BAC Information

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BAC

Clone NameB6Ng01-057H01
Chromosome9 (Build37)
Map Location 23,323,414 - 23,324,399
singlet/doubletsinglet
Overlap genenone
Upstream geneBbs9, Bmper
Downstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057H01.bB6Ng01-057H01.g
ACCDH879307DH879308
length1,262976
definitionDH879307|Mus musculus domesticus DNA, BAC clone: B6Ng01-057H01, 5' end.DH879308|Mus musculus domesticus DNA, BAC clone: B6Ng01-057H01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattactttttatacatttaaatagcctgagataaacatataaa
gagaaatttgcacccccatgtttattgaagtattgttcccaacagccgtg
aggcacaatcaatatattagtggattaaaaaaacccaggatacgaacaca
tgatagaatactgttcaatcatagaggataataaaaatcctgtcattcgt
gttaagacagatgaacatagtaagcagcatggcattaagtgaaataatct
agacacatgacgacaaacatcatatgatgtcactcagttgtataatataa
aaacagggacatagaagtagaaaatagcataaaattaaatagtaagtctg
gatagaagagggaaggagatgcaacagtcaattcataaaagttatagtta
gacgggagagatgttctgctgttgtagtcagtagggtgactttgggcttc
acgtattgttttacatatttcagagtagctatgaaaatgtatcttgtgat
tccccagatgaaaagaatcattaagatagatacaattatgaaagaattag
atttataattgccatctaaggtaaatagttctacaatggctgtctgcaat
ctaaagagaagggaaaactgatatgctctctccaagaggctgtgagcata
agaagagaggacaatcatgcagaactagattaaggccaaaaaaaaaaaaa
aaaaaaacccaagtgtcactaaagcagccttttttcaaagaagaaagaat
ctaacgtcttgtgtttcaggcagaagcaagaaaatgacctccaagaagga
tccaggatgtggccaagtttcctcttacttctgctccaattcagcctgga
cctagatggtgctgcacacattgcactcagtttcctgactcactgtccaa
tcaatatttggggacaaatccagaagtgtgctttatcacttgtcagatgt
ccttcagtccaatcaaactgacactcaaaataagcatcaaagaaggagtc
tgaatgtacagtcaatagacaatgtttggaatgatggatctactaaacat
tggtgacttgatcattatcaatgcagacatgttcacaaaacactcaactt
tattttattaatgttcaataaattaacattaatttgagtgatgaaattta
agttgagatacagggaaacagctccttatagagagcctaagatctttgga
atacgtactctatgatcttccatactttccttctatgcgagaaagattaa
gcagaaatgata
gaattcaaagatttgctgatggaaatgtcctggcaccaggcaggaaagcc
tcagacatgacttcatagtggttaagtcatttaaatatttgaccagatga
attaatttatgaaacaatttaacaaaaggacaaatgatatttgacagaag
ttatgcagtgtgcatgcaagtacaatagactctcactggtgcaaagacag
tttaaaggataccaagctacagtttgcaattcttctattatcattcctgc
acagagagttatacacagattaagccaaaggatgtaagaattttaaaaag
tgtgtaccatttcttttctgacctcatttagattttagtagttgcatgaa
tttgggcaagaagcttaattttgtgtgtttctctgataaagggaattaaa
gccatcaaatttcactaggatggtgggttaagaatttatgcaaatcactt
agaagaacagtcagcatgatagttctcaatagtttagaagtgtttactat
tgtagaccttgagtgtatatgtggacattggtgatttgttagtttttgct
acttatggtaatttagacaaacgagtgttctgaatgctgtacttcccatg
tgtgacctaagtctttaggatcaggagagaatctccaaggtttcctggag
agaaggaagatagggtctaaagcttatgatccttttatttttctacccgg
tgctgggctatttccatgattcagcaaagatctggattcacagaactgtc
aaaggccaagtagaaagctagaaatgtacaggggagggaggctttgatac
accaaatcaaatcctcagctaggctgtgaccttaacttcttaaagcctca
aaggaacagcatagttctaatatcccaaggattcccttcacctcggggaa
gaatttttaacagttctttttaaatgtgagatttctggtcaaaaagctag
atttctgtggatatgtagtttggctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_23323414_23324399
seq2: B6Ng01-057H01.g_67_1042

seq1  GAATTCAAAGATTTGCTGATGGAAATGTCCTGGCACCAGGCAGGAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATTTGCTGATGGAAATGTCCTGGCACCAGGCAGGAAAGCC  50

seq1  TCAGACATGACTTCATAGTGGTTAAGTCATTTAAATATTTGACCAGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATGACTTCATAGTGGTTAAGTCATTTAAATATTTGACCAGATGA  100

seq1  ATTAATTTATGAAACAATTTAACAAAAGGACAAATGATATTTGACAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTATGAAACAATTTAACAAAAGGACAAATGATATTTGACAGAAG  150

seq1  TTATGCAGTGTGCATGCAAGTACAATAGACTCTCACTGGTGCAAAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGTGTGCATGCAAGTACAATAGACTCTCACTGGTGCAAAGACAG  200

seq1  TTTAAAGGATACCAAGCTACAGTTTGCAATTCTTCTATTATCATTCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGATACCAAGCTACAGTTTGCAATTCTTCTATTATCATTCCTGC  250

seq1  ACAGAGAGTTATACACAGATTAAGCCAAAGGATGTAAGAATTTTAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGTTATACACAGATTAAGCCAAAGGATGTAAGAATTTTAAAAAG  300

seq1  TGTGTACCATTTCTTTTCTGACCTCATTTAGATTTTAGTAGTTGCATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACCATTTCTTTTCTGACCTCATTTAGATTTTAGTAGTTGCATGAA  350

seq1  TTTGGGCAAGAAGCTTAATTTTGTGTGTTTCTCTGATAAAGGGAATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCAAGAAGCTTAATTTTGTGTGTTTCTCTGATAAAGGGAATTAAA  400

seq1  GCCATCAAATTTCACTAGGATGGTGGGTTAAGAATTTATGCAAATCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAAATTTCACTAGGATGGTGGGTTAAGAATTTATGCAAATCACTT  450

seq1  AGAAGAACAGTCAGCATGATAGTTCTCAATAGTTTAGAAGTGTTTACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACAGTCAGCATGATAGTTCTCAATAGTTTAGAAGTGTTTACTAT  500

seq1  TGTAGACCTTGAGTGTATATGTGGACATTGGTGATTTGTTAGTTTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCTTGAGTGTATATGTGGACATTGGTGATTTGTTAGTTTTTGCT  550

seq1  ACTTATGGTAATTTAGACAAACGAGTGTTCTGAATGCTGTACTTCCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGGTAATTTAGACAAACGAGTGTTCTGAATGCTGTACTTCCCATG  600

seq1  TGTGACCTAAGTCTTTAGGATCAGGAGAGAATCTCCAAGGTTTCCTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTAAGTCTTTAGGATCAGGAGAGAATCTCCAAGGTTTCCTGGAG  650

seq1  AGAAGGAAGATAGGGTCTAAAGCTTATGATCCTTTTATTTTTCTACCCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAGATAGGGTCTAAAGCTTATGATCCTTTTATTTTTCTACCCGG  700

seq1  TGCTGGGCTATTTCCATGATTCAGCAAAGATCTGGATTCACAGAACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCTATTTCCATGATTCAGCAAAGATCTGGATTCACAGAACTGTC  750

seq1  AAAGGCCAAGTAGAAAGCTAGAAATGTACAGGGGAGGGAGGCTTTGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAAGTAGAAAGCTAGAAATGTACAGGGGAGGGAGGCTTTGATAC  800

seq1  ACCAAATCAAATCCTCAGCTAAGGCTGTGACCTTAACTTCTTAAAGCCTC  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCAAATCAAATCCTCAGCT-AGGCTGTGACCTTAACTTCTTAAAGCCTC  849

seq1  AAAGGAACAGCATAGTTCTAAAATATCCCAAGGATTCCCTTCACCTCGGG  900
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  AAAGGAACAGCATAGTTCT--AATATCCCAAGGATTCCCTTCACCTCGGG  897

seq1  GAAGAATTTTTTAACAGTTCTTTTTAAATGTGAGAATTTCTGGTTCAAAA  950
      |||||| ||||||||||||||||||||||||||| |||||||| ||||||
seq2  GAAGAA-TTTTTAACAGTTCTTTTTAAATGTGAG-ATTTCTGG-TCAAAA  944

seq1  AAGGCCTAGATTTCTGTGGGTATGTAGGTTTGGCTT  986
      |    |||||||||||||| |||||| |||||||||
seq2  A---GCTAGATTTCTGTGGATATGTA-GTTTGGCTT  976