BAC Information

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BAC

Clone NameB6Ng01-059L18
Chromosome9 (Build37)10 (Build37)
Map Location 109,675,763 - 109,676,0148,727,148 - 8,727,386
singlet/doubletsingletsinglet
Overlap gene1700124P09Rik
Upstream geneIhpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109
Downstream geneSpink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059L18.bB6Ng01-059L18.g
ACCDH880921DH880922
length252332
definitionDH880921|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L18, 5' end.DH880922|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,675,763 - 109,676,014)(8,727,148 - 8,727,386)
sequence
taaagatgtacaggttacccaagatatcgcctgcctgaaatcagagcagt
ggcacctggtcagtgaggaaaagttaagtatggaggaagcagtgttatct
gctcagagatacaccactgtgtcttcaagtcctgtaacaagactgaaagc
tgtgaccagcctgcctcacagagtgtctacactgatccatggaataagat
tctctagacctggggggatgactcagtaagtaactatggggggagagaga
ga
actatatataccaggccgacctcaaactcacagggatccatctgcctctg
tagaattcacggcattcgtcaccatgctctgctactttttttttttttaa
gatttgtttatttatttcatgtatgtgagtacactgtacactgttgctag
ctttggacacaccagaagaagtaagtcattgtatcccattacagatggtt
gtgagccaccatgcaccatgtgggtgctgggaattgaactcaggacctct
ggaagagcagtcattgctctgaaccactgagccttctctccagcctgtgc
tacttttttttttttttttgagacagtctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109675763_109676014
seq2: B6Ng01-059L18.b_54_305

seq1  TAAAGATGTACAGGTTACCCAAGATATCGCCTGCCTGAAATCAGAGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGTACAGGTTACCCAAGATATCGCCTGCCTGAAATCAGAGCAGT  50

seq1  GGCACCTGGTCAGTGAGGAAAAGTTAAGTATGGAGGAAGCAGTGTTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGGTCAGTGAGGAAAAGTTAAGTATGGAGGAAGCAGTGTTATCT  100

seq1  GCTCAGAGATACACCACTGTGTCTTCAAGTCCTGTAACAAGACTGAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGATACACCACTGTGTCTTCAAGTCCTGTAACAAGACTGAAAGC  150

seq1  TGTGACCAGCCTGCCTCACAGAGTGTCTACACTGATCCATGGAATAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCAGCCTGCCTCACAGAGTGTCTACACTGATCCATGGAATAAGAT  200

seq1  TCTCTAGACCTGGGGGGATGACTCAGTAAGTAACTATGGGGGGAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGACCTGGGGGGATGACTCAGTAAGTAACTATGGGGGGAGAGAGA  250

seq1  GA  252
      ||
seq2  GA  252

seq1: chr10_8727148_8727386
seq2: B6Ng01-059L18.g_158_370

seq1  TACTTTTTTTTTTGAGACACAAGTGTGTGTGTGTGGCACATGTGTGAATT  50
      |||||||||||                                     ||
seq2  TACTTTTTTTT-------------------------------------TT  13

seq1  CTTAAAATGTTTTAAAAAAAATATTTATTTTATTTA--TGAGCACATTGG  98
       |||| || | ||        ||||||||| || ||  |||| ||| || 
seq2  TTTAAGATTTGTT--------TATTTATTTCATGTATGTGAGTACACTGT  55

seq1  A-------GCTGTCTTCAGACACACCAGGAG----AGGGCATCAGATTCC  137
      |       |||  |||  |||||||||| ||    | | |||   || ||
seq2  ACACTGTTGCTAGCTTTGGACACACCAGAAGAAGTAAGTCATTGTATCCC  105

seq1  ATTACAGATGGTTGTGAGCCACCATGC-------GGTTGCTGGGATTTGA  180
      |||||||||||||||||||||||||||       || |||||||| ||||
seq2  ATTACAGATGGTTGTGAGCCACCATGCACCATGTGGGTGCTGGGAATTGA  155

seq1  ACTCAGGACCTCTGGAAGAACAGTCAAGTGCTCTTAACCACTGAGCCATC  230
      ||||||||||||||||||| ||||| | |||||| |||||||||||| ||
seq2  ACTCAGGACCTCTGGAAGAGCAGTC-ATTGCTCTGAACCACTGAGCCTTC  204

seq1  TCTCCAGCC  239
      |||||||||
seq2  TCTCCAGCC  213