BAC Information

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BAC

Clone NameB6Ng01-058K09
Chromosome9 (Build37)
Map Location 81,714,801 - 81,866,485
singlet/doubletdoublet
Overlap gene4930486G11Rik
Upstream geneEG666534, LOC100039038, Htr1b, LOC671392
Downstream geneLOC100039085, Irak1bp1, Phip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058K09.bB6Ng01-058K09.g
ACCDH880169DH880170
length7341,066
definitionDH880169|Mus musculus domesticus DNA, BAC clone: B6Ng01-058K09, 5' end.DH880170|Mus musculus domesticus DNA, BAC clone: B6Ng01-058K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,714,801 - 81,715,533)(81,865,393 - 81,866,485)
sequence
gaattcattcattttgtgcaaagcagtttttgtttgttttcaggtttgtt
gttgttgtcttgttttttacttaaattgtaaaagagcatcagtttaaagt
agtatactaaagtatatagtattagcaatactcatgtgtctataactacc
aaagagacataaaatagaatttcattgagttcaagagttgattacaagtg
tagttttgcttctgttggctggtaggcattggtgtatatagcataatatg
acctaaaaatgtctatggttaaagtaaaccccttttttataagcaaaatg
ttaaatgaaatgtttatctgtatgtgagtttatgtgtgtaagaccagtga
ttttgaataccagaagagggtattagatcttcttgtcatggaattacata
tagatgtttgggaggtactctgtgtgggtgctgggaactgatttgggtcc
tccggaaaattagaacacactcttaactactggaacatctcactcgtcca
taaaagtcataagcacttcccatgcatgtttcttcttcttgatgcaggct
gtactttctggagggtagtgtaggtatgtctaggaacagtaatgtagcat
gaagtcacactcaggtcactaaaatctaaaccaccatattattaaggagt
gactttgacccagagaattggttaataaaaaaactataagatataagatg
agaacagtaattttaagaatagtgtgtgtgtgtg
gaattcctatagattaaaatttagatgaacatgcgcttataatacaagct
atacaaataaagttgaaaataagctatcatctaaaaacaataataaaaat
gacaaatggtttccaaagacatgagtgatttccaaaggcattagtgagat
atcaagtatagggcaaaaataattaggaataaaatcaccaagagtactag
aacaacaaaaaaacaattgtgaatgagaaataaatgattaaaaatttaaa
ctaaaccactgagataaatatcagattaaaggacaggtagtaaactagaa
aaaataaggcaaggaaatcaggcatataaggaaaactatgtgtgaagtat
ggagagacattaagggtcatggcagaatcagaaggtagagtgtgaagatc
cattgctcagtgatagagtacatagcaacctggcctagaatgtacacgtc
tagggatttgttctctgataaataaagaaaggcagcagcaaggaggacaa
gaggataaagaaaacataaattgccaaaggacaatttattgaacaataaa
gatcacagacataagaactgtgatatatgttaaaagaaaatgttaataag
accgacaacatagttattcacttcaatgttctaccaccaccatgatgcct
taacaaagtattattaacttataattttgtatatccaacagaattagtct
ttaaaaaggagaaatgcaatacaatccagatatgcaataaggtagtaagg
ttaaatattacacatcaatatatgaaataggaatcagttatcagtgatgg
aatcataacaaaggcacctcgtaaggcatgtctgacaaaggtcaggacca
gccagattctcattttcttatgtgtatgacctctcaggaccagccagatt
ctcgttttcttatgtgtatgagctcagcatgtctgccattcaggaatttt
ctgtcctatccttagagatgctacttatcaaagttcaagcactctcagta
gataaatctacattaagtttaccgagattctctaatcacaggatgaaaaa
gactagcttattgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_81714801_81715533
seq2: B6Ng01-058K09.b_47_780

seq1  GAATTCATTCATTTTGTGCAAAGCAGTTTTTGTTTGTTTTCAGGTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTTTGTGCAAAGCAGTTTTTGTTTGTTTTCAGGTTTGTT  50

