BAC Information

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BAC

Clone NameB6Ng01-056N14
Chromosome9 (Build37)
Map Location 47,177,401 - 47,315,535
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056N14.bB6Ng01-056N14.g
ACCDH878886DH878887
length1,164928
definitionDH878886|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N14, 5' end.DH878887|Mus musculus domesticus DNA, BAC clone: B6Ng01-056N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,314,358 - 47,315,535)(47,177,401 - 47,178,259)
sequence
gaattcagttctggggagagaggcaggtggatccctagggcctctcagag
tcactaaattccagggaaaagtgagagacccctgtgtcaacaaacaagct
agagtgactgaggaagatagcttgagattgtccactggcctccacacacc
catgcacacacgtgcacatgcacgtgcatttgcgcgcgcgcgcgcacaca
cacacacacacacacacacacacacacacacacacgaaataaattaacac
actcgcttaaaagaaccgtctgactcagcggcctgcattcagacaaagca
aaacggcagagttttcgatcagctggagaaacatatccgggtgagggccc
tgattaagtgatctacccaaggtcacgcagctgatgtcagagcgtcctgc
ttctgagccgagagctggccaagtggagctcaactcagccacagacaggc
aatgtctgttccttcatcagaaacaaactaccttcgggccagatggctag
agttataaaattaatattaatttttttcctccaaaaaagctctttcagaa
tggaaaactgagtggtgcagtggaaagctctgtccaagagacaggaagta
cgcataggatgggatgctgtcaaggacaacctggcaaggggccctcagga
aggttcatggacttcaaaccaaattattactgtgatttcaatcagcagat
gggagtctgcaaacgataacatttacaaggtaatctctattctaagtaat
tgctatttcccaggagccagttgatgggagaaggcacagccactgctcag
aggaggctcctgcctctgagcatctttcctgccttcaattagcttttggc
ttaatgaatgcatatgtacttgagtttactccattcttcaacgtgtttgt
gctcatgaaaacacacagggctcctccaaaggtcccagcacagtcatctg
taggattctaattatcataggtataatttcacactggctctaccaatagt
acagacaaaacagtgccagccagtgtgtccctgtatcaagacaagttgaa
actccatacattatgtttggatcacagtagaagggaaatcatagattata
gcgagggtgcaagggaataaaatggatgggtagcggggttccatacctgt
atttccagacaaga
gaattctgtaacccagagttcaaagggttgaagtgatcagttaattcaaa
cactattctgcgggtttacatgtgagctctctagaggttaggtctcttgt
aagtaggcttagaagctggcaggaggggtaagaatagagtggtgagaagg
cggcacattggggagcctgggcaaatctcaaacccttctaaactcttacc
ttgtggtaagagtcatgtctgtttccaatttaaaagtttggagagagaga
aaagaaaaaaaaagttttctttggacattttgattggaggaactgagagc
tgcagaaatatgacccaacaacatcagcgaacttttttgttagtgcctta
ggatttaaaacatatccccccacacacctatggtcacttgatctttggca
aaggagctaaaatcatccagtggaaaaaagacagcatttccaacaaatgg
tgatggctcaactagtggttagcatgtagaagaatgagaattgatccatt
cttatctccttgtacaaagttcaagcctaagtagatcaaagacctccaca
taaaaccagagacactaaaattaatagcggagaaagtgggggaaaacctc
aaagatatgggcacaggggaaattttttctgaacagaacagcaatggctt
tgtgctgtaagatcaagaatcgacaaatgggacctcataaaattgcaaag
cttctgtaaggcaaaggacacttgtcaataagacaaaaaggccaccaaca
gattgggaaaagatcttttaccaatcctaaatcagataggggactaatat
ccattatatataaagaactcaagaaaattggattccagaaactcaataac
tctataaaaaaaaatggtgtatagagctaaacaagaattcttcactgagg
ataccaaatgacagagaagcacctgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_47314358_47315535
seq2: B6Ng01-056N14.b_49_1212 (reverse)

seq1  TCTTGGCTCTGAAAATACAGTGTAATGAACCCCCGCTAACACATCATTTT  50
      |||||  |||| |||||||| || ||| | ||||||| || ||||  |||
seq2  TCTTG--TCTGGAAATACAG-GT-ATGGAACCCCGCT-ACCCATCCATTT  45

seq1  TATTCCACTGCA-CCTCGCTAATATCTAATGATTTCACCTTCTACTGTGA  99
      ||||||  |||| ||||||||  |||| |||||||| |||||||||||||
seq2  TATTCCCTTGCACCCTCGCTATAATCT-ATGATTTC-CCTTCTACTGTGA  93

seq1  T-CAAACATAATTGTATGGGAGTTTCAACTTTGTTCTTTGATACAGGGAC  148
      | ||||||||| ||||| ||||||||||| ||||   |||||||||||||
seq2  TCCAAACATAA-TGTAT-GGAGTTTCAAC-TTGT--CTTGATACAGGGAC  138

seq1  ACCACTGGCTGGCACTGTTTTGTTCTGTACTATTGGTAGAGCCAGTGTGA  198
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  A-CACTGGCTGGCACTGTTTTG-TCTGTACTATTGGTAGAGCCAGTGTGA  186

seq1  AATTTATACCTATGATAATTAGAATCCTACAGATGACCTGTGCTGGGACC  248
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AA-TTATACCTATGATAATTAGAATCCTACAGATGA-CTGTGCTGGGACC  234

seq1  TTTGGAGGAGCCCTGTGTGTTTTCATGAGCACAAACACGTTGAAGAATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGAGCCCTGTGTGTTTTCATGAGCACAAACACGTTGAAGAATGG  284

seq1  AGTAAACTCAAGTACATATGCATTCATTAAGCCAAAAGCTAATTGAAGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTCAAGTACATATGCATTCATTAAGCCAAAAGCTAATTGAAGGC  334

seq1  AGGAAAGATGCTCAGAGGCAGGAGCCTCCTCTGAGCAGTGGCTGTGCCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATGCTCAGAGGCAGGAGCCTCCTCTGAGCAGTGGCTGTGCCTT  384

seq1  CTCCCATCAACTGGCTCCTGGGAAATAGCAATTACTTAGAATAGAGATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCAACTGGCTCCTGGGAAATAGCAATTACTTAGAATAGAGATTA  434

seq1  CCTTGTAAATGTTATCGTTTGCAGACTCCCATCTGCTGATTGAAATCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAATGTTATCGTTTGCAGACTCCCATCTGCTGATTGAAATCACA  484

seq1  GTAATAATTTGGTTTGAAGTCCATGAACCTTCCTGAGGGCCCCTTGCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATTTGGTTTGAAGTCCATGAACCTTCCTGAGGGCCCCTTGCCAG  534

seq1  GTTGTCCTTGACAGCATCCCATCCTATGCGTACTTCCTGTCTCTTGGACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCTTGACAGCATCCCATCCTATGCGTACTTCCTGTCTCTTGGACA  584

seq1  GAGCTTTCCACTGCACCACTCAGTTTTCCATTCTGAAAGAGCTTTTTTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCCACTGCACCACTCAGTTTTCCATTCTGAAAGAGCTTTTTTGG  634

seq1  AGGAAAAAAATTAATATTAATTTTATAACTCTAGCCATCTGGCCCGAAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAATTAATATTAATTTTATAACTCTAGCCATCTGGCCCGAAGG  684

seq1  TAGTTTGTTTCTGATGAAGGAACAGACATTGCCTGTCTGTGGCTGAGTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTTTCTGATGAAGGAACAGACATTGCCTGTCTGTGGCTGAGTTG  734

seq1  AGCTCCACTTGGCCAGCTCTCGGCTCAGAAGCAGGACGCTCTGACATCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACTTGGCCAGCTCTCGGCTCAGAAGCAGGACGCTCTGACATCAG  784

seq1  CTGCGTGACCTTGGGTAGATCACTTAATCAGGGCCCTCACCCGGATATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGACCTTGGGTAGATCACTTAATCAGGGCCCTCACCCGGATATGT  834

seq1  TTCTCCAGCTGATCGAAAACTCTGCCGTTTTGCTTTGTCTGAATGCAGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCTGATCGAAAACTCTGCCGTTTTGCTTTGTCTGAATGCAGGC  884

seq1  CGCTGAGTCAGACGGTTCTTTTAAGCGAGTGTGTTAATTTATTTCGTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGAGTCAGACGGTTCTTTTAAGCGAGTGTGTTAATTTATTTCGTGTG  934

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCA  984

seq1  AATGCACGTGCATGTGCACGTGTGTGCATGGGTGTGTGGAGGCCAGTGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACGTGCATGTGCACGTGTGTGCATGGGTGTGTGGAGGCCAGTGGA  1034

seq1  CAATCTCAAGCTATCTTCCTCAGTCACTCTAGCTTGTTTGTTGACACAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCAAGCTATCTTCCTCAGTCACTCTAGCTTGTTTGTTGACACAGG  1084

seq1  GGTCTCTCACTTTTCCCTGGAATTTAGTGACTCTGAGAGGCCCTAGGGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCACTTTTCCCTGGAATTTAGTGACTCTGAGAGGCCCTAGGGAT  1134

seq1  CCACCTGCCTCTCTCCCCAGAACTGAATTC  1178
      ||||||||||||||||||||||||||||||
seq2  CCACCTGCCTCTCTCCCCAGAACTGAATTC  1164

seq1: chr9_47177401_47178259
seq2: B6Ng01-056N14.g_73_936

seq1  GAATTCTGTAACCCAGAGTTCAAAGGGTTGAAGTGATCAGTTAATTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACCCAGAGTTCAAAGGGTTGAAGTGATCAGTTAATTCAAA  50

seq1  CACTA-GCTGCGGGTTTACATGTGAGCTCTCTAGAGGTTAGGTCTCTTGT  99
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTCTGCGGGTTTACATGTGAGCTCTCTAGAGGTTAGGTCTCTTGT  100

seq1  AAGTAGGCTTAGAAGCTGGCAGGAGGGGTAAGAATAGAGTGGTGAGAAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGCTTAGAAGCTGGCAGGAGGGGTAAGAATAGAGTGGTGAGAAGG  150

seq1  CGGCACATTGGGGAGCCTGGGCAAATCTCAAACCCTTCTAAACTCTTACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACATTGGGGAGCCTGGGCAAATCTCAAACCCTTCTAAACTCTTACC  200

seq1  TTGTGGTAAGAGTCATGTCTGTTTCCAATTTAAAAGTTTGGAGAGAGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTAAGAGTCATGTCTGTTTCCAATTTAAAAGTTTGGAGAGAGAGA  250

seq1  AAAGAAAAAAAAAGTTTTCTTTGGACATTTTGATTGGAGGAACTGAGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAAAGTTTTCTTTGGACATTTTGATTGGAGGAACTGAGAGC  300

seq1  TGCAGAAATATGACCCAACAACATCAGCGAACTTTTTTGTTAGTGCCTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATATGACCCAACAACATCAGCGAACTTTTTTGTTAGTGCCTTA  350

seq1  GGATTTAAAACATATCCCCCCACACACCTATGGTCACTTGATCTTTGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAAACATATCCCCCCACACACCTATGGTCACTTGATCTTTGGCA  400

seq1  AAGGAGCTAAAATCATCCAGTGGAAAAAAGACAGCATTTCCAACAAATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTAAAATCATCCAGTGGAAAAAAGACAGCATTTCCAACAAATGG  450

seq1  TGATGGCTCAACTAGTGGTTAGCATGTAGAAGAATGAGAATTGATCCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTCAACTAGTGGTTAGCATGTAGAAGAATGAGAATTGATCCATT  500

seq1  CTTATCTCCTTGTACAAAGTTCAAGCCTAAGTAGATCAAAGACCTCCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCCTTGTACAAAGTTCAAGCCTAAGTAGATCAAAGACCTCCACA  550

seq1  TAAAACCAGAGACACTAAAATTAATAGCGGAGAAAGTGGGGGAAAACCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAGAGACACTAAAATTAATAGCGGAGAAAGTGGGGGAAAACCTC  600

seq1  AAAGATATGGGCACAGGGGAAA-TTTTTCTGAACAGAACAGCAATGGC-T  647
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  AAAGATATGGGCACAGGGGAAATTTTTTCTGAACAGAACAGCAATGGCTT  650

seq1  TGTGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTGCAAAG  700

seq1  CTTCTGTAAGGCAAAGGACAC-TGTCAATAAGACAAAAAGGCCACCAACA  746
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTCTGTAAGGCAAAGGACACTTGTCAATAAGACAAAAAGGCCACCAACA  750

seq1  GATTGGGAAAAGATC-TTTACCAATCCTAAATCAGATAGGGGACTAATAT  795
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATTGGGAAAAGATCTTTTACCAATCCTAAATCAGATAGGGGACTAATAT  800

seq1  CCAATATATATAAAGAACTCAAG-AAATTGGATTCCAGAAAACCAAATAA  844
      ||| ||||||||||||||||||| |||||||||||||| ||||  |||||
seq2  CCATTATATATAAAGAACTCAAGAAAATTGGATTCCAG-AAACTCAATAA  849

seq1  CTCTATTAAAAAAAA  859
      |||||| ||||||||
seq2  CTCTATAAAAAAAAA  864