCATGTAGACAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTAGCCCCTGGGCTCCAGGGACACCTGGACTCATGTAGACAGACC  200

seq1  TACACAAAGACACACATATACATGGACACAAGGAATTAAAAATAATAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAGACACACATATACATGGACACAAGGAATTAAAAATAATAGAC  250

seq1  ACCTTAGAAATAACAGCAAGAGCCCAGGAATGATGCGTGACAGGCAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGAAATAACAGCAAGAGCCCAGGAATGATGCGTGACAGGCAACCT  300

seq1  CAGAAGTACTGACAAGCCCAAAACACGGAGCCTCACTCACTTGCTCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTACTGACAAGCCCAAAACACGGAGCCTCACTCACTTGCTCCCCA  350

seq1  AAACGCCTGTGAATGCTCTGGCTGCATCCTGTCACAAGCAGCTCAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCTGTGAATGCTCTGGCTGCATCCTGTCACAAGCAGCTCAAAAAC  400

seq1  ACTGCCTTAAATCTTTGAACCCAGGCTATCCATTGCACGGAAGAAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTAAATCTTTGAACCCAGGCTATCCATTGCACGGAAGAAGAGAC  450

seq1  GAAAGACCCACAGTATGGTAGTAACTTGCTCACAGGCCACAAGAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCCACAGTATGGTAGTAACTTGCTCACAGGCCACAAGAAAAAGA  500

seq1  TTCTGAATTCTCCTCTGATTGCACTGACACCATGTTTTTGGCTCAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATTCTCCTCTGATTGCACTGACACCATGTTTTTGGCTCAGATTC  550

seq1  AGAAATTGTGTTTATCGGTGTATATCAGTGTGCCGTCTGGTCCTCAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGTGTTTATCGGTGTATATCAGTGTGCCGTCTGGTCCTCAAGGA  600

seq1  GATGATTTAAATATGCACTGAACACCACTTGAAAGCAACAGGTTAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTAAATATGCACTGAACACCACTTGAAAGCAACAGGTTAGTATG  650

seq1  GTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATTAGGGCAAGTAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGAATTAGGGCAAGTAAAGT  700

seq1  TCTCTCAGGTGACTGCCCCTAAGGGAAATCTCATGGTTCGTTGCCCTTGA  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGGGGACTGCCCCTAAGGGAAATCTCATGGTTCGTTGCCCTTGA  750

seq1  TTAAATTCTTGGGAGTTTTCTGGCTC-TTTCCAGATCAGCCATTTGTCCT  799
      |||||||||||||||||||||||||| |||||  ||||||||||||||||
seq2  TTAAATTCTTGGGAGTTTTCTGGCTCTTTTCCTAATCAGCCATTTGTCCT  800

seq1  TGAAGAGTGAACTTGGCAAATGTGAATGACTGTTACTAGTGTCTCAT-GG  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGAAGAGTGAACTTGGCAAATGTGAATGACTGTTACTAGTGTCTCATGGG  850

seq1  AAAAAAATGTGCATAAAATTTGGACCCAT-GGAGTCCAGTCCAGTGATGA  897
      |||||||||||||||||| |||||||||| ||| |||||||||||||  |
seq2  AAAAAAATGTGCATAAAAATTGGACCCATGGGATTCCAGTCCAGTGAGAA  900

seq1  GATATTCAGAGAG-ATAAGAGGATCCAGCCTCAAGTTTATCTGCACAGTC  946
      |||| ||| |||| |||||| |||||||||||||||||||||   | | |
seq2  GATA-TCAAAGAGAATAAGAAGATCCAGCCTCAAGTTTATCTCGCCCGGC  949

seq1  AACCTTTTATTCTGATGTTATTGAGGGCTTGAGCTACCGGCAATTATGCA  996
       |||||||||||||||||||||| |||||||||||| |||||||| ||||
seq2  CACCTTTTATTCTGATGTTATTGGGGGCTTGAGCTA-CGGCAATT-TGCA  997

seq1  TGGAGTAAAGAGTTTGA  1013
      ||||||||| |||||||
seq2  TGGAGTAAA-AGTTTGA  1013

seq1: chr9_32332865_32333562
seq2: B6Ng01-056K06.g_71_768 (reverse)

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATAAAAGGCGTGTGCCACCACTGCCT  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATAAAAGGCGTGTGCCACCACTACCT  50

seq1  GGCGAGACATAATCTCCTTAATGTTCCAGAAGGCAGTGAGAGTAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGACATAATCTCCTTAATGTTCCAGAAGGCAGTGAGAGTAAAAAAA  100

seq1  GCTCTCCCTGGGCTCATTAGGTGAGGGCCACCGTTTTTCTGACATTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTGGGCTCATTAGGTGAGGGCCACCGTTTTTCTGACATTAACC  150

seq1  ATCCCCAACACCCATCTTCAAGGCAGACTGCTCCTTCTGCTCGATAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAACACCCATCTTCAAGGCAGACTGCTCCTTCTGCTCGATAGGTA  200

seq1  CTTCCTTCATTCTCTGTGCTTAGTGATAGAACCAGAGTTGAAGACAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCATTCTCTGTGCTTAGTGATAGAACCAGAGTTGAAGACAGACA  250

seq1  ATGACAACCTTGCATGGGAACAAGAGAATCAACTCTGCTGCAGACACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACCTTGCATGGGAACAAGAGAATCAACTCTGCTGCAGACACTCA  300

seq1  TCTCTCCAGAAGAGAAAGAAAGGTAAAGCCCGGAGCAGATGGGCCGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGAAGAGAAAGAAAGGTAAAGCCCGGAGCAGATGGGCCGTCAT  350

seq1  GTTAGGTTCCCTGTGAATTGGCCAACATCTTGCCTAAGACATGATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTTCCCTGTGAATTGGCCAACATCTTGCCTAAGACATGATAAAAG  400

seq1  ACCAAAAGGAATTAGGGTTGTGGAGACTCTGAAGAAACAGCCGAAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGGAATTAGGGTTGTGGAGACTCTGAAGAAACAGCCGAAGAGAT  450

seq1  GCCCCTGGTGAATGAGATAAGGCACCTAGAAAGTATCTGGCCAGACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGTGAATGAGATAAGGCACCTAGAAAGTATCTGGCCAGACACAC  500

seq1  GGGAATTTCAAAGCTATTCACACGGGAATGCTGTGGAAAGGTCATGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTCAAAGCTATTCACACGGGAATGCTGTGGAAAGGTCATGGGTT  550

seq1  TTATAGCAAGGATACACTTTATAAAGGCGACATAAACCTGAACACAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCAAGGATACACTTTATAAAGGCGACATAAACCTGAACACAATGG  600

seq1  GTCTAAGTGGTGCAGGTTGGACGGAATATTTCTCTGATGGTCTTTACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGTGGTGCAGGTTGGACGGAATATTTCTCTGATGGTCTTTACTCT  650

seq1  TGTTTGTTTGACATGAATCTCTTTATCAACAGCACAAGCCTGGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGACATGAATCTCTTTATCAACAGCACAAGCCTGGAATTC  698