BAC Information

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BAC

Clone NameB6Ng01-058L20
Chromosome9 (Build37)
Map Location 78,950,996 - 79,118,776
singlet/doubletdoublet
Overlap genenone
Upstream geneFbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058L20.bB6Ng01-058L20.g
ACCDH880235DH880236
length1,1611,000
definitionDH880235|Mus musculus domesticus DNA, BAC clone: B6Ng01-058L20, 5' end.DH880236|Mus musculus domesticus DNA, BAC clone: B6Ng01-058L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,117,593 - 79,118,776)(78,950,996 - 78,951,956)
sequence
gaattcaggttagaatttctttccttttggcaatttctgttatactatga
gcctttcttttgctgaattaatcttaggttatgggataaaaaagtttcta
ttatggctattacagagtttaaggagtgttggtggctgtctgcctatatc
aagctgtagacgtttttatagcaactataaatattaggtttttttagtgc
caacaaataaaatccaggatgtcctctcactatatttccctgttctttct
aaaattttgcctgcattttttcaaaggcttatcatggtaactgacaggct
ctatctttagccttgtctaaaattccttccattatctcttaccacaattt
ccaaagatgagacgccttaacacctactaaggcctgagcacattccttgg
ctactaggcacagagagcaagagtcagactggctatttctccatggatac
tggatgcttcttgatgattgacagttctctggctctgcctgctctgcact
ccttggtcagaagccaggtttggcaagtcaaaggagtcccttggcaaacc
agtctgcacaggactgaagaggacatcaaacagtgtagtcccaagcgtct
gaactaatcccctggtgctgagactgagacaagtgtagaatcaaagcatg
tgagctccatatagaaaacatgtttttcagcttaataaagcaaacagcag
gacacaacagctaaagcaaggttcctacagctgggcaggatttctttttt
ggctttatcctaagaaaaccattgcccaaaataagatccctattctgtag
tgagtcaaactcaattgcactcttggtcctcgagtttgaccagtttcaaa
aatcagagctggaaagaaaggatgaaggaaaccaagagctcactcaaata
aagactggaacagtcatgcttctccggctgctttgctgacccagcttctc
catcacgaagctggcttgactcggaggggtccgtttacaatgaggtgaat
gaagagtggcagtctggtctcacttacttaatggagtagacataaatggc
ctcccagttactggaatgtaaccacatacaccgatgtaggtcagcatcca
tggtgcgggtccggtatgggacttatggctggataggagaaacgcatttg
agtcaagcggc
gaattcatattatctttccccacgatgtagcaaaggtagaaatcaaaatg
aaaaatctggaaccataaaaccacagtaaaagaaacaagttactttctta
ctgttcctgattgaatcaaggcgttgagaaaaatgagctatctccccaac
tctctttttattttgagacccaggccagcaatttgaacttgctaggtagc
ccaattgtatcttgaagttctgttcttccacatcagccactgacatatct
gggattgcaggcttgtgacatgagaccctaaaaacattttagtttttaac
aacaacaacaacaacaacaacaacaacaacaacaacaacaaccaaggaag
aaattgagatgtcagaggccattcatcagtggcaattctaatctttccac
agagtgttcaaaaaaatgaatgtttcgatctgctcatctgttttaggcaa
ttgcaaaagagatttcacacctttgaatttctcttcaggagacaagttct
taacaacttgttctttgcatcttttgccacctgaataggccaaggagttt
ctgtattgtcacattcaccttcccctttcctgtggggttcttccctcagt
ctacctgtttcttatagttttattggttgtagaaaaaagatcctggaccc
atccattaaatgtttgccttgtccataactgtaaaagaggagtcatgtga
tatttactactcagtacaatataggtccctttccttcagctctggagcag
tgttctttattcatatttctactacagatggaatacttaggcttatggga
tggtacagtgtttatctgccacaccctatgttttccttctgtttccagcc
aggtctttaaccaagtcaccatgtgttcacagagaactgtctttctcacg
ttcctggcattttcctagcccgtgtctattcctcatcttcagagctactc
tgcatgtttgagtatttgtatagcagtacctctgcatcatcacaaaatct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79117593_79118776
seq2: B6Ng01-058L20.b_47_1207 (reverse)

seq1  GCCGCTTTGACTCAAAAAAATCGCG-TCCTCCATATCCAGCCATTAAGTC  49
      ||||| ||||||||||      ||| | |||| |||||||||| ||||||
seq2  GCCGC-TTGACTCAAA-----TGCGTTTCTCC-TATCCAGCCA-TAAGTC  42

seq1  ACTATACTGGACACGCACCACTGGAATGCTGTGACCTACATACGGTGTAT  99
       | |||| |||| ||||||| ||| ||||  |||||||||| ||||||||
seq2  -CCATACCGGACCCGCACCA-TGG-ATGC--TGACCTACAT-CGGTGTAT  86

