BAC Information

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BAC

Clone NameB6Ng01-059K22
Chromosome9 (Build37)
Map Location 77,125,886 - 77,255,563
singlet/doubletdoublet
Overlap gene2310046A06Rik, 5730403I07Rik
Upstream geneHcrtr2, C530008M07Rik, Tinag, LOC436082
Downstream geneLrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059K22.bB6Ng01-059K22.g
ACCDH880887DH880888
length950524
definitionDH880887|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K22, 5' end.DH880888|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,254,603 - 77,255,563)(77,125,886 - 77,126,391)
sequence
gaattctttcattttcaccgtaagcaaggcaaggattaacttcatcatat
cattgggtttctttctgtgaaggttactgaattttcgtggcgtttcttct
gcatctgttgagatgaccctgccagaatctatgattactggaacatcaca
ttaccaccagcatgtccaactttacttgtgacactggaccttctgcgctc
ctctgaacaaattcagtccaaccacattgtcatttctgtccttctcttca
ttcatgtcactgataactcatcgagggctcttgttctcatgttcgtacat
ggcgggaaattagcttgcttatagtattcatgtctagtctgggcattcca
gccatagccagctcataaaacgaatgggggcgtacttcctggtttctttt
ttgaagtggcataggtgtggaattatctcccccttaagtacacaggagag
cttgcttctgacctatctggatctcgcctttctttatgggaagactgtaa
atactgatttattttataggcagagtgtacatcattaaatattcctagcg
tgggagtttgtaaggagggtgacccgacccagctggccaccattgccttg
ctggtctctgccctctaataacatcaagtgaaatacgtgaggctacagcg
acccccagtggcctctgagaggcatctcttaaagggactgaaatcagggt
gctccatcctagcccggggaagcaaaggcacagatcctcttacctcatat
ctatagaaagcctgccatctcctcctgcggtgaaggctttggttaaagaa
agagacaaataggagctgcgaggatgcttggtgatggatggactagggat
atgaggacacagagattatgaagtcccgggaatcactgcagtgtctcttc
tggcaccagctactagatgaggtacatccaagaaaggggaactgcatgct

gaattcttttctctccttacttacacaaatatgaagagattcccagctat
tcatacatgctcatgtcctacccagccaccctactcaaagacactgagaa
caatcaaatcactctgggatgcattcacaggggattagagaaatcttcct
ctgcccatctcattttgcttccagctaggtaatgtgaccctgatggcaaa
gcaatgcctcccataaaagctgcaggaacattcagtaccatttgttattc
caacagccaatgctgctctgtcccacaatcaacacagccgatgctcttct
cggtactgtgcagaattcttagtcttaaagggaagcagccagagcaaaac
cgatgatgagactcctaagtcaaatcctaagcttcacctgaagaataaaa
gattatctggaataccaggtaccttctaccaagaaaaggagaagtagaag
gaaaggaaaggaaagaaaaggaaaaggagaagggagaggaggagtggagg
gagggataaacattcatgatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_77254603_77255563
seq2: B6Ng01-059K22.b_43_990 (reverse)

seq1  CATGCAAGTGCCCCTTTCCTGGGATGCTCCCTCATCTAGAAGCTGAGTGC  50
      ||||| ||| ||||||| || ||||| | |||||||||| ||||| ||||
seq2  CATGC-AGTTCCCCTTT-CTTGGATG-TACCTCATCTAGTAGCTG-GTGC  46

seq1  CAGAATGAGACACAGCAGTGAGTCCCAGGACCATCATAATCTCTGTGTCC  100
      ||||| ||||||| ||||||| |||| ||| | |||||||||||||||||
seq2  CAGAA-GAGACACTGCAGTGATTCCCGGGA-CTTCATAATCTCTGTGTCC  94

seq1  TCATATTCCTTAGTCCATCCATCTACCAAGCATTCCTCTGCAGCTCCTAC  150
      ||||| ||| ||||||||||||| |||||||| ||||| |||||||||| 
seq2  TCATA-TCCCTAGTCCATCCATC-ACCAAGCA-TCCTC-GCAGCTCCTAT  140

seq1  TTGTCTCTTTCTCTAACCAAAGCCTTCACCGCAGTGAGGAGATGGCAGGC  200
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TTGTCTCTTTCTTTAACCAAAGCCTTCACCGCAG-GAGGAGATGGCAGGC  189

seq1  TTTCTATAGTTATGAGGTAAGAGGAATTGTGCCTTTGCTTCCCCGGGCTA  250
      ||||||||| |||||||||||||||  |||||||||||||||||||||||
seq2  TTTCTATAGATATGAGGTAAGAGGATCTGTGCCTTTGCTTCCCCGGGCTA  239

seq1  GGATGGAGCACCCTGATTGTCAGTCCCTTTAAGAGATGCCTTTCAGAGGC  300
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GGATGGAGCACCCTGATT-TCAGTCCCTTTAAGAGATGCCTCTCAGAGGC  288

seq1  CACTGGGGGTCGCTGTAGCCTCTGCGTATTTCACTTGATGTTACTAGAGG  350
      ||||||||||||||||||||||  ||||||||||||||||||| ||||||
seq2  CACTGGGGGTCGCTGTAGCCTC-ACGTATTTCACTTGATGTTATTAGAGG  337

seq1  GCAGAGACCAGCAAGGCAATGGTGGCCAGCTGGGTCGGGTCACCCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACCAGCAAGGCAATGGTGGCCAGCTGGGTCGGGTCACCCTCCTT  387

seq1  ACAAACTCCCACGCTAGGAATATCTAATGATGTACACTCTGCCTATAAAC  450
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  ACAAACTCCCACGCTAGGAATATTTAATGATGTACACTCTGCCTATAAAA  437

seq1  TAAATCAGTATTTACAGTCTTCCCATAAAGAAAGGCGAGATCCAGATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAATCAGTATTTACAGTCTTCCCATAAAGAAAGGCGAGATCCAGATAGG  487

seq1  TTAGAAGCAAGCTCTCCTGTGTACTTAAGGGCGAGATAATTCCACACCTA  550
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCAGAAGCAAGCTCTCCTGTGTACTTAAGGGGGAGATAATTCCACACCTA  537

seq1  TGCCACTTCAAAAAAGAAACCAGGAAGTACGCCCCCATTCGTTTTATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTTCAAAAAAGAAACCAGGAAGTACGCCCCCATTCGTTTTATGAG  587

seq1  CTGGCTATGGCTGGAATGCCCAGACTAGACATGAATACTATAAGCAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATGGCTGGAATGCCCAGACTAGACATGAATACTATAAGCAAGCT  637

seq1  AATTTCCCGCCACGTACGAACATGAGAACAAGAGCCCTCGATGAGTTATC  700
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCGCCATGTACGAACATGAGAACAAGAGCCCTCGATGAGTTATC  687

seq1  AGTGACATGAATGAAGAGAAGGACAGAAATGACAATGTGGTTGGACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACATGAATGAAGAGAAGGACAGAAATGACAATGTGGTTGGACTGAA  737

seq1  TTTGTTCAGAGGAGCGCAGAAGGTCCAGTGTCACAAGTAAAGTTGGACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAGAGGAGCGCAGAAGGTCCAGTGTCACAAGTAAAGTTGGACAT  787

seq1  GCTGGTGGTAATGTGATGTTCCAGTAATCATAGATTCTGGCAGGGTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGTAATGTGATGTTCCAGTAATCATAGATTCTGGCAGGGTCATC  837

seq1  TCAACAGATGCAGAAGAAACGCCACGAAAATTCAGTAACCTTCACAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGATGCAGAAGAAACGCCACGAAAATTCAGTAACCTTCACAGAAA  887

seq1  GAAACCCAATGATATGATGAAGTTAATCCTTGCCTTGCTTACGGTGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAATGATATGATGAAGTTAATCCTTGCCTTGCTTACGGTGAAAA  937

seq1  TGAAAGAATTC  961
      |||||||||||
seq2  TGAAAGAATTC  948

seq1: chr9_77125886_77126391
seq2: B6Ng01-059K22.g_68_573

seq1  GAATTCTTTTCTCTCCTTACTTACACAAATATAAAGAGATTCCCAGCTAT  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCTTTTCTCTCCTTACTTACACAAATATGAAGAGATTCCCAGCTAT  50

seq1  TCATACATGCTCATGTCCTACCCAGCCACCCTACTCAAAGACACTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGCTCATGTCCTACCCAGCCACCCTACTCAAAGACACTGAGAA  100

seq1  CAATCAAATCACTCTGGGATGCATTCACAGGGGATTAGAGAAATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAATCACTCTGGGATGCATTCACAGGGGATTAGAGAAATCTTCCT  150

seq1  CTGCCCATCTCATTTTGCTTCCAGCTAGGTAATGTGACCCTGATGGCAGA  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGCCCATCTCATTTTGCTTCCAGCTAGGTAATGTGACCCTGATGGCAAA  200

seq1  GCAATGCCTCCCATAAAAGCTGCAGGAACATTCAGTACCATTTATTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAATGCCTCCCATAAAAGCTGCAGGAACATTCAGTACCATTTGTTATTC  250

seq1  CAACAGCCAATGCTGCTCTGTCCCACAATCAACACAGCCGATGCTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCAATGCTGCTCTGTCCCACAATCAACACAGCCGATGCTCTTCT  300

seq1  CGGTACTGTGCAGAATTCTTAGTCTTAAAGGGAAGCAGCCAGAGCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACTGTGCAGAATTCTTAGTCTTAAAGGGAAGCAGCCAGAGCAAAAC  350

seq1  CGATGATGAGACTCCTAAGTCAAATCCTAAGCTTCACCTGAAGAATAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGATGATGAGACTCCTAAGTCAAATCCTAAGCTTCACCTGAAGAATAAAA  400

seq1  GATTATCTGGAATACCAGGTACCTTCTACCAAGAAAAGGAGAAGTAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTGGAATACCAGGTACCTTCTACCAAGAAAAGGAGAAGTAGAAG  450

seq1  GAAAGGAAAGGAAAGAAAAGGAAAAGGAGAAGGGAGAGGAGGAGTGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAGGAAAGAAAAGGAAAAGGAGAAGGGAGAGGAGGAGTGGAGG  500

seq1  GAGGGA  506
      ||||||
seq2  GAGGGA  506