BAC Information

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BAC

Clone NameB6Ng01-060G08
Chromosome9 (Build37)
Map Location 40,578,767 - 40,696,706
singlet/doubletdoublet
Overlap gene9030425E11Rik, Hspa8, Bsx
Upstream geneOlfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, LOC100043076, LOC100043071
Downstream gene4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464, EG667566, 6720432D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060G08.bB6Ng01-060G08.g
ACCDH881378DH881379
length985704
definitionDH881378|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G08, 5' end.DH881379|Mus musculus domesticus DNA, BAC clone: B6Ng01-060G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,695,807 - 40,696,706)(40,578,767 - 40,579,470)
sequence
gaattcactgaatgtaagtatatgctaaagttctttgggctctttacata
cttgcttttggtgacaaatgtatccctcatcttaattttgtactttagcc
tggccacctagagcactgtcaaaatcaccttgatgagcccagctatcctg
tccccaccttgttactgggctgtgagcttccccatgtccccagatttaaa
tctgttctagttgataaagtgatttccccatatctcagccaatttatttc
attcccaaggggaaaaaaaagatgaagaatcaattcaattccaatgtcag
aacaaataaaggccaaaagtaacaaaaaatttcagatagtaaaacttttg
aataaatatggtagactgaacacacacacagacacactacacacactcgt
ttcattttcaagatgaatcctaagaaacagttgtgtaacactattcctgg
ggaaatatgaacaagttcactaatcccagatagggaacccacaacagatc
aaagtacagatgctaccaaactcagtgagccaatgaatttcattggggtt
acttatagaaatatgagtgagggttacttacaggagcagaaatgactcaa
agacagctgcatcactaaggtgcaccccagcatgggtgacagctcacaca
gagggaccctgaagcacactgcacagtctgcaggcagctcaacaggtctg
agggtgtcctttcccagcagtacagtgttggtctgagccttttccagcca
gctcagctggtctctgggtttttgtttgtttgtttgtttgtctttgtttc
tgtttttgtttcgagcagttctgtcaattgtcttgtctttgtttccccca
ggttgctcagcatgagctcatctaaagcagcacagcttgtctgagagtgg
ttctcagctgtctttacagcctatgcacctgcttggaagaggaggaaccc
agtgaatctgatccgtttcagggacttcctgcatg
gaattcagaagaaatggttgtgtggaagggcatttctcctcctaatcctc
tagcctgaggcaagcactggtaacctctcctgctacacttccggaaacac
tatgctcagtgcatggcagctgtccacagccaagccaccccaaatggagt
cgttctgagtatttaatgaagtagttaggactttatgaataaaccctacg
caggccctgcgtggtggtgcataccttttgccccaggcgaggcaggaggg
tctctgagtttgagactagcctggtccacatggtgagttccaggctggcc
tggaagctgtgatcctacttcctcgggcttgctgggataactactacaca
cctggccctctcctcatcttgatagctggagaaggttgagtcccaccttt
tgcctctgtctgtctcctcaggttattacgtattccagccgtcatgtcta
caataacttgaccgaggagcagaagggccgagtggccttcgcttccaact
tcctggcaggagatgcttccctgcagattgagcctctgaaacccagtgat
gaaggcagatacacctgcaaggtgaagaattcaggacgctatgtctggag
ccatgtcatcttgaaagtgctaggtaaagtaggaccccaaaataaatgtc
tgccttcttttgctgttgtggtttggtttggtttggtttggtttggtttg
gttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40695807_40696706
seq2: B6Ng01-060G08.b_46_946 (reverse)

seq1  ACCACTCTCAGACAAGCTGTGCTGC-TTAGATGAGCTCATGCTGAGCAAC  49
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACCACTCTCAGACAAGCTGTGCTGCTTTAGATGAGCTCATGCTGAGCAAC  50

seq1  CTGGGGGAAACAAAGACAAGACAATTGACAGAACTGCTCGAAACAAAAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGAAACAAAGACAAGACAATTGACAGAACTGCTCGAAACAAAAAC  100

seq1  AGAAACAAAGACAAACAAACAAACAAACAAAAACCCAGAGACCAGCTGAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAGACAAACAAACAAACAAACAAAAACCCAGAGACCAGCTGAG  150

seq1  CTGGCTGGAAAAGGCTCAGACCAACACTGTACTGCTGGGAAAGGACACCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGGAAAAGGCTCAGACCAACACTGTACTGCTGGGAAAGGACACCC  200

seq1  TCAGACCTGTTGAGCTGCCTGCAGACTGTGCAGTGTGCTTCAGGGTCCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTGTTGAGCTGCCTGCAGACTGTGCAGTGTGCTTCAGGGTCCCT  250

seq1  CTGTGTGAGCTGTCACCCATGCTGGGGTGCACCTTAGTGATGCAGCTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGCTGTCACCCATGCTGGGGTGCACCTTAGTGATGCAGCTGTC  300

seq1  TTTGAGTCATTTCTGCTCCTGTAAGTAACCCTCACTCATATTTCTATAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTCATTTCTGCTCCTGTAAGTAACCCTCACTCATATTTCTATAAG  350

seq1  TAACCCCAATGAAATTCATTGGCTCACTGAGTTTGGTAGCATCTGTACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAATGAAATTCATTGGCTCACTGAGTTTGGTAGCATCTGTACTT  400