seq1  GTTGTTGTCTTGTTTTTTACTTAAATTGTAAAAGAGCATCAGTTTAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTCTTGTTTTTTACTTAAATTGTAAAAGAGCATCAGTTTAAAGT  100

seq1  AGTATACTAAAGTATATAGTATTAGCAATACTCATGTGTCTATAACTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTAAAGTATATAGTATTAGCAATACTCATGTGTCTATAACTACC  150

seq1  AAAGAGACATAAAATAGAATTTCATTGAGTTCAAGAGTTGATTACAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACATAAAATAGAATTTCATTGAGTTCAAGAGTTGATTACAAGTG  200

seq1  TAGTTTTGCTTCTGTTGGCTGGTAGGCATTGGTGTATATAGCATAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGCTTCTGTTGGCTGGTAGGCATTGGTGTATATAGCATAATATG  250

seq1  ACCTAAAAATGTCTATGGTTAAAGTAAACCCCTTTTTTATAAGCAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAAATGTCTATGGTTAAAGTAAACCCCTTTTTTATAAGCAAAATG  300

seq1  TTAAATGAAATGTTTATCTGTATGTGAGTTTATGTGTGTAAGACCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAAATGTTTATCTGTATGTGAGTTTATGTGTGTAAGACCAGTGA  350

seq1  TTTTGAATACCAGAAGAGGGTATTAGATCTTCTTGTCATGGAATTACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATACCAGAAGAGGGTATTAGATCTTCTTGTCATGGAATTACATA  400

seq1  TAGATGTTTGGGAGGTACTCTGTGTGGGTGCTGGGAACTGATTTGGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTTGGGAGGTACTCTGTGTGGGTGCTGGGAACTGATTTGGGTCC  450

seq1  TCCGGAAAATTAGAACACACTCTTAACTACTGGAACATCTCACTCGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAAAATTAGAACACACTCTTAACTACTGGAACATCTCACTCGTCCA  500

seq1  TAAAAGTCATAAGCACTTCCCATGCATGTTTCTTCTTCTTGATGCAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCATAAGCACTTCCCATGCATGTTTCTTCTTCTTGATGCAGGCT  550

seq1  GTACTTTCTGGAGGGTAGTGTAGGTATGTCTAGGAACAGTAATGTAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCTGGAGGGTAGTGTAGGTATGTCTAGGAACAGTAATGTAGCAT  600

seq1  GAAGTCACACTCAGGTCACTAAAATCTAAACCACCATATTATTAAGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACACTCAGGTCACTAAAATCTAAACCACCATATTATTAAGGAGT  650

seq1  GACTTTGACCCAGAGAATTGGTTAATAAAAAAACTATAAGATATAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGACCCAGAGAATTGGTTAATAAAAAAACTATAAGATATAAGATG  700

seq1  AGAACAGTAA-TTTAAGAATAGTGTGTGTGTGTG  733
      |||||||||| |||||||||||||||||||||||
seq2  AGAACAGTAATTTTAAGAATAGTGTGTGTGTGTG  734

seq1: chr9_81865393_81866485
seq2: B6Ng01-058K09.g_70_1135 (reverse)

seq1  AGACAATAAAGCTAGTCTTTTTTTCAATACTTTGTGGATTTAGAGAAATC  50
      ||||||| ||||||||||||||    || || ||     |||||| ||||
seq2  AGACAAT-AAGCTAGTCTTTTT---CATCCTGTG----ATTAGAG-AATC  41

seq1  TCGGGTAAACTTAAATGTTAGAATTTATCCTACCTGAGAGTGGCTTGAAA  100
      || ||||||||| |||| ||| |||||| ||| |||||||| ||||||| 
seq2  TC-GGTAAACTT-AATG-TAG-ATTTAT-CTA-CTGAGAGT-GCTTGAA-  83

seq1  CCTTTTGAATTATGTAGCCTTCTCTAAGGATAGGGACAGAAAAATTCCCT  150
         |||||  || |||| | |||||||||||| ||||||||||  | |||
seq2  --CTTTGA--TAAGTAG-CATCTCTAAGGATA-GGACAGAAAA--TTCCT  125

seq1  GAATGGCAGAACATGCTTGAGCTCATACACATAAGAAAACGAGAATCTGG  200
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  GAATGGCAG-ACATGC-TGAGCTCATACACATAAGAAAACGAGAATCTGG  173

seq1  CTGGTCCTGAGAGGTCATACACATAAGAAAATGAGAATCTGGCTGGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTGAGAGGTCATACACATAAGAAAATGAGAATCTGGCTGGTCCT  223

seq1  GACCTTTGTCAGACATGCCTTACGAGGTGCCTTTGTTATGATTCCATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGTCAGACATGCCTTACGAGGTGCCTTTGTTATGATTCCATCAC  273

seq1  TGATAACTGATTCCTATTTCATATATTGATGTGTAATATTTAACCTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTGATTCCTATTTCATATATTGATGTGTAATATTTAACCTTACT  323

seq1  ACCTTATTGCATATCTGGATTGTATTGCATTTCTCCTTTTTAAAGACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTGCATATCTGGATTGTATTGCATTTCTCCTTTTTAAAGACTAA  373

seq1  TTCTGTTGGATATACAAAATTATAAGTTAATAATACTTTGTTAAGGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGGATATACAAAATTATAAGTTAATAATACTTTGTTAAGGCATC  423

seq1  ATGGTGGTGGTAGAACATTGAAGTGAATAACTATGTTGTCGGTCTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTGGTAGAACATTGAAGTGAATAACTATGTTGTCGGTCTTATTA  473

seq1  ACATTTTCTTTTAACATATATCACAGTTCTTATGTCTGTGATCTTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTTTTAACATATATCACAGTTCTTATGTCTGTGATCTTTATTG  523

seq1  TTCAATAAATTGTCCTTTGGCAATTTATGTTTTCTTTATCCTCTTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAATTGTCCTTTGGCAATTTATGTTTTCTTTATCCTCTTGTCCT  573

seq1  CCTTGCTGCTGCCTTTCTTTATTTATCAGAGAACAAATCCCTAGACGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGCTGCCTTTCTTTATTTATCAGAGAACAAATCCCTAGACGTGT  623

seq1  ACATTCTAGGCCAGGTTGCTATGTACTCTATCACTGAGCAATGGATCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTAGGCCAGGTTGCTATGTACTCTATCACTGAGCAATGGATCTTC  673

seq1  ACACTCTACCTTCTGATTCTGCCATGACCCTTAATGTCTCTCCATACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTACCTTCTGATTCTGCCATGACCCTTAATGTCTCTCCATACTTC  723

seq1  ACACATAGTTTTCCTTATATGCCTGATTTCCTTGCCTTATTTTTTCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGTTTTCCTTATATGCCTGATTTCCTTGCCTTATTTTTTCTAGT  773

seq1  TTACTACCTGTCCTTTAATCTGATATTTATCTCAGTGGTTTAGTTTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACCTGTCCTTTAATCTGATATTTATCTCAGTGGTTTAGTTTAAAT  823

seq1  TTTTAATCATTTATTTCTCATTCACAATTGTTTTTTTGTTGTTCTAGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCATTTATTTCTCATTCACAATTGTTTTTTTGTTGTTCTAGTAC  873

seq1  TCTTGGTGATTTTATTCCTAATTATTTTTGCCCTATACTTGATATCTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTGATTTTATTCCTAATTATTTTTGCCCTATACTTGATATCTCAC  923

seq1  TAATGCCTTTGGAAATCACTCATGTCTTTGGAAACCATTTGTCATTTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTTTGGAAATCACTCATGTCTTTGGAAACCATTTGTCATTTTTA  973

seq1  TTATTGTTTTTAGATGATAGCTTATTTTCAACTTTATTTGTATAGCTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTTTAGATGATAGCTTATTTTCAACTTTATTTGTATAGCTTGT  1023

seq1  ATTATAAGCGCATGTTCATCTAAATTTTAATCTATAGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGCGCATGTTCATCTAAATTTTAATCTATAGGAATTC  1066