BAC Information

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BAC

Clone NameB6Ng01-058I05
Chromosome9 (Build37)
Map Location 121,287,738 - 121,425,074
singlet/doubletdoublet
Overlap geneTrak1, Cck
Upstream geneMyrip, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
Downstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058I05.bB6Ng01-058I05.g
ACCDH880069DH880070
length1,041954
definitionDH880069|Mus musculus domesticus DNA, BAC clone: B6Ng01-058I05, 5' end.DH880070|Mus musculus domesticus DNA, BAC clone: B6Ng01-058I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,287,738 - 121,288,780)(121,424,116 - 121,425,074)
sequence
gaattctaaatgtcaactgtgagcaaagcccttgttctacattactagca
ttgccaggattacgtatagataagggttgatagtggggtaggtgacaagc
agacaggtgatagatatacgttgactgactagtagatgacagacagacag
ataataaatatagatagacgatgaacaaatagacaatggatagatagagg
gatggatggacagataaaaaggttggcaactcaaaggatgatggcacagg
cctttaattccagcccccaggaggcagaggcagaggcagaggcagaggca
gaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcaga
ggcagaggcagaggcaggaggatctctgtgagttcaaggaacttgagcta
catatcaaactccaacccatccagggtaagaccctgtctcaaaacaaaca
aacatggacacagaccagctgacagctttgttgggagatgtgctctgtcc
tagcctgtcctgggaatcgttgctgcagactgttggtagtcttgtctggg
cagcagcgtgagagtcctttctccctcaggcctcggccttaggactctgg
gctctgtgggtggtcttgtccttgactgtgtggtgtgctttctgtcaggt
gatttcacactgcaacccagcccagaaagtcaagcaggaggaccggacac
gttgcacagtcttacaaaatgtcttgtgcttttccaaaccacttagcaag
ggcttccacgtttctgagcctgtttctttgtttcatgaggcttgcctgac
ctaagtgtccctggcctccaaggcacctcccctcagtgagcattcttctc
agtgagacagggtggtacacttactgtgtagaacttaacgcccttctgcc
tcggtttcccaagagcgggagctccagatggtcaccaccatatcagctac
caaagccattaaaaattatgacattgcttcccaaggccactcctaacttc
tacatatcaaaccaaaacacatgaaaaggaatgtcatcagg
gaattcttcgttcaccagcctgtacggacaaggcaggacagaccttggag
aagtcagtgggaatctggtctaaacaagatgcacaatattagaagtgatt
gaaccattgagaatgtgggtctgcatccaggtacagctggatctgggttt
tgagggatgctgtctccctcctgcctcttcccatccacggtcctctgtaa
tgtccactctcactttttgtgttagagagattgatgacaaaagtctctat
tcccctcccctcagggttgacataagaaattttagacaagaactctgatt
ggctctgctctggttatgggctgaccgaccacccagctccttgtaaccag
gggaatgggatgttatgaatggataaaaccaagttctggtcctccctgtg
gtggagccaatcactaaggggaagtggatggggtggacacactccagtca
cacggatcgcttttcccagattgaaatagaatcttctaacaaaaggagac
caaggtgggggagagatagctcagtcaggaaagtgtggagacccgaattc
aaatcccagccagaaccctcgtaagaagaagaaaatgaagcaccagacac
ctgcttatgatcccacactgggaaggtagacacaggtggatgccggggac
tccaggtcctgacacacacacacacacacacacacacacacacacacaca
cacacgcagacacattttaaaaaggagaagaacagaatgcatgctgggaa
gctttacagagtccattaaagcagagaagacaaagcaactccaaccagcc
aggctgctatctgaagaaaggcagttttgctgtcacggggagggtcacag
ggctagccttcccttcactggtggctttactcctctgtttaggtcactga
ccagcctctggtgcactatcgttgttgggcagcaaaagaaaaggctaaag
gttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121287738_121288780
seq2: B6Ng01-058I05.b_47_1087

seq1  GAATTCTAAATGTCAACTGTGAGCAAAGCCCTTGTTCTACATTACTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATGTCAACTGTGAGCAAAGCCCTTGTTCTACATTACTAGCA  50

seq1  TTGCCAGGATTACGTATAGATAAGGGTTGATAGTGGGGTAGGTGACAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGATTACGTATAGATAAGGGTTGATAGTGGGGTAGGTGACAAGC  100

seq1  AGACAGGTGATAGATATACGTTGACTGACTAGTAGATGACAGACAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTGATAGATATACGTTGACTGACTAGTAGATGACAGACAGACAG  150

seq1  ATAATAAATATAGATAGACGATGAACAAATAGACAATGGATAGATAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATATAGATAGACGATGAACAAATAGACAATGGATAGATAGAGG  200

seq1  GATGGATGGACAGATAAAAAGGTTGGCAACTCAAAGGATGATGGCACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGGACAGATAAAAAGGTTGGCAACTCAAAGGATGATGGCACAGG  250

seq1  CCTTTAATTCCAGCCCCCAGGAGGCAGAGGCAGAGGCAGAGGCAGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTCCAGCCCCCAGGAGGCAGAGGCAGAGGCAGAGGCAGAGGCA  300

seq1  GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGA  350

seq1  GGCAGAGGCAGAGGCAGGAGGATCTCTGTGAGTTCAAGGAACTTGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGAGGCAGGAGGATCTCTGTGAGTTCAAGGAACTTGAGCTA  400

seq1  CATATCAAACTCCAACCCATCCAGGGTAAGACCCTGTCTCAAAACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAACTCCAACCCATCCAGGGTAAGACCCTGTCTCAAAACAAACA  450

seq1  AACATGGACACAGACCAGCTGACAGCTTTGTTGGGAGATGTGCTCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGACACAGACCAGCTGACAGCTTTGTTGGGAGATGTGCTCTGTCC  500

seq1  TAGCCTGTCCTGGGAATCGTTGCTGCAGACTGTTGGTAGTCTTGTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGTCCTGGGAATCGTTGCTGCAGACTGTTGGTAGTCTTGTCTGGG  550

seq1  CAGCAGCGTGAGAGTCCTTTCTCCCTCAGGCCTCGGCCTTAGGACTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCGTGAGAGTCCTTTCTCCCTCAGGCCTCGGCCTTAGGACTCTGG  600

seq1  GCTCTGTGGGTGGTCTTGTCCTTGACTGTGTGGTGTGCTTTCTGTCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGGGTGGTCTTGTCCTTGACTGTGTGGTGTGCTTTCTGTCAGGT  650

seq1  GATTTCACACTGCAACCCAGCCCAGAAAGTCAAGCAGGAGGACCGGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACACTGCAACCCAGCCCAGAAAGTCAAGCAGGAGGACCGGACAC  700

seq1  GTTGCACAGTCTTACAAAATGTCTTGTGCTTTTCCAAACCACTTAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTGCACAGTCTTACAAAATGTCTTGTGCTTTTCCAAACCACTTAGC-AA  749

seq1  GGGCTTCCACGTTTCTGAGCCTGTTTCTTTGTTTCATGAGGCTTGCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCCACGTTTCTGAGCCTGTTTCTTTGTTTCATGAGGCTTGCCTGA  799

seq1  CCTAAGTGTCCCTGGCCTCCAAGGCACCTCCCCTCAGTGAGCATTCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTGTCCCTGGCCTCCAAGGCACCTCCCCTCAGTGAGCATTCTTCT  849

seq1  CAGTGAGACAGGGTGGTACACTTACTGTGTAGAACTTAACGGCCTTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGTGAGACAGGGTGGTACACTTACTGTGTAGAACTTAACGCCCTTCTGC  899

seq1  CTCGGTTTCCCAAGAGCGGGAGCTCCAGATGGTCACCACCATATCCAGCT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCGGTTTCCCAAGAGCGGGAGCTCCAGATGGTCACCACCATAT-CAGCT  948

seq1  ACCAAAGCCATTAAAAATTATTACAGTGCTTCCCAAGGCCACTCCTAAC-  999
      ||||||||||||||||||||| ||| ||||||||||||||||||||||| 
seq2  ACCAAAGCCATTAAAAATTATGACATTGCTTCCCAAGGCCACTCCTAACT  998

seq1  TCTACATAATCAAACCAAAACACATGAAAGGAAATGTCATCAGG  1043
      ||||||| ||||||||||||||||||||| | ||||||||||||
seq2  TCTACAT-ATCAAACCAAAACACATGAAAAGGAATGTCATCAGG  1041

seq1: chr9_121424116_121425074
seq2: B6Ng01-058I05.g_67_1020 (reverse)

seq1  CAGCCTTTAGGCCTTTTCTTCTGCTGCCCAAACACGATAGTGCACCAGAA  50
      || |||||| |||||||||| ||||||||||  |||||||||||||||| 
seq2  CAACCTTTA-GCCTTTTCTTTTGCTGCCCAACAACGATAGTGCACCAGAG  49

seq1  GCTGGTCAGTGACCTACAGCAGGGGAGTAAAAGCCACCAGTTGAGGGAAG  100
      |||||||||||||||| | ||| ||||| ||||||||||||  |||||||
seq2  GCTGGTCAGTGACCTA-AACAGAGGAGT-AAAGCCACCAGTGAAGGGAAG  97

seq1  GCTAGCCCTGTGACCCTCCCCGTGACAGCAAAACTGCCTTTTCTTCAGAT  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTAGCCCTGTGACCCTCCCCGTGACAGCAAAACTGCC-TTTCTTCAGAT  146

seq1  AGCAGCCTGGCTGGTTGGAGTTGCTTTGTCTTCTCTGCTTTAATGGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTGGCTGGTTGGAGTTGCTTTGTCTTCTCTGCTTTAATGGACTC  196

seq1  TGTAAAGCTTCCCAGCATGCATTCTGTTCTTCTCCTTTTTAAAATTGTGT  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTAAAGCTTCCCAGCATGCATTCTGTTCTTCTCCTTTTTAAAA-TGTGT  245

seq1  CTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCA  295

seq1  GGACCTGGAGTCCCCGGCATCCACCTGTGTCTACCTTCCCAGTGTGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGAGTCCCCGGCATCCACCTGTGTCTACCTTCCCAGTGTGGGAT  345

seq1  CATAAGCAGGTGTCTGGTGCTTCATTTTCTTCTTCTTACGAGGGTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCAGGTGTCTGGTGCTTCATTTTCTTCTTCTTACGAGGGTTCTGG  395

seq1  CTGGGATTTGAATTCGGGTCTCCACACTTTCCTGACTGAGCTATCTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTGAATTCGGGTCTCCACACTTTCCTGACTGAGCTATCTCTCC  445

seq1  CCCACCTTGGTCTCCTTTTGTTAGAAGATTCTATTTCAATCTGGGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTGGTCTCCTTTTGTTAGAAGATTCTATTTCAATCTGGGAAAAG  495

seq1  CGATCCGTGTGACTGGAGTGTGTCCACCCCATCCACTTCCCCTTAGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCGTGTGACTGGAGTGTGTCCACCCCATCCACTTCCCCTTAGTGAT  545

seq1  TGGCTCCACCACAGGGAGGACCAGAACTTGGTTTTATCCATTCATAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCACCACAGGGAGGACCAGAACTTGGTTTTATCCATTCATAACAT  595

seq1  CCCATTCCCCTGGTTACAAGGAGCTGGGTGGTCGGTCAGCCCATAACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCCCTGGTTACAAGGAGCTGGGTGGTCGGTCAGCCCATAACCAG  645

seq1  AGCAGAGCCAATCAGAGTTCTTGTCTAAAATTTCTTATGTCAACCCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCCAATCAGAGTTCTTGTCTAAAATTTCTTATGTCAACCCTGAG  695

seq1  GGGAGGGGAATAGAGACTTTTGTCATCAATCTCTCTAACACAAAAAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGAATAGAGACTTTTGTCATCAATCTCTCTAACACAAAAAGTGA  745

seq1  GAGTGGACATTACAGAGGACCGTGGATGGGAAGAGGCAGGAGGGAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGACATTACAGAGGACCGTGGATGGGAAGAGGCAGGAGGGAGACAG  795

seq1  CATCCCTCAAAACCCAGATCCAGCTGTACCTGGATGCAGACCCACATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCAAAACCCAGATCCAGCTGTACCTGGATGCAGACCCACATTCT  845

seq1  CAATGGTTCAATCACTTCTAATATTGTGCATCTTGTTTAGACCAGATTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTTCAATCACTTCTAATATTGTGCATCTTGTTTAGACCAGATTCC  895

seq1  CACTGACTTCTCCAAGGTCTGTCCTGCCTTGTCCGTACAGGCTGGTGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTTCTCCAAGGTCTGTCCTGCCTTGTCCGTACAGGCTGGTGAAC  945

seq1  GAAGAATTC  959
      |||||||||
seq2  GAAGAATTC  954