seq1  TGATCTGTTGTGGGTTCCCTATCTGGGATTAGTGAACTTGTTCATATTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTTGTGGGTTCCCTATCTGGGATTAGTGAACTTGTTCATATTTC  450

seq1  CCCAGGAATAGTGTTACACAACTGTTTCTTAGGATTCATCTTGAAAATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAATAGTGTTACACAACTGTTTCTTAGGATTCATCTTGAAAATGA  500

seq1  AACGAGTGTGTGTAGTGTGTCTGTGTGTGTGTTCAGTCTACCATATTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGTGTGTGTAGTGTGTCTGTGTGTGTGTTCAGTCTACCATATTTAT  550

seq1  TCAAAAGTTTTACTATCTGAAATTTTTTGTTACTTTTGGCCTTTATTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTTTTACTATCTGAAATTTTTTGTTACTTTTGGCCTTTATTTGT  600

seq1  TCTGACATTGGAATTGAATTGATTCTTCATCTTTTTTTTCCCCTTGGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATTGGAATTGAATTGATTCTTCATCTTTTTTTTCCCCTTGGGAA  650

seq1  TGAAATAAATTGGCTGAGATATGGGGAAATCACTTTATCAACTAGAACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAATTGGCTGAGATATGGGGAAATCACTTTATCAACTAGAACAG  700

seq1  ATTTAAATCTGGGGACATGGGGAAGCTCACAGCCCAGTAACAAGGTGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATCTGGGGACATGGGGAAGCTCACAGCCCAGTAACAAGGTGGGG  750

seq1  ACAGGATAGCTGGGCTCATCAAGGTGATTTTGACAGTGCTCTAGGTGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATAGCTGGGCTCATCAAGGTGATTTTGACAGTGCTCTAGGTGGCC  800

seq1  AGGCTAAAGTACAAAATTAAGATGAGGGATACATTTGTCACCAAAAGCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAGTACAAAATTAAGATGAGGGATACATTTGTCACCAAAAGCAA  850

seq1  GTATGTAAAGAGCCCAAAGAACTTTAGCATATACTTACATTCAGTGAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTAAAGAGCCCAAAGAACTTTAGCATATACTTACATTCAGTGAATT  900

seq1  C  900
      |
seq2  C  901

seq1: chr9_40578767_40579470
seq2: B6Ng01-060G08.g_70_773

seq1  GAATTCAGAAGAAATGGTTGTGTGGAAGGGCATTTCTCCTCCTAATCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGAAATGGTTGTGTGGAAGGGCATTTCTCCTCCTAATCCTC  50

seq1  TAGCCTGAGGCAAGCACTGGTAACCTCTCCTGCTACACTTCCGGAAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGAGGCAAGCACTGGTAACCTCTCCTGCTACACTTCCGGAAACAC  100

seq1  TATGCTCAGTGCATGGCAGCTGTCCACAGCCAAGCCACCCCAAATGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCAGTGCATGGCAGCTGTCCACAGCCAAGCCACCCCAAATGGAGT  150

seq1  CGTTCTGAGTATTTAATGAAGTAGTTAGGACTTTATGAATAAACCCTACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTGAGTATTTAATGAAGTAGTTAGGACTTTATGAATAAACCCTACG  200

seq1  CAGGCCCTGCGTGGTGGTGCATACCTTTTGCCCCAGGCGAGGCAGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTGCGTGGTGGTGCATACCTTTTGCCCCAGGCGAGGCAGGAGGG  250

seq1  TCTCTGAGTTTGAGACTAGCCTGGTCCACATGGTGAGTTCCAGGCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTTGAGACTAGCCTGGTCCACATGGTGAGTTCCAGGCTGGCC  300

seq1  TGGAAGCTGTGATCCTACTTCCTCGGGCTTGCTGGGATAACTACTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTGTGATCCTACTTCCTCGGGCTTGCTGGGATAACTACTACACA  350

seq1  CCTGGCCCTCTCCTCATCTTGATAGCTGGAGAAGGTTGAGTCCCACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCTCTCCTCATCTTGATAGCTGGAGAAGGTTGAGTCCCACCTTT  400

seq1  TGCCTCTGTCTGTCTCCTCAGGTTATTACGTATTCCAGCCGTCATGTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGTCTGTCTCCTCAGGTTATTACGTATTCCAGCCGTCATGTCTA  450

seq1  CAATAACTTGACCGAGGAGCAGAAGGGCCGAGTGGCCTTCGCTTCCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTTGACCGAGGAGCAGAAGGGCCGAGTGGCCTTCGCTTCCAACT  500

seq1  TCCTGGCAGGAGATGCTTCCCTGCAGATTGAGCCTCTGAAACCCAGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAGGAGATGCTTCCCTGCAGATTGAGCCTCTGAAACCCAGTGAT  550

seq1  GAAGGCAGATACACCTGCAAGGTGAAGAATTCAGGACGCTATGTCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGATACACCTGCAAGGTGAAGAATTCAGGACGCTATGTCTGGAG  600

seq1  CCATGTCATCTTGAAAGTGCTAGGTAAAGTAGGACCCCAAAATAAATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCATCTTGAAAGTGCTAGGTAAAGTAGGACCCCAAAATAAATGTC  650

seq1  TGCCTTCTTTTGCTGTTGTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTTTGCTGTTGTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTG  700

seq1  GTTT  704
      ||||
seq2  GTTT  704