seq1  GTGGTTTACATTTTCAGTAACTGGGAGGCAATTTAATTGTCTGACTCAAT  149
      |||| ||||| || ||||||||||||||| |||||  ||||| |||| ||
seq2  GTGG-TTACA-TTCCAGTAACTGGGAGGCCATTTA--TGTCT-ACTCCAT  131

seq1  TACAGTAAGTGAGAACCAGACTGCCAACTCTTCATTCACCTCATTGTAAA  199
      || |||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TA-AGTAAGTGAG-ACCAGACTGCC-ACTCTTCATTCACCTCATTGTAAA  178

seq1  CGGACCCCTCCGAGTCAAGCCAGCTTCGTGATGGAGAAGCTGGGTCAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACCCCTCCGAGTCAAGCCAGCTTCGTGATGGAGAAGCTGGGTCAGCA  228

seq1  AAGCAGCCGGGGAAGCATGACTGTTCCAGTCTTTATTTTGAGTGAGCTCT  299
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  AAGCAGCCGGAGAAGCATGACTGTTCCAGTCTTTA-TTTGAGTGAGCTCT  277

seq1  TGGTTTCCTTCATCCTTTCTTTCCAGCTCTGGTTTTTTGAAACTGGTCAA  349
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  TGGTTTCCTTCATCCTTTCTTTCCAGCTCT-GATTTTTGAAACTGGTCAA  326

seq1  ACTCGAGGACCAAGAGTGCAATTGAGTTTGACTCACTACAGAATAGGGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGGACCAAGAGTGCAATTGAGTTTGACTCACTACAGAATAGGGAT  376

seq1  CTTATTTTGGGCAATGGTTTTCTTAGGATAAAGCCAAAAAAGAAATCCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTGGGCAATGGTTTTCTTAGGATAAAGCCAAAAAAGAAATCCTG  426

seq1  CCCAGCTGTAGGAACCTTGCTTTAGCTGTTGTGTCCTGCTGTTTGCTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGTAGGAACCTTGCTTTAGCTGTTGTGTCCTGCTGTTTGCTTTA  476

seq1  TTAAGCTGAAAAACATGTTTTCTATATGGAGCTCACATGCTTTGATTCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGAAAAACATGTTTTCTATATGGAGCTCACATGCTTTGATTCTA  526

seq1  CACTTGTCTCAGTCTCAGCACCAGGGGATTAGTTCAGACGCTTGGGACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTCTCAGTCTCAGCACCAGGGGATTAGTTCAGACGCTTGGGACTA  576

seq1  CACTGTTTGATGTCCTCTTCAGTCCTGTGCAGACTGGTTTGCCAAGGGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTGATGTCCTCTTCAGTCCTGTGCAGACTGGTTTGCCAAGGGAC  626

seq1  TCCTTTGACTTGCCAAACCTGGCTTCTGACCAAGGAGTGCAGAGCAGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGACTTGCCAAACCTGGCTTCTGACCAAGGAGTGCAGAGCAGGCA  676

seq1  GAGCCAGAGAACTGTCAATCATCAAGAAGCATCCAGTATCCATGGAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGAGAACTGTCAATCATCAAGAAGCATCCAGTATCCATGGAGAAA  726

seq1  TAGCCAGTCTGACTCTTGCTCTCTGTGCCTAGTAGCCAAGGAATGTGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTCTGACTCTTGCTCTCTGTGCCTAGTAGCCAAGGAATGTGCTC  776

seq1  AGGCCTTAGTAGGTGTTAAGGCGTCTCATCTTTGGAAATTGTGGTAAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTAGTAGGTGTTAAGGCGTCTCATCTTTGGAAATTGTGGTAAGAG  826

seq1  ATAATGGAAGGAATTTTAGACAAGGCTAAAGATAGAGCCTGTCAGTTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAAGGAATTTTAGACAAGGCTAAAGATAGAGCCTGTCAGTTACC  876

seq1  ATGATAAGCCTTTGAAAAAATGCAGGCAAAATTTTAGAAAGAACAGGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAGCCTTTGAAAAAATGCAGGCAAAATTTTAGAAAGAACAGGGAA  926

seq1  ATATAGTGAGAGGACATCCTGGATTTTATTTGTTGGCACTAAAAAAACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGAGAGGACATCCTGGATTTTATTTGTTGGCACTAAAAAAACCT  976

seq1  AATATTTATAGTTGCTATAAAAACGTCTACAGCTTGATATAGGCAGACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATAGTTGCTATAAAAACGTCTACAGCTTGATATAGGCAGACAG  1026

seq1  CCACCAACACTCCTTAAACTCTGTAATAGCCATAATAGAAACTTTTTTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACACTCCTTAAACTCTGTAATAGCCATAATAGAAACTTTTTTAT  1076

seq1  CCCATAACCTAAGATTAATTCAGCAAAAGAAAGGCTCATAGTATAACAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAACCTAAGATTAATTCAGCAAAAGAAAGGCTCATAGTATAACAGA  1126

seq1  AATTGCCAAAAGGAAAGAAATTCTAACCTGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  AATTGCCAAAAGGAAAGAAATTCTAACCTGAATTC  1161

seq1: chr9_78950996_78951956
seq2: B6Ng01-058L20.g_69_1029

seq1  GAATTCATATTATCTTTCCCCACGATGTAGCAAAGGTAGAAATCAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTATCTTTCCCCACGATGTAGCAAAGGTAGAAATCAAAATG  50

seq1  AAAAATCTGGAACCATAAAACCACAGTAAAAGAAACAAGTTACTTTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGGAACCATAAAACCACAGTAAAAGAAACAAGTTACTTTCTTA  100

seq1  CTGTTCCTGATTGAATCAAGGCGTTGAGAAAAATGAGCTATCTCCCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTGATTGAATCAAGGCGTTGAGAAAAATGAGCTATCTCCCCAAC  150

seq1  TCTCTTTTTATTTTGAGACCCAGGCCAGCAATTTGAACTTGCTAGGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTATTTTGAGACCCAGGCCAGCAATTTGAACTTGCTAGGTAGC  200

seq1  CCAATTGTATCTTGAAGTTCTGTTCTTCCACATCAGCCACTGACATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGTATCTTGAAGTTCTGTTCTTCCACATCAGCCACTGACATATCT  250

seq1  GGGATTGCAGGCTTGTGACATGAGACCCTAAAAACATTTTAGTTTTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCAGGCTTGTGACATGAGACCCTAAAAACATTTTAGTTTTTAAC  300

seq1  AACAACAACAACAACAACAACAACAACAACAACAACAACAACCAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAACAACAACAACAACAACAACAACAACAACCAAGGAAG  350

seq1  AAATTGAGATGTCAGAGGCCATTCATCAGTGGCAATTCTAATCTTTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGATGTCAGAGGCCATTCATCAGTGGCAATTCTAATCTTTCCAC  400

seq1  AGAGTGTTCAAAAAAATGAATGTTTCGATCTGCTCATCTGTTTTAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTCAAAAAAATGAATGTTTCGATCTGCTCATCTGTTTTAGGCAA  450

seq1  TTGCAAAAGAGATTTCACACCTTTGAATTTCTCTTCAGGAGACAAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAGAGATTTCACACCTTTGAATTTCTCTTCAGGAGACAAGTTCT  500

seq1  TAACAACTTGTTCTTTGCATCTTTTGCCACCTGAATAGGCCAAGGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTTGTTCTTTGCATCTTTTGCCACCTGAATAGGCCAAGGAGTTT  550

seq1  CTGTATTGTCACATTCACCTTCCCCTTTCCTGTGGGGTTCTTCCCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGTCACATTCACCTTCCCCTTTCCTGTGGGGTTCTTCCCTCAGT  600

seq1  CTACCTGTTTCTTATAGTTTTATTGGTTGTAGAAAAAAGATCCTGGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTTTCTTATAGTTTTATTGGTTGTAGAAAAAAGATCCTGGACCC  650

seq1  ATCCATTAAATGTTTGCCTTGTCCATAACTGTAAAAGAGGAGTCATGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTAAATGTTTGCCTTGTCCATAACTGTAAAAGAGGAGTCATGTGA  700

seq1  TATTTACTACTCAGTACAATATAGGTCCC-TTCCTTCAGCTCTGGAGCAG  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATTTACTACTCAGTACAATATAGGTCCCTTTCCTTCAGCTCTGGAGCAG  750

seq1  TGTTCTTTATTCATATTTCTACTACAGATGGAATACTTAGGCTTATGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTATTCATATTTCTACTACAGATGGAATACTTAGGCTTATGGGA  800

seq1  TGGTACAGTGTTTATCTGCCACACCCTATGTTTTCCTTCTGTTTCCCAGC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGTACAGTGTTTATCTGCCACACCCTATGTTTTCCTTCTGTTT-CCAGC  849

seq1  CAGGTCTTTAACCAAGTCACCATGTGTTCACAGAGAACTGTCTTTCTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTAACCAAGTCACCATGTGTTCACAGAGAACTGTCTTTCTCAC  899

seq1  GTTCCTGGCATTTTCCTAGCCCGTGTCTATTCCTCATCTTCAGAGCTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGCATTTTCCTAGCCCGTGTCTATTCCTCATCTTCAGAGCTACT  949

seq1  CTGCATGTTTGA  961
      ||||||||||||
seq2  CTGCATGTTTGA  961