BAC Information

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BAC

Clone NameB6Ng01-060M07
Chromosome9 (Build37)
Map Location 17,254,369 - 17,255,518
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060M07.bB6Ng01-060M07.g
ACCDH881651DH881652
length1,1381,109
definitionDH881651|Mus musculus domesticus DNA, BAC clone: B6Ng01-060M07, 5' end.DH881652|Mus musculus domesticus DNA, BAC clone: B6Ng01-060M07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaaagtttcttctgtcttattatttagcatctatcctgaccc
gtgctttctcagaagacttatttcttcttctttctttcatttctgaatat
gccaaatacttttaattttcggttcctgactttcctctaagtgtagctta
agtacgtacccatgttcttccctagaacatttttagtctttaataagtaa
tggcagtaattccgtttctaacaatccatggttctggcacactgggcaag
agcacctcatctcatgtcatctgtgtctcatgtcaatttgcatgtgagtt
tctatgaggttcctctaccaatttctgtagacacacatcttttaaaaaca
cttgaatgagccaggcagtggtgtgcacagctttaatcctagcacttggg
agtcagaggccggctgatttctgagttcaaggccagcctggtctacagag
tgaattcaaggacaaccacggctatacagagaaaccctgtcttgaaaaac
cacacacacacacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaa
aacaaaaacaaaaacaaacccacttgaatgaaagaccttcagtagcagaa
atttattttaaacacaactttctttagcaatgttctttaagggtctttgt
ggaacctcccactctgcaactattcattttgtaccccaccctccttgcta
aaagtatctaattgatgcttctttccttgatataattttatgaacttaga
aattctttatattagcagcaccacaaatgtattgcgagtagctttgggaa
gtatttttagaatctttttgtgaacagcgcaaaatataatagatagttcc
ttgtggaggagaaaattacttgtattatgtgtaggaaagctgctggcatt
agctgcacctctgctatttgtgaacaagatagctgctaatagtgagttat
gatttgtctcccaacccagcccttgtctattacacctgtagaaacagtta
agtaggcactaaatcacaaggggcaaatcttcacgttgactctcctcagc
acacgtcgttgttttttgattatagaggacctcacaattatacgtttaac
catgaggaatcagtctgtattactagttcaaaccaata
gaattcctttgtacttgaaagaaagtatcattgagaggaaataaaactca
gagaaaaaaatcagaacaatatacttatcccatgactgtttcaaaaatga
gaatcaaagtgaatatattttaatataaatcttgtttctggaaattctga
agttcaaaatctatgggttgatcaatgatttataaatatttacctataga
aagcttatcatttcaggatttataaataactaggaacatttacaaatcat
cctttgcagctaatatttcatttattagttagtcatatttttaagtctaa
cataaaatttttattttaattttttattattttattttcttactggatat
tttctttatttacatttcaaatgttatctcctttcccagttttccccctg
aaaacctcctacccattctcccttcccctgcttctatgagggtgtttccc
tgcccacccacccaccaactcccacctcccgccttggcattatcgtacac
tggggaattaagccgtcacaggaccaagggcctatcctcccatgatgcca
gacaagaccatcctctgctacatatgtgaatggagccatgggtcccccca
tgtgtactctttggttgggggtttagtccctgggaactctgaggagactg
gttggttgatattgttttttctttctatggggttgaaaaccccttcatcc
cccttctgtcctttctctaactcctccttttggaaccccgtgttcagtgc
aatgggtggctatgagcatctgcctctgtacttatcagtctctcttagag
cctctcagaagtcaggatatcaggctcctatcagcaagcacttctgggac
atccacaatagtctctgattttggtgactgtatatggtatggatcccagg
tggggcagtctctggatggccttccttcgtctctgttcaaactttgaatc
ttatttcttttctgagtatatgtcccccttcaagaggaccaagcatccac
cttagttttcctgtctgagcttaatgaactttaatgtattttggaatttc
gatcttgggctatacctctacaggaagataactcagtgaattcttgtgaa
ctgggttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17254369_17255518
seq2: B6Ng01-060M07.b_44_1181

seq1  GAATTCTTCAAAGTTTCTTCTGTCTTATTATTTAGCATCTATCCTGACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAAGTTTCTTCTGTCTTATTATTTAGCATCTATCCTGACCC  50

seq1  GTGCTTTCTCAGAAGACTTATTTCTTCTTCTTTCTTTCATTTCTGAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCTCAGAAGACTTATTTCTTCTTCTTTCTTTCATTTCTGAATAT  100

seq1  GCCAAATACTTTTAATTTTCGGTTCCTGACTTTCCTCTAAGTGTAGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATACTTTTAATTTTCGGTTCCTGACTTTCCTCTAAGTGTAGCTTA  150

seq1  AGTACGTACCCATGTTCTTCCCTAGAACATTTTTAGTCTTTAATAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGTACCCATGTTCTTCCCTAGAACATTTTTAGTCTTTAATAAGTAA  200

seq1  TGGCAGTAATTCCGTTTCTAACAATCCATGGTTCTGGCACACTGGGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTAATTCCGTTTCTAACAATCCATGGTTCTGGCACACTGGGCAAG  250

seq1  AGCACCTCATCTCATGTCATCTGTGTCTCATGTCAATTTGCATGTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTCATCTCATGTCATCTGTGTCTCATGTCAATTTGCATGTGAGTT  300

seq1  TCTATGAGGTTCCTCTACCAATTTCTGTAGACACACATCTTTTAAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGGTTCCTCTACCAATTTCTGTAGACACACATCTTTTAAAAACA  350

seq1  CTTGAATGAGCCAGGCAGTGGTGTGCACAGCTTTAATCCTAGCACTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATGAGCCAGGCAGTGGTGTGCACAGCTTTAATCCTAGCACTTGGG  400

seq1  AGTCAGAGGCCGGCTGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGGCCGGCTGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAG  450

seq1  TGAATTCAAGGACAACCACGGCTATACAGAGAAACCCTGTCTTGAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAAGGACAACCACGGCTATACAGAGAAACCCTGTCTTGAAAAAC  500

seq1  CACACACACACACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA  550

seq1  AACAAAAACAAAAACAAACCCACTTGAATGAAAGACCTTCAGTAGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAACAAACCCACTTGAATGAAAGACCTTCAGTAGCAGAA  600

seq1  ATTTATTTTAAACACAACTTTCTTTAGCAATGTTCTTTAAGGGTCTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTAAACACAACTTTCTTTAGCAATGTTCTTTAAGGGTCTTTGT  650

seq1  GGAACCTCCCACTCTGCAACTATTCATTTTGTACCCCACCCTCCTTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCCCACTCTGCAACTATTCATTTTGTACCCCACCCTCCTTGCTA  700

seq1  AAAGTATCTAATTGATGCTTCTTTCCTTGATATAATTTTATGAACTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCTAATTGATGCTTCTTTCCTTGATATAATTTTATGAACTTAGA  750

seq1  AATTCTTTATATTAGCAGCACCACAAATGTATTGCGAGTAGCTTTGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATATTAGCAGCACCACAAATGTATTGCGAGTAGCTTTGGGAA  800

seq1  GTATTTTTAGAATCTTTTTGTGAACAGCGCAAAATATAATAGATAGTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTAGAATCTTTTTGTGAACAGCGCAAAATATAATAGATAGTTCC  850

seq1  TTGTGGAGGAGAAAATTACTTGTATTATGTGTAAGGAAAGCTGCTGGCAT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGTGGAGGAGAAAATTACTTGTATTATGTGT-AGGAAAGCTGCTGGCAT  899

seq1  TAGCTGCACCTCTGCTATTTGTGAACAAGATATGCTGCTAATAAGTGAGT  950
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  TAGCTGCACCTCTGCTATTTGTGAACAAGATA-GCTGCTAAT-AGTGAGT  947

seq1  TATGATTTGTCTCCCAACCCAGCCCTTGTCTAATTACA-CTGTAGAAACA  999
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TATGATTTGTCTCCCAACCCAGCCCTTGTCT-ATTACACCTGTAGAAACA  996

seq1  GTTAAGTAGGCACTAAATTCACAAGGGGCAAAATCTCACTGTGACTCCCC  1049
      ||||||||||||||||| ||||||||||||||   ||||  |||||| ||
seq2  GTTAAGTAGGCACTAAA-TCACAAGGGGCAAATCTTCACGTTGACTCTCC  1045

seq1  TCAGCACACGTCGTTGTTTTTCTGATATTAGAGGACCTCACAATTATACG  1099
      ||||||||||||||||||||| ||||  ||||||||||||||||||||||
seq2  TCAGCACACGTCGTTGTTTTT-TGATTATAGAGGACCTCACAATTATACG  1094

seq1  TTTTAAACCATTGAGGGATCCAGTCTGTAATTACGTAGTTCAAACACAAT  1149
      |||  ||||| ||||| || |||||||| ||||| |||||||||| ||||
seq2  TTT--AACCA-TGAGGAAT-CAGTCTGT-ATTAC-TAGTTCAAAC-CAAT  1137

seq1  A  1150
      |
seq2  A  1138