BAC Information

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BAC

Clone NameB6Ng01-056M20
Chromosome9 (Build37)3 (Build37)
Map Location 59,355,279 - 59,355,40887,798,335 - 87,799,296
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119
Downstream gene4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056M20.bB6Ng01-056M20.g
ACCDH878851DH878852
length349961
definitionDH878851|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M20, 5' end.DH878852|Mus musculus domesticus DNA, BAC clone: B6Ng01-056M20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,355,279 - 59,355,408)(87,798,335 - 87,799,296)
sequence
gaattctacatttgtttcgaaggcaaacaggagaagactgacttccaggc
agctaggaggagggtatcaaagcccatgccccaagcccacagtgacaaac
cttcttcaacaaggccacatctcctaatagtgccactccctgggccaagc
atatacacaccatcacagggggtccccatggagtagccacagtaaacatg
aggatgctaatatcttcatagcaggggatggcgccccctggatgtgtgcc
caggagtgagatagctgagtcatatggtagttctgggggttttttttgtt
ttgttttttttgtttttttgttttttttgggttttttttgttttttttt
gaattcaagccctcaccatcttcttggtcatttgccctcagtaatctgta
ttagcttcctcaatccttgtgcctgtcagcatattggccaacagaggtag
ctgacatttttttcacttccatgaaccaactgttctgtgcttcagtgaac
aaaatgcacgtgggagtggaacgctccttagaatgttccagatcctacag
cttatgggtgacaggactttcaacactgcgtgttgaggaggggacagagg
gtggtactaggaagccagatgagtgcagactctgagccaagcactttgtt
ctgaaagaagcagtaagaggcatgactgtggagggacaaggaggggagat
gaaggacagatgtaggtttgctggtctgtggtgacctgggcaagggtcac
tggaacaggtcatacagtcctgtctgtcctgcctagagatagctctctgg
gcttctcttggcccaactctacgttggagtcattggttctctgctctgtg
ttccctccccagaggatgaggtaattcactctgagccactgagcatcaca
cccagaaagtggtcccttccctttccttagccatagctgagctccaagct
cctcagatagtgaccactgagcactcttcctggggatggagtctctaccc
ttctccacacaagcctagcctgcacggtacagagcctgctccatccaccc
actctgtattcacacttaaaggagcagctcactcagcctttctagaccca
tctgaaggaaagtgagcctccacttcatctcactgctttctcaagtgcct
tctattgtgcaatgtgtttattgcctatgcctattttcttcaggtttccc
taagcgttctctatacatacttcagagaaagcttggcctaaactagaagc
acctccattagcactcgagggattggtgaagcactttccaggcctgtaga
ggtctagccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59355279_59355408
seq2: B6Ng01-056M20.b_145_395

seq1  ACCTACTTCAACAAGGCAACACCTCCTAACAGTGCCACTCCCTGGGGCCA  50
      |||| |||||||||||| ||| ||||||| ||||||||||||| ||||||
seq2  ACCTTCTTCAACAAGGCCACATCTCCTAATAGTGCCACTCCCT-GGGCCA  49

seq1  AACTTATTCAAACCACCAC---------------AGTA--CATGGTACAC  83
      | | ||| || |||| |||               ||||  ||  ||| ||
seq2  AGCATATACACACCATCACAGGGGGTCCCCATGGAGTAGCCACAGTAAAC  99

seq1  TTG----------------CATA--------------------------T  91
       ||                ||||                          |
seq2  ATGAGGATGCTAATATCTTCATAGCAGGGGATGGCGCCCCCTGGATGTGT  149

seq1  GCACAGG-----------TAAGACA--------TTCT--TGGTTTTTTTT  120
      || ||||           | || ||        ||||   ||||||||||
seq2  GCCCAGGAGTGAGATAGCTGAGTCATATGGTAGTTCTGGGGGTTTTTTTT  199

seq1  GTTTTGTTTT----------------------------------------  130
      ||||||||||                                        
seq2  GTTTTGTTTTTTTTGTTTTTTTGTTTTTTTTGGGTTTTTTTTGTTTTTTT  249

seq1  --  130
        
seq2  TT  251

seq1: chr3_87798335_87799296
seq2: B6Ng01-056M20.g_68_1028 (reverse)

seq1  TAGGCTAGACCTCTACAGGCCCTGGAATGTGCTTCACCCATCCCTCGAGT  50
      ||||||||||||||||||| ||||||| |||||||||| |||||||||||
seq2  TAGGCTAGACCTCTACAGG-CCTGGAAAGTGCTTCACCAATCCCTCGAGT  49

seq1  GCTAATGGAGTGCCTTCTAGTTTTAGGCCAAGCTTTCTCTG-AGTATGGT  99
      ||||||||||   ||||||| |||||||||||||||||||| ||||| ||
seq2  GCTAATGGAGGTGCTTCTAG-TTTAGGCCAAGCTTTCTCTGAAGTAT-GT  97

seq1  ATAGAGAACGC-TAGGGAAACCTGAAGAAAATAGGCATAGGCAATAAACA  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAACGCTTAGGGAAACCTGAAGAAAATAGGCATAGGCAATAAACA  147

seq1  CATTGCACAATAGAAAGGCACTTGAG-AAGCAGTGAGATGAAGTGGAGGC  197
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CATTGCACAATAG-AAGGCACTTGAGAAAGCAGTGAGATGAAGTGGAGGC  196

seq1  TCACTTTCCTTCAGATGGGTCTAGAAAGGCTGAGTGAGCTGCTCCTTTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCCTTCAGATGGGTCTAGAAAGGCTGAGTGAGCTGCTCCTTTAA  246

seq1  GTGTGAATACAGAGTGGGTGGATGGAGCAGGCTCTGTACCGTGCAGGCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATACAGAGTGGGTGGATGGAGCAGGCTCTGTACCGTGCAGGCTA  296

seq1  GGCTTGTGTGGAGAAGGGTAGAGACTCCATCCCCAGGAAGAGTGCTCAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGTGGAGAAGGGTAGAGACTCCATCCCCAGGAAGAGTGCTCAGT  346

seq1  GGTCACTATCTGAGGAGCTTGGAGCTCAGCTATGGCTAAGGAAAGGGAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTATCTGAGGAGCTTGGAGCTCAGCTATGGCTAAGGAAAGGGAAG  396

seq1  GGACCACTTTCTGGGTGTGATGCTCAGTGGCTCAGAGTGAATTACCTCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACTTTCTGGGTGTGATGCTCAGTGGCTCAGAGTGAATTACCTCAT  446

seq1  CCTCTGGGGAGGGAACACAGAGCAGAGAACCAATGACTCCAACGTAGAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGGAGGGAACACAGAGCAGAGAACCAATGACTCCAACGTAGAGT  496

seq1  TGGGCCAAGAGAAGCCCAGAGAGCTATCTCTAGGCAGGACAGACAGGACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAAGAGAAGCCCAGAGAGCTATCTCTAGGCAGGACAGACAGGACT  546

seq1  GTATGACCTGTTCCAGTGACCCTTGCCCAGGTCACCACAGACCAGCAAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACCTGTTCCAGTGACCCTTGCCCAGGTCACCACAGACCAGCAAAC  596

seq1  CTACATCTGTCCTTCATCTCCCCTCCTTGTCCCTCCACAGTCATGCCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTGTCCTTCATCTCCCCTCCTTGTCCCTCCACAGTCATGCCTCT  646

seq1  TACTGCTTCTTTCAGAACAAAGTGCTTGGCTCAGAGTCTGCACTCATCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTCTTTCAGAACAAAGTGCTTGGCTCAGAGTCTGCACTCATCTG  696

seq1  GCTTCCTAGTACCACCCTCTGTCCCCTCCTCAACACGCAGTGTTGAAAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAGTACCACCCTCTGTCCCCTCCTCAACACGCAGTGTTGAAAGT  746

seq1  CCTGTCACCCATAAGCTGTAGGATCTGGAACATTCTAAGGAGCGTTCCAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACCCATAAGCTGTAGGATCTGGAACATTCTAAGGAGCGTTCCAC  796

seq1  TCCCACGTGCATTTTGTTCACTGAAGCACAGAACAGTTGGTTCATGGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACGTGCATTTTGTTCACTGAAGCACAGAACAGTTGGTTCATGGAAG  846

seq1  TGAAAAAAATGTCAGCTACCTCTGTTGGCCAATATGCTGACAGGCACAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAATGTCAGCTACCTCTGTTGGCCAATATGCTGACAGGCACAAG  896

seq1  GATTGAGGAAGCTAATACAGATTACTGAGGGCAAATGACCAAGAAGATGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGGAAGCTAATACAGATTACTGAGGGCAAATGACCAAGAAGATGG  946

seq1  TGAGGGCTTGAATTC  962
      |||||||||||||||
seq2  TGAGGGCTTGAATTC